RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-208ENST00000477541 FANCD2Q9BXW9 1451 aa19.63■□□□□ 0.73
HLA-DMA-208ENST00000477541 CUX1P39880 1505 aa19.63■□□□□ 0.73
HLA-DMA-208ENST00000477541 ARHGEF11O15085 1522 aa19.63■□□□□ 0.73
HLA-DMA-208ENST00000477541 CCNB3Q8WWL7 1395 aa19.62■□□□□ 0.73
HLA-DMA-208ENST00000477541 ARHGAP35Q9NRY4 1499 aa19.58■□□□□ 0.72
HLA-DMA-208ENST00000477541 CFTRP13569 1480 aa19.57■□□□□ 0.72
HLA-DMA-208ENST00000477541 TIAM1Q13009 1591 aa19.53■□□□□ 0.72
HLA-DMA-208ENST00000477541 KANK4Q5T7N3 995 aaPredicted RBP19.53■□□□□ 0.72
HLA-DMA-208ENST00000477541 URB2Q14146 1524 aaKnown RBP19.52■□□□□ 0.72
HLA-DMA-208ENST00000477541 SUPT16HQ9Y5B9 1047 aaKnown RBP19.49■□□□□ 0.71
HLA-DMA-208ENST00000477541 TRHP20396 242 aaPredicted RBP19.48■□□□□ 0.71
HLA-DMA-208ENST00000477541 CYB5RLQ6IPT4 315 aa19.48■□□□□ 0.71
HLA-DMA-208ENST00000477541 AEBP2Q6ZN18 517 aaPredicted RBP19.48■□□□□ 0.71
HLA-DMA-208ENST00000477541 TIMELESSQ9UNS1 1208 aa19.47■□□□□ 0.71
HLA-DMA-208ENST00000477541 CFAP43Q8NDM7 1665 aa19.46■□□□□ 0.71
HLA-DMA-208ENST00000477541 MAPKBP1O60336 1514 aa19.46■□□□□ 0.71
HLA-DMA-208ENST00000477541 FHAD1B1AJZ9 1412 aa19.42■□□□□ 0.7
HLA-DMA-208ENST00000477541 SETD5Q9C0A6 1442 aa19.42■□□□□ 0.7
HLA-DMA-208ENST00000477541 RAB3GAP2Q9H2M9 1393 aa19.41■□□□□ 0.7
HLA-DMA-208ENST00000477541 RANGAP1P46060 587 aaPredicted RBP19.41■□□□□ 0.7
HLA-DMA-208ENST00000477541 LRRC9Q6ZRR7 1453 aa19.4■□□□□ 0.7
HLA-DMA-208ENST00000477541 IFT140Q96RY7 1462 aa19.39■□□□□ 0.69
HLA-DMA-208ENST00000477541 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.38■□□□□ 0.69
HLA-DMA-208ENST00000477541 ZNF608Q9ULD9 1512 aaPredicted RBP19.38■□□□□ 0.69
HLA-DMA-208ENST00000477541 IGF1RP08069 1367 aa19.35■□□□□ 0.69
HLA-DMA-208ENST00000477541 EFCAB5A4FU69 1503 aa19.32■□□□□ 0.68
HLA-DMA-208ENST00000477541 AQRO60306 1485 aaKnown RBP eCLIP19.31■□□□□ 0.68
HLA-DMA-208ENST00000477541 CARMIL1Q5VZK9 1371 aa19.29■□□□□ 0.68
HLA-DMA-208ENST00000477541 FYCO1Q9BQS8 1478 aa19.28■□□□□ 0.68
HLA-DMA-208ENST00000477541 PCF11O94913 1555 aaKnown RBP19.25■□□□□ 0.67
HLA-DMA-208ENST00000477541 WDR97A6NE52 1622 aa19.25■□□□□ 0.67
HLA-DMA-208ENST00000477541 EIF4G3O43432 1585 aaKnown RBP19.25■□□□□ 0.67
HLA-DMA-208ENST00000477541 CCER2I3L3R5 266 aa19.25■□□□□ 0.67
HLA-DMA-208ENST00000477541 TSHZ2Q9NRE2 1034 aa19.25■□□□□ 0.67
HLA-DMA-208ENST00000477541 PHLDB1Q86UU1 1377 aa19.23■□□□□ 0.67
HLA-DMA-208ENST00000477541 FGD5Q6ZNL6 1462 aa19.23■□□□□ 0.67
HLA-DMA-208ENST00000477541 CHD1O14646 1710 aa19.22■□□□□ 0.67
HLA-DMA-208ENST00000477541 CUL7Q14999 1698 aa19.21■□□□□ 0.67
HLA-DMA-208ENST00000477541 CASKIN1Q8WXD9 1431 aa19.2■□□□□ 0.66
HLA-DMA-208ENST00000477541 TOPBP1Q92547 1522 aa19.19■□□□□ 0.66
HLA-DMA-208ENST00000477541 CTTNBP2Q8WZ74 1663 aa19.17■□□□□ 0.66
HLA-DMA-208ENST00000477541 PPP1R15AO75807 674 aaPredicted RBP19.17■□□□□ 0.66
HLA-DMA-208ENST00000477541 ANP32EQ9BTT0 268 aa19.15■□□□□ 0.66
HLA-DMA-208ENST00000477541 ITGAEP38570 1179 aa19.14■□□□□ 0.66
HLA-DMA-208ENST00000477541 ABCA10Q8WWZ4 1543 aa19.13■□□□□ 0.65
HLA-DMA-208ENST00000477541 DNMBPQ6XZF7 1577 aa19.12■□□□□ 0.65
HLA-DMA-208ENST00000477541 FMN1Q68DA7 1419 aa19.11■□□□□ 0.65
HLA-DMA-208ENST00000477541 NEFLP07196 543 aa19.11■□□□□ 0.65
HLA-DMA-208ENST00000477541 TARBP1Q13395 1621 aaKnown RBP19.09■□□□□ 0.65
HLA-DMA-208ENST00000477541 ANP32CO43423 234 aa19.08■□□□□ 0.64
HLA-DMA-208ENST00000477541 HFM1A2PYH4 1435 aa19.07■□□□□ 0.64
HLA-DMA-208ENST00000477541 FGD6Q6ZV73 1430 aa19.07■□□□□ 0.64
HLA-DMA-208ENST00000477541 UACAQ9BZF9 1416 aa19.07■□□□□ 0.64
HLA-DMA-208ENST00000477541 FAM50AQ14320 339 aaKnown RBP19.07■□□□□ 0.64
HLA-DMA-208ENST00000477541 FBLN2P98095 1184 aa19.06■□□□□ 0.64
HLA-DMA-208ENST00000477541 DDX10Q13206 875 aaKnown RBP19.06■□□□□ 0.64
HLA-DMA-208ENST00000477541 CLASP1Q7Z460 1538 aa19.05■□□□□ 0.64
HLA-DMA-208ENST00000477541 CCDC18Q5T9S5 1454 aa19.04■□□□□ 0.64
HLA-DMA-208ENST00000477541 PTPN23Q9H3S7 1636 aa19.03■□□□□ 0.64
HLA-DMA-208ENST00000477541 SNAPC4Q5SXM2 1469 aa19.02■□□□□ 0.64
HLA-DMA-208ENST00000477541 TONSLQ96HA7 1378 aa19.02■□□□□ 0.64
HLA-DMA-208ENST00000477541 KCNH8Q96L42 1107 aa19.02■□□□□ 0.63
HLA-DMA-208ENST00000477541 SIN3AQ96ST3 1273 aa19.02■□□□□ 0.63
HLA-DMA-208ENST00000477541 SAMD9Q5K651 1589 aa19.02■□□□□ 0.63
HLA-DMA-208ENST00000477541 FKBP8Q14318 412 aa19.01■□□□□ 0.63
HLA-DMA-208ENST00000477541 FHOD3Q2V2M9 1422 aa19.01■□□□□ 0.63
HLA-DMA-208ENST00000477541 SUPT6HQ7KZ85 1726 aaKnown RBP18.98■□□□□ 0.63
HLA-DMA-208ENST00000477541 EHBP1L1Q8N3D4 1523 aa18.97■□□□□ 0.63
HLA-DMA-208ENST00000477541 POLA1P09884 1462 aaPredicted RBP18.95■□□□□ 0.62
HLA-DMA-208ENST00000477541 AKNAQ7Z591 1439 aa18.95■□□□□ 0.62
HLA-DMA-208ENST00000477541 GCC2Q8IWJ2 1684 aa18.94■□□□□ 0.62
HLA-DMA-208ENST00000477541 ERICH6BQ5W0A0 696 aa18.94■□□□□ 0.62
HLA-DMA-208ENST00000477541 MYOM3Q5VTT5 1437 aa18.93■□□□□ 0.62
HLA-DMA-208ENST00000477541 HECW1Q76N89 1606 aa18.93■□□□□ 0.62
HLA-DMA-208ENST00000477541 NAIPQ13075 1403 aa18.91■□□□□ 0.62
HLA-DMA-208ENST00000477541 GRIN2BQ13224 1484 aa18.91■□□□□ 0.62
HLA-DMA-208ENST00000477541 MTUS2Q5JR59 1369 aa18.91■□□□□ 0.62
HLA-DMA-208ENST00000477541 KDM5BQ9UGL1 1544 aa18.9■□□□□ 0.62
HLA-DMA-208ENST00000477541 NCOA2Q15596 1464 aa18.89■□□□□ 0.61
HLA-DMA-208ENST00000477541 LRRIQ1Q96JM4 1722 aa18.89■□□□□ 0.61
HLA-DMA-208ENST00000477541 ABCA5Q8WWZ7 1642 aa18.88■□□□□ 0.61
HLA-DMA-208ENST00000477541 TCOF1Q13428 1488 aaKnown RBP18.88■□□□□ 0.61
HLA-DMA-208ENST00000477541 GAPVD1Q14C86 1478 aa18.87■□□□□ 0.61
HLA-DMA-208ENST00000477541 MAGI1Q96QZ7 1491 aaPredicted RBP18.87■□□□□ 0.61
HLA-DMA-208ENST00000477541 UGGT2Q9NYU1 1516 aa18.87■□□□□ 0.61
HLA-DMA-208ENST00000477541 CHMP7Q8WUX9 453 aaPredicted RBP18.86■□□□□ 0.61
HLA-DMA-208ENST00000477541 TDRD9Q8NDG6 1382 aaKnown RBP18.86■□□□□ 0.61
HLA-DMA-208ENST00000477541 RBM19Q9Y4C8 960 aaKnown RBP18.86■□□□□ 0.61
HLA-DMA-208ENST00000477541 RAD54L2Q9Y4B4 1467 aa18.85■□□□□ 0.61
HLA-DMA-208ENST00000477541 BCANQ96GW7 911 aa18.85■□□□□ 0.61
HLA-DMA-208ENST00000477541 PTPRKQ15262 1439 aa18.83■□□□□ 0.61
HLA-DMA-208ENST00000477541 P3H3Q8IVL6 736 aa18.81■□□□□ 0.6
HLA-DMA-208ENST00000477541 ATP1B4Q9UN42 357 aaPredicted RBP18.81■□□□□ 0.6
HLA-DMA-208ENST00000477541 SYNJ2O15056 1496 aa18.81■□□□□ 0.6
HLA-DMA-208ENST00000477541 FANCIQ9NVI1 1328 aa18.79■□□□□ 0.6
HLA-DMA-208ENST00000477541 TRIM52Q96A61 297 aa18.79■□□□□ 0.6
HLA-DMA-208ENST00000477541 POLR1AO95602 1720 aaPredicted RBP18.78■□□□□ 0.6
HLA-DMA-208ENST00000477541 MIA2Q96PC5 1412 aa18.77■□□□□ 0.6
HLA-DMA-208ENST00000477541 ILDR1Q86SU0 546 aaPredicted RBP18.76■□□□□ 0.59
HLA-DMA-208ENST00000477541 CNTLNQ9NXG0 1405 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms