RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 TSPY10P0CW01 314 aa20.15■□□□□ 0.82
HDAC6-220ENST00000477528 HIRIP3Q9BW71 556 aaPredicted RBP20.14■□□□□ 0.81
HDAC6-220ENST00000477528 ARHGAP35Q9NRY4 1499 aa20.13■□□□□ 0.81
HDAC6-220ENST00000477528 SIN3AQ96ST3 1273 aa20.13■□□□□ 0.81
HDAC6-220ENST00000477528 TIMELESSQ9UNS1 1208 aa20.11■□□□□ 0.81
HDAC6-220ENST00000477528 HNRNPUQ00839 825 aaKnown RBP eCLIP20.1■□□□□ 0.81
HDAC6-220ENST00000477528 FKBP8Q14318 412 aa20.1■□□□□ 0.81
HDAC6-220ENST00000477528 SLC4A1APQ9BWU0 796 aaKnown RBP20.1■□□□□ 0.81
HDAC6-220ENST00000477528 FMN1Q68DA7 1419 aa20.1■□□□□ 0.81
HDAC6-220ENST00000477528 EIF4G1Q04637 1599 aaKnown RBP20.1■□□□□ 0.81
HDAC6-220ENST00000477528 EIF4G2P78344 907 aaKnown RBP eCLIP20.1■□□□□ 0.812e-9■■■■■ 73
HDAC6-220ENST00000477528 KIF21BO75037 1637 aa20.1■□□□□ 0.81
HDAC6-220ENST00000477528 SYNJ1O43426 1573 aa20.1■□□□□ 0.81
HDAC6-220ENST00000477528 TDRD9Q8NDG6 1382 aaKnown RBP20.09■□□□□ 0.81
HDAC6-220ENST00000477528 PLEKHD1A6NEE1 506 aa20.07■□□□□ 0.8
HDAC6-220ENST00000477528 FANCD2Q9BXW9 1451 aa20.06■□□□□ 0.8
HDAC6-220ENST00000477528 RAB3GAP2Q9H2M9 1393 aa20.06■□□□□ 0.8
HDAC6-220ENST00000477528 CFDP1Q9UEE9 299 aaPredicted RBP20.04■□□□□ 0.8
HDAC6-220ENST00000477528 DAXXQ9UER7 740 aaPredicted RBP20.02■□□□□ 0.8
HDAC6-220ENST00000477528 ERCC6Q03468 1493 aa20.02■□□□□ 0.79
HDAC6-220ENST00000477528 BICRAQ9NZM4 1560 aa20.02■□□□□ 0.79
HDAC6-220ENST00000477528 IGF1RP08069 1367 aa20.01■□□□□ 0.79
HDAC6-220ENST00000477528 FHOD3Q2V2M9 1422 aa20.01■□□□□ 0.79
HDAC6-220ENST00000477528 FAM9BQ8IZU0 186 aa20■□□□□ 0.79
HDAC6-220ENST00000477528 FGD5Q6ZNL6 1462 aa19.99■□□□□ 0.79
HDAC6-220ENST00000477528 CFTRP13569 1480 aa19.98■□□□□ 0.79
HDAC6-220ENST00000477528 ERICH3Q5RHP9 1530 aa19.97■□□□□ 0.79
HDAC6-220ENST00000477528 HMGXB3Q12766 1538 aa19.96■□□□□ 0.79
HDAC6-220ENST00000477528 DHX57Q6P158 1386 aaKnown RBP19.96■□□□□ 0.79
HDAC6-220ENST00000477528 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.95■□□□□ 0.785e-7■■■■□ 20.8
HDAC6-220ENST00000477528 TOP2BQ02880 1626 aa19.95■□□□□ 0.78
HDAC6-220ENST00000477528 MRS2Q9HD23 443 aa19.95■□□□□ 0.78
HDAC6-220ENST00000477528 KDM2AQ9Y2K7 1162 aa19.92■□□□□ 0.78
HDAC6-220ENST00000477528 PEG3Q9GZU2 1588 aa19.88■□□□□ 0.77
HDAC6-220ENST00000477528 PRXQ9BXM0 1461 aa19.88■□□□□ 0.77
HDAC6-220ENST00000477528 TMC1Q8TDI8 760 aa19.88■□□□□ 0.77
HDAC6-220ENST00000477528 NPM1P06748 294 aaKnown RBP eCLIP19.84■□□□□ 0.77
HDAC6-220ENST00000477528 CUX1P39880 1505 aa19.82■□□□□ 0.76
HDAC6-220ENST00000477528 RAD54L2Q9Y4B4 1467 aa19.82■□□□□ 0.76
HDAC6-220ENST00000477528 UNC13AQ9UPW8 1703 aa19.82■□□□□ 0.76
HDAC6-220ENST00000477528 ARAP1Q96P48 1450 aa19.81■□□□□ 0.76
HDAC6-220ENST00000477528 KCNH8Q96L42 1107 aa19.81■□□□□ 0.76
HDAC6-220ENST00000477528 PPP1R15AO75807 674 aaPredicted RBP19.8■□□□□ 0.76
HDAC6-220ENST00000477528 CARMIL2Q6F5E8 1435 aa19.78■□□□□ 0.76
HDAC6-220ENST00000477528 RTL5Q5HYW3 569 aaPredicted RBP19.78■□□□□ 0.76
HDAC6-220ENST00000477528 CCER2I3L3R5 266 aa19.77■□□□□ 0.76
HDAC6-220ENST00000477528 GAPVD1Q14C86 1478 aa19.76■□□□□ 0.75
HDAC6-220ENST00000477528 CHGAP10645 457 aaKnown RBP19.74■□□□□ 0.75
HDAC6-220ENST00000477528 CARD11Q9BXL7 1154 aa19.73■□□□□ 0.75
HDAC6-220ENST00000477528 MPHOSPH9Q99550 1183 aa19.73■□□□□ 0.75
HDAC6-220ENST00000477528 LRRC9Q6ZRR7 1453 aa19.73■□□□□ 0.75
HDAC6-220ENST00000477528 CCDC18Q5T9S5 1454 aa19.71■□□□□ 0.75
HDAC6-220ENST00000477528 RRBP1Q9P2E9 1410 aaKnown RBP19.71■□□□□ 0.75
HDAC6-220ENST00000477528 RGL3Q3MIN7 710 aa19.7■□□□□ 0.74
HDAC6-220ENST00000477528 HSPA5P11021 654 aaKnown RBP19.7■□□□□ 0.74
HDAC6-220ENST00000477528 SUPT16HQ9Y5B9 1047 aaKnown RBP19.69■□□□□ 0.74
HDAC6-220ENST00000477528 PHLDB1Q86UU1 1377 aa19.68■□□□□ 0.74
HDAC6-220ENST00000477528 CANXP27824 592 aaKnown RBP19.68■□□□□ 0.74
HDAC6-220ENST00000477528 IRX6P78412 446 aaPredicted RBP19.67■□□□□ 0.74
HDAC6-220ENST00000477528 SALL2Q9Y467 1007 aaPredicted RBP19.67■□□□□ 0.74
HDAC6-220ENST00000477528 CASKIN1Q8WXD9 1431 aa19.66■□□□□ 0.74
HDAC6-220ENST00000477528 ANP32AP39687 249 aaKnown RBP19.65■□□□□ 0.74
HDAC6-220ENST00000477528 FOXD1Q16676 465 aa19.65■□□□□ 0.74
HDAC6-220ENST00000477528 CC2D2AQ9P2K1 1620 aa19.65■□□□□ 0.74
HDAC6-220ENST00000477528 CCDC136Q96JN2 1154 aa19.64■□□□□ 0.74
HDAC6-220ENST00000477528 FGD6Q6ZV73 1430 aa19.63■□□□□ 0.73
HDAC6-220ENST00000477528 PKD2Q13563 968 aa19.62■□□□□ 0.73
HDAC6-220ENST00000477528 ANKRD30AQ9BXX3 1397 aa19.61■□□□□ 0.73
HDAC6-220ENST00000477528 WDR43Q15061 677 aaKnown RBP eCLIP19.61■□□□□ 0.73
HDAC6-220ENST00000477528 FYCO1Q9BQS8 1478 aa19.61■□□□□ 0.73
HDAC6-220ENST00000477528 TOPBP1Q92547 1522 aa19.6■□□□□ 0.73
HDAC6-220ENST00000477528 NESP48681 1621 aa19.58■□□□□ 0.73
HDAC6-220ENST00000477528 EFCAB5A4FU69 1503 aa19.58■□□□□ 0.73
HDAC6-220ENST00000477528 NEFMP07197 916 aa19.58■□□□□ 0.73
HDAC6-220ENST00000477528 MYOM3Q5VTT5 1437 aa19.58■□□□□ 0.72
HDAC6-220ENST00000477528 POLA1P09884 1462 aaPredicted RBP19.58■□□□□ 0.72
HDAC6-220ENST00000477528 DCAF11Q8TEB1 546 aa19.57■□□□□ 0.72
HDAC6-220ENST00000477528 L3MBTL2Q969R5 705 aa19.57■□□□□ 0.72
HDAC6-220ENST00000477528 JPH4Q96JJ6 628 aa19.57■□□□□ 0.72
HDAC6-220ENST00000477528 BIVM-ERCC5R4GMW8 1640 aa19.55■□□□□ 0.72
HDAC6-220ENST00000477528 DNMBPQ6XZF7 1577 aa19.55■□□□□ 0.72
HDAC6-220ENST00000477528 CDCA8Q53HL2 280 aa19.55■□□□□ 0.72
HDAC6-220ENST00000477528 NUP155O75694 1391 aa19.54■□□□□ 0.72
HDAC6-220ENST00000477528 STAG3Q9UJ98 1225 aa19.54■□□□□ 0.72
HDAC6-220ENST00000477528 TIAM1Q13009 1591 aa19.53■□□□□ 0.72
HDAC6-220ENST00000477528 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.51■□□□□ 0.71
HDAC6-220ENST00000477528 AQRO60306 1485 aaKnown RBP eCLIP19.5■□□□□ 0.713e-9■■■■■ 27.5
HDAC6-220ENST00000477528 NCOA2Q15596 1464 aa19.5■□□□□ 0.71
HDAC6-220ENST00000477528 UACAQ9BZF9 1416 aa19.49■□□□□ 0.71
HDAC6-220ENST00000477528 ESF1Q9H501 851 aaKnown RBP19.49■□□□□ 0.71
HDAC6-220ENST00000477528 NPM2Q86SE8 214 aaKnown RBP19.48■□□□□ 0.71
HDAC6-220ENST00000477528 KNSTRNQ9Y448 316 aa19.48■□□□□ 0.71
HDAC6-220ENST00000477528 ABCA10Q8WWZ4 1543 aa19.47■□□□□ 0.71
HDAC6-220ENST00000477528 PPP4R2Q9NY27 417 aa19.46■□□□□ 0.71
HDAC6-220ENST00000477528 RSPH4AQ5TD94 716 aa19.46■□□□□ 0.71
HDAC6-220ENST00000477528 GRIN2BQ13224 1484 aa19.46■□□□□ 0.71
HDAC6-220ENST00000477528 HNRNPMP52272 730 aaKnown RBP eCLIP19.42■□□□□ 0.7
HDAC6-220ENST00000477528 TMF1P82094 1093 aa19.42■□□□□ 0.7
HDAC6-220ENST00000477528 EFCAB2Q5VUJ9 269 aa19.41■□□□□ 0.7
HDAC6-220ENST00000477528 KANK1Q14678 1352 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms