RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 TIAM1Q13009 1591 aa12.29□□□□□ -0.44
VAPB-205ENST00000476395 CLSPNQ9HAW4 1339 aa12.29□□□□□ -0.44
VAPB-205ENST00000476395 IGF1RP08069 1367 aa12.28□□□□□ -0.44
VAPB-205ENST00000476395 CFAP43Q8NDM7 1665 aa12.27□□□□□ -0.45
VAPB-205ENST00000476395 BCANQ96GW7 911 aa12.26□□□□□ -0.45
VAPB-205ENST00000476395 MAP3K1Q13233 1512 aa12.26□□□□□ -0.45
VAPB-205ENST00000476395 CCNB3Q8WWL7 1395 aa12.24□□□□□ -0.45
VAPB-205ENST00000476395 FGD5Q6ZNL6 1462 aa12.22□□□□□ -0.45
VAPB-205ENST00000476395 PCF11O94913 1555 aaKnown RBP12.22□□□□□ -0.45
VAPB-205ENST00000476395 LRRIQ1Q96JM4 1722 aa12.21□□□□□ -0.46
VAPB-205ENST00000476395 LRRC9Q6ZRR7 1453 aa12.2□□□□□ -0.46
VAPB-205ENST00000476395 PHLDB1Q86UU1 1377 aa12.2□□□□□ -0.46
VAPB-205ENST00000476395 RAB3GAP2Q9H2M9 1393 aa12.18□□□□□ -0.46
VAPB-205ENST00000476395 CADPSQ9ULU8 1353 aa12.16□□□□□ -0.46
VAPB-205ENST00000476395 WDR97A6NE52 1622 aa12.16□□□□□ -0.46
VAPB-205ENST00000476395 KCNH8Q96L42 1107 aa12.15□□□□□ -0.46
VAPB-205ENST00000476395 CARMIL1Q5VZK9 1371 aa12.13□□□□□ -0.47
VAPB-205ENST00000476395 PHF23Q9BUL5 403 aaPredicted RBP12.13□□□□□ -0.47
VAPB-205ENST00000476395 CTTNBP2Q8WZ74 1663 aa12.12□□□□□ -0.47
VAPB-205ENST00000476395 RAD54L2Q9Y4B4 1467 aa12.1□□□□□ -0.47
VAPB-205ENST00000476395 ABCA10Q8WWZ4 1543 aa12.1□□□□□ -0.47
VAPB-205ENST00000476395 DNMBPQ6XZF7 1577 aa12.1□□□□□ -0.47
VAPB-205ENST00000476395 SNAPC4Q5SXM2 1469 aa12.09□□□□□ -0.47
VAPB-205ENST00000476395 SETD5Q9C0A6 1442 aa12.09□□□□□ -0.47
VAPB-205ENST00000476395 POLA1P09884 1462 aaPredicted RBP12.08□□□□□ -0.48
VAPB-205ENST00000476395 FANCD2Q9BXW9 1451 aa12.08□□□□□ -0.48
VAPB-205ENST00000476395 KDM5BQ9UGL1 1544 aa12.07□□□□□ -0.48
VAPB-205ENST00000476395 ITGAEP38570 1179 aa12.07□□□□□ -0.48
VAPB-205ENST00000476395 TOPBP1Q92547 1522 aa12.06□□□□□ -0.48
VAPB-205ENST00000476395 FHOD3Q2V2M9 1422 aa12.06□□□□□ -0.48
VAPB-205ENST00000476395 FYCO1Q9BQS8 1478 aa12.06□□□□□ -0.48
VAPB-205ENST00000476395 MSH5O43196 834 aa12.06□□□□□ -0.48
VAPB-205ENST00000476395 SAMD9Q5K651 1589 aa12.06□□□□□ -0.48
VAPB-205ENST00000476395 CUL7Q14999 1698 aa12.06□□□□□ -0.48
VAPB-205ENST00000476395 RBM19Q9Y4C8 960 aaKnown RBP12.05□□□□□ -0.48
VAPB-205ENST00000476395 AQRO60306 1485 aaKnown RBP eCLIP12.05□□□□□ -0.481e-6■■■■□ 26.3
VAPB-205ENST00000476395 NESP48681 1621 aa12.05□□□□□ -0.48
VAPB-205ENST00000476395 PTPRKQ15262 1439 aa12.05□□□□□ -0.48
VAPB-205ENST00000476395 EFCAB5A4FU69 1503 aa12.04□□□□□ -0.48
VAPB-205ENST00000476395 ABCA5Q8WWZ7 1642 aa12.04□□□□□ -0.48
VAPB-205ENST00000476395 CASKIN1Q8WXD9 1431 aa12.03□□□□□ -0.48
VAPB-205ENST00000476395 FKBP8Q14318 412 aa12.03□□□□□ -0.48
VAPB-205ENST00000476395 SIN3AQ96ST3 1273 aa12.03□□□□□ -0.48
VAPB-205ENST00000476395 FHAD1B1AJZ9 1412 aa12.02□□□□□ -0.49
VAPB-205ENST00000476395 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.01□□□□□ -0.49
VAPB-205ENST00000476395 PPP1R15AO75807 674 aaPredicted RBP12□□□□□ -0.49
VAPB-205ENST00000476395 URB2Q14146 1524 aaKnown RBP12□□□□□ -0.49
VAPB-205ENST00000476395 DENND4BO75064 1496 aaPredicted RBP12□□□□□ -0.49
VAPB-205ENST00000476395 MAGI3Q5TCQ9 1506 aa11.99□□□□□ -0.49
VAPB-205ENST00000476395 LAMC3Q9Y6N6 1575 aa11.99□□□□□ -0.49
VAPB-205ENST00000476395 PTPN23Q9H3S7 1636 aa11.99□□□□□ -0.49
VAPB-205ENST00000476395 ARHGEF11O15085 1522 aa11.98□□□□□ -0.49
VAPB-205ENST00000476395 GRIN2BQ13224 1484 aa11.97□□□□□ -0.49
VAPB-205ENST00000476395 P3H3Q8IVL6 736 aa11.97□□□□□ -0.49
VAPB-205ENST00000476395 PLEKHG5O94827 1062 aa11.97□□□□□ -0.49
VAPB-205ENST00000476395 FGD6Q6ZV73 1430 aa11.96□□□□□ -0.49
VAPB-205ENST00000476395 KDM6BO15054 1643 aa11.94□□□□□ -0.5
VAPB-205ENST00000476395 HFM1A2PYH4 1435 aa11.93□□□□□ -0.5
VAPB-205ENST00000476395 NCBP3Q53F19 620 aaKnown RBP11.92□□□□□ -0.5
VAPB-205ENST00000476395 ANO8Q9HCE9 1232 aaPredicted RBP11.92□□□□□ -0.5
VAPB-205ENST00000476395 PDS5BQ9NTI5 1447 aa11.92□□□□□ -0.5
VAPB-205ENST00000476395 TARBP1Q13395 1621 aaKnown RBP11.92□□□□□ -0.5
VAPB-205ENST00000476395 CCDC18Q5T9S5 1454 aa11.92□□□□□ -0.5
VAPB-205ENST00000476395 KIF21AQ7Z4S6 1674 aa11.91□□□□□ -0.5
VAPB-205ENST00000476395 NAIPQ13075 1403 aa11.91□□□□□ -0.5
VAPB-205ENST00000476395 THOC2Q8NI27 1593 aaKnown RBP11.91□□□□□ -0.5
VAPB-205ENST00000476395 UGGT2Q9NYU1 1516 aa11.91□□□□□ -0.5
VAPB-205ENST00000476395 GCC2Q8IWJ2 1684 aa11.9□□□□□ -0.5
VAPB-205ENST00000476395 FAM50AQ14320 339 aaKnown RBP11.9□□□□□ -0.5
VAPB-205ENST00000476395 NCOA2Q15596 1464 aa11.89□□□□□ -0.51
VAPB-205ENST00000476395 HIRIP3Q9BW71 556 aaPredicted RBP11.89□□□□□ -0.51
VAPB-205ENST00000476395 DDX10Q13206 875 aaKnown RBP11.89□□□□□ -0.51
VAPB-205ENST00000476395 SUPT6HQ7KZ85 1726 aaKnown RBP11.89□□□□□ -0.51
VAPB-205ENST00000476395 UACAQ9BZF9 1416 aa11.88□□□□□ -0.51
VAPB-205ENST00000476395 FMN1Q68DA7 1419 aa11.88□□□□□ -0.51
VAPB-205ENST00000476395 TIMELESSQ9UNS1 1208 aa11.87□□□□□ -0.51
VAPB-205ENST00000476395 HECW1Q76N89 1606 aa11.86□□□□□ -0.51
VAPB-205ENST00000476395 TRIM52Q96A61 297 aa11.86□□□□□ -0.51
VAPB-205ENST00000476395 PBRM1Q86U86 1689 aa11.86□□□□□ -0.51
VAPB-205ENST00000476395 MYOM3Q5VTT5 1437 aa11.86□□□□□ -0.51
VAPB-205ENST00000476395 TCOF1Q13428 1488 aaKnown RBP11.86□□□□□ -0.51
VAPB-205ENST00000476395 EHBP1L1Q8N3D4 1523 aa11.85□□□□□ -0.51
VAPB-205ENST00000476395 TDRD9Q8NDG6 1382 aaKnown RBP11.84□□□□□ -0.51
VAPB-205ENST00000476395 GAPVD1Q14C86 1478 aa11.84□□□□□ -0.51
VAPB-205ENST00000476395 PLPPR3Q6T4P5 718 aa11.84□□□□□ -0.51
VAPB-205ENST00000476395 IRX6P78412 446 aaPredicted RBP11.83□□□□□ -0.52
VAPB-205ENST00000476395 DEKP35659 375 aaKnown RBP11.8□□□□□ -0.52
VAPB-205ENST00000476395 CCDC136Q96JN2 1154 aa11.8□□□□□ -0.52
VAPB-205ENST00000476395 WDR62O43379 1518 aa11.79□□□□□ -0.52
VAPB-205ENST00000476395 CCER2I3L3R5 266 aa11.79□□□□□ -0.52
VAPB-205ENST00000476395 ADAMTS12P58397 1594 aa11.79□□□□□ -0.52
VAPB-205ENST00000476395 RTN4Q9NQC3 1192 aaKnown RBP11.78□□□□□ -0.52
VAPB-205ENST00000476395 ATP1B4Q9UN42 357 aaPredicted RBP11.78□□□□□ -0.52
VAPB-205ENST00000476395 SALL2Q9Y467 1007 aaPredicted RBP11.78□□□□□ -0.52
VAPB-205ENST00000476395 CDK13Q14004 1512 aaKnown RBP11.78□□□□□ -0.52
VAPB-205ENST00000476395 PODXL2Q9NZ53 605 aa11.77□□□□□ -0.52
VAPB-205ENST00000476395 MTUS2Q5JR59 1369 aa11.77□□□□□ -0.53
VAPB-205ENST00000476395 EPRSP07814 1512 aaKnown RBP11.76□□□□□ -0.53
VAPB-205ENST00000476395 NEFLP07196 543 aa11.76□□□□□ -0.53
VAPB-205ENST00000476395 AKNAQ7Z591 1439 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms