RNA–Protein interactions for RNA: ENST00000475558.5

SHQ1-207, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 5

Gene SHQ1, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-207ENST00000475558 MAGI1Q96QZ7 1491 aaPredicted RBP11.98□□□□□ -0.49
SHQ1-207ENST00000475558 FGD5Q6ZNL6 1462 aa11.97□□□□□ -0.49
SHQ1-207ENST00000475558 GRIN2BQ13224 1484 aa11.96□□□□□ -0.49
SHQ1-207ENST00000475558 NPM3O75607 178 aaKnown RBP11.95□□□□□ -0.5
SHQ1-207ENST00000475558 SYNJ2O15056 1496 aa11.95□□□□□ -0.5
SHQ1-207ENST00000475558 CUX1P39880 1505 aa11.91□□□□□ -0.5
SHQ1-207ENST00000475558 GAPVD1Q14C86 1478 aa11.89□□□□□ -0.51
SHQ1-207ENST00000475558 PBRM1Q86U86 1689 aa11.85□□□□□ -0.51
SHQ1-207ENST00000475558 ABCA10Q8WWZ4 1543 aa11.84□□□□□ -0.51
SHQ1-207ENST00000475558 ABCA5Q8WWZ7 1642 aa11.81□□□□□ -0.52
SHQ1-207ENST00000475558 GRIN2AQ12879 1464 aa11.79□□□□□ -0.52
SHQ1-207ENST00000475558 WRNQ14191 1432 aaPredicted RBP eCLIP11.77□□□□□ -0.52
SHQ1-207ENST00000475558 NUP160Q12769 1436 aa11.77□□□□□ -0.53
SHQ1-207ENST00000475558 ERCC6L2Q5T890 1561 aa11.76□□□□□ -0.53
SHQ1-207ENST00000475558 CEP170Q5SW79 1584 aa11.75□□□□□ -0.53
SHQ1-207ENST00000475558 FHAD1B1AJZ9 1412 aa11.74□□□□□ -0.53
SHQ1-207ENST00000475558 ADAMTS12P58397 1594 aa11.73□□□□□ -0.53
SHQ1-207ENST00000475558 SHROOM2Q13796 1616 aa11.72□□□□□ -0.53
SHQ1-207ENST00000475558 U3KPZ7 1027 aaPredicted RBP11.71□□□□□ -0.53
SHQ1-207ENST00000475558 JPH4Q96JJ6 628 aa11.69□□□□□ -0.54
SHQ1-207ENST00000475558 ERICH3Q5RHP9 1530 aa11.69□□□□□ -0.54
SHQ1-207ENST00000475558 PRG4Q92954 1404 aaPredicted RBP11.69□□□□□ -0.54
SHQ1-207ENST00000475558 TOP2BQ02880 1626 aa11.68□□□□□ -0.54
SHQ1-207ENST00000475558 BIVM-ERCC5R4GMW8 1640 aa11.68□□□□□ -0.54
SHQ1-207ENST00000475558 CAPN15O75808 1086 aa11.67□□□□□ -0.54
SHQ1-207ENST00000475558 NPM1P06748 294 aaKnown RBP eCLIP11.67□□□□□ -0.54
SHQ1-207ENST00000475558 KIF13AQ9H1H9 1805 aa11.67□□□□□ -0.54
SHQ1-207ENST00000475558 FAM69CQ0P6D2 419 aa11.65□□□□□ -0.54
SHQ1-207ENST00000475558 ABCC10Q5T3U5 1492 aa11.62□□□□□ -0.55
SHQ1-207ENST00000475558 SPINK5Q9NQ38 1064 aaPredicted RBP11.61□□□□□ -0.55
SHQ1-207ENST00000475558 MAPKBP1O60336 1514 aa11.59□□□□□ -0.55
SHQ1-207ENST00000475558 RUSC2Q8N2Y8 1516 aa11.57□□□□□ -0.56
SHQ1-207ENST00000475558 DSG3P32926 999 aa11.57□□□□□ -0.56
SHQ1-207ENST00000475558 DIP2BQ9P265 1576 aa11.55□□□□□ -0.56
SHQ1-207ENST00000475558 ADCY10Q96PN6 1610 aa11.54□□□□□ -0.56
SHQ1-207ENST00000475558 KCNA4P22459 653 aa11.54□□□□□ -0.56
SHQ1-207ENST00000475558 KIAA0586Q9BVV6 1533 aa11.54□□□□□ -0.56
SHQ1-207ENST00000475558 KDM4FA0A1W2PPD8 638 aa11.53□□□□□ -0.56
SHQ1-207ENST00000475558 KDM6BO15054 1643 aa11.53□□□□□ -0.56
SHQ1-207ENST00000475558 IGF1RP08069 1367 aa11.51□□□□□ -0.57
SHQ1-207ENST00000475558 TSPOAP1O95153 1857 aa11.5□□□□□ -0.57
SHQ1-207ENST00000475558 PTPRGP23470 1445 aa11.49□□□□□ -0.57
SHQ1-207ENST00000475558 KIF27Q86VH2 1401 aa11.48□□□□□ -0.57
SHQ1-207ENST00000475558 CUL7Q14999 1698 aa11.47□□□□□ -0.57
SHQ1-207ENST00000475558 CARMIL2Q6F5E8 1435 aa11.45□□□□□ -0.58
SHQ1-207ENST00000475558 TNIKQ9UKE5 1360 aa11.45□□□□□ -0.58
SHQ1-207ENST00000475558 APLP2Q06481 763 aa11.45□□□□□ -0.58
SHQ1-207ENST00000475558 TTBK1Q5TCY1 1321 aaPredicted RBP11.44□□□□□ -0.58
SHQ1-207ENST00000475558 SLC4A2P04920 1241 aa11.44□□□□□ -0.58
SHQ1-207ENST00000475558 POTEHQ6S545 545 aa11.44□□□□□ -0.58
SHQ1-207ENST00000475558 PLB1Q6P1J6 1458 aa11.44□□□□□ -0.58
SHQ1-207ENST00000475558 ABCC2Q92887 1545 aa11.43□□□□□ -0.58
SHQ1-207ENST00000475558 CARMIL1Q5VZK9 1371 aa11.42□□□□□ -0.58
SHQ1-207ENST00000475558 ASXL2Q76L83 1435 aa11.42□□□□□ -0.58
SHQ1-207ENST00000475558 GLI2P10070 1586 aa11.41□□□□□ -0.58
SHQ1-207ENST00000475558 ILDR1Q86SU0 546 aaPredicted RBP11.41□□□□□ -0.58
SHQ1-207ENST00000475558 EEA1Q15075 1411 aa11.41□□□□□ -0.58
SHQ1-207ENST00000475558 UHRF1BP1LA0JNW5 1464 aa11.39□□□□□ -0.59
SHQ1-207ENST00000475558 ZNF219Q9P2Y4 722 aaPredicted RBP11.39□□□□□ -0.59
SHQ1-207ENST00000475558 UACAQ9BZF9 1416 aa11.38□□□□□ -0.59
SHQ1-207ENST00000475558 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.38□□□□□ -0.59
SHQ1-207ENST00000475558 HNRNPUL2Q1KMD3 747 aaKnown RBP11.38□□□□□ -0.59
SHQ1-207ENST00000475558 ABCB7O75027 752 aa11.37□□□□□ -0.59
SHQ1-207ENST00000475558 CSRNP3Q8WYN3 585 aa11.37□□□□□ -0.59
SHQ1-207ENST00000475558 ADGRL1O94910 1474 aa11.37□□□□□ -0.59
SHQ1-207ENST00000475558 IQGAP2Q13576 1575 aa11.37□□□□□ -0.59
SHQ1-207ENST00000475558 PPRC1Q5VV67 1664 aaKnown RBP11.36□□□□□ -0.59
SHQ1-207ENST00000475558 TEX14Q8IWB6 1497 aa11.34□□□□□ -0.59
SHQ1-207ENST00000475558 EPRSP07814 1512 aaKnown RBP11.34□□□□□ -0.59
SHQ1-207ENST00000475558 KDM5BQ9UGL1 1544 aa11.34□□□□□ -0.59
SHQ1-207ENST00000475558 COL17A1Q9UMD9 1497 aaPredicted RBP11.33□□□□□ -0.6
SHQ1-207ENST00000475558 DISP1Q96F81 1524 aa11.33□□□□□ -0.6
SHQ1-207ENST00000475558 MAP3K4Q9Y6R4 1608 aa11.31□□□□□ -0.6
SHQ1-207ENST00000475558 UGGT2Q9NYU1 1516 aa11.3□□□□□ -0.6
SHQ1-207ENST00000475558 RAPGEF2Q9Y4G8 1499 aa11.29□□□□□ -0.6
SHQ1-207ENST00000475558 ZCCHC11Q5TAX3 1644 aaKnown RBP11.28□□□□□ -0.6
SHQ1-207ENST00000475558 SAMD1Q6SPF0 538 aaPredicted RBP11.28□□□□□ -0.6
SHQ1-207ENST00000475558 FAM9AQ8IZU1 332 aaPredicted RBP11.28□□□□□ -0.6
SHQ1-207ENST00000475558 HECW2Q9P2P5 1572 aa11.27□□□□□ -0.61
SHQ1-207ENST00000475558 WDR7Q9Y4E6 1490 aa11.26□□□□□ -0.61
SHQ1-207ENST00000475558 KIAA0556O60303 1618 aa11.26□□□□□ -0.61
SHQ1-207ENST00000475558 CD109Q6YHK3 1445 aa11.25□□□□□ -0.61
SHQ1-207ENST00000475558 MAGI3Q5TCQ9 1506 aa11.24□□□□□ -0.61
SHQ1-207ENST00000475558 KCNH8Q96L42 1107 aa11.23□□□□□ -0.61
SHQ1-207ENST00000475558 GOLGA3Q08378 1498 aa11.22□□□□□ -0.61
SHQ1-207ENST00000475558 CFAP43Q8NDM7 1665 aa11.21□□□□□ -0.61
SHQ1-207ENST00000475558 LOC105371045A0A1W2PR82 267 aa11.2□□□□□ -0.62
SHQ1-207ENST00000475558 UBTFP17480 764 aaKnown RBP11.19□□□□□ -0.62
SHQ1-207ENST00000475558 ABCA8O94911 1581 aa11.18□□□□□ -0.62
SHQ1-207ENST00000475558 CTTNBP2Q8WZ74 1663 aa11.17□□□□□ -0.62
SHQ1-207ENST00000475558 FBXO41Q8TF61 875 aa11.16□□□□□ -0.62
SHQ1-207ENST00000475558 PHLDB1Q86UU1 1377 aa11.16□□□□□ -0.62
SHQ1-207ENST00000475558 ARAP3Q8WWN8 1544 aa11.15□□□□□ -0.62
SHQ1-207ENST00000475558 KIF21BO75037 1637 aa11.13□□□□□ -0.63
SHQ1-207ENST00000475558 PRXQ9BXM0 1461 aa11.12□□□□□ -0.63
SHQ1-207ENST00000475558 RBM42Q9BTD8 480 aaKnown RBP11.12□□□□□ -0.63
SHQ1-207ENST00000475558 ATP10BO94823 1461 aa11.11□□□□□ -0.63
SHQ1-207ENST00000475558 ARID3CA6NKF2 412 aa11.1□□□□□ -0.63
SHQ1-207ENST00000475558 MYCNP04198 464 aaPredicted RBP11.1□□□□□ -0.63
SHQ1-207ENST00000475558 PTPRMP28827 1452 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms