RNA–Protein interactions for RNA: ENST00000474825.1

ATG4A-207, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-207ENST00000474825 RUSC2Q8N2Y8 1516 aa10.88□□□□□ -0.67
ATG4A-207ENST00000474825 SP7Q8TDD2 431 aaPredicted RBP10.87□□□□□ -0.67
ATG4A-207ENST00000474825 CSRNP3Q8WYN3 585 aa10.87□□□□□ -0.67
ATG4A-207ENST00000474825 WDR62O43379 1518 aa10.86□□□□□ -0.67
ATG4A-207ENST00000474825 ABCA10Q8WWZ4 1543 aa10.86□□□□□ -0.67
ATG4A-207ENST00000474825 POLA2Q14181 598 aa10.86□□□□□ -0.67
ATG4A-207ENST00000474825 KIF27Q86VH2 1401 aa10.84□□□□□ -0.67
ATG4A-207ENST00000474825 FAM9AQ8IZU1 332 aaPredicted RBP10.82□□□□□ -0.68
ATG4A-207ENST00000474825 THOC2Q8NI27 1593 aaKnown RBP10.82□□□□□ -0.68
ATG4A-207ENST00000474825 LOC105371045A0A1W2PR82 267 aa10.81□□□□□ -0.68
ATG4A-207ENST00000474825 MYCNP04198 464 aaPredicted RBP10.81□□□□□ -0.68
ATG4A-207ENST00000474825 RAD54L2Q9Y4B4 1467 aa10.81□□□□□ -0.68
ATG4A-207ENST00000474825 IGF1RP08069 1367 aa10.8□□□□□ -0.68
ATG4A-207ENST00000474825 PRXQ9BXM0 1461 aa10.8□□□□□ -0.68
ATG4A-207ENST00000474825 TARBP1Q13395 1621 aaKnown RBP10.8□□□□□ -0.68
ATG4A-207ENST00000474825 AKT1S1Q96B36 256 aa10.79□□□□□ -0.68
ATG4A-207ENST00000474825 WDR97A6NE52 1622 aa10.77□□□□□ -0.68
ATG4A-207ENST00000474825 KIF21BO75037 1637 aa10.77□□□□□ -0.68
ATG4A-207ENST00000474825 IFT140Q96RY7 1462 aa10.77□□□□□ -0.69
ATG4A-207ENST00000474825 TNIKQ9UKE5 1360 aa10.75□□□□□ -0.69
ATG4A-207ENST00000474825 GOLGA3Q08378 1498 aa10.74□□□□□ -0.69
ATG4A-207ENST00000474825 ERICH3Q5RHP9 1530 aa10.74□□□□□ -0.69
ATG4A-207ENST00000474825 ABCA5Q8WWZ7 1642 aa10.74□□□□□ -0.69
ATG4A-207ENST00000474825 GAPVD1Q14C86 1478 aa10.72□□□□□ -0.69
ATG4A-207ENST00000474825 TDRD9Q8NDG6 1382 aaKnown RBP10.71□□□□□ -0.69
ATG4A-207ENST00000474825 RAPGEF2Q9Y4G8 1499 aa10.71□□□□□ -0.69
ATG4A-207ENST00000474825 CARMIL1Q5VZK9 1371 aa10.7□□□□□ -0.7
ATG4A-207ENST00000474825 PIP4P2Q8N4L2 257 aa10.68□□□□□ -0.7
ATG4A-207ENST00000474825 ZBTB12Q9Y330 459 aaPredicted RBP10.68□□□□□ -0.7
ATG4A-207ENST00000474825 ZNF608Q9ULD9 1512 aaPredicted RBP10.67□□□□□ -0.7
ATG4A-207ENST00000474825 GRIN2BQ13224 1484 aa10.67□□□□□ -0.7
ATG4A-207ENST00000474825 AQRO60306 1485 aaKnown RBP eCLIP10.66□□□□□ -0.71e-6■■■■■ 33.8
ATG4A-207ENST00000474825 CUL7Q14999 1698 aa10.66□□□□□ -0.7
ATG4A-207ENST00000474825 REM2Q8IYK8 340 aaPredicted RBP10.65□□□□□ -0.7
ATG4A-207ENST00000474825 UBTFP17480 764 aaKnown RBP10.63□□□□□ -0.71
ATG4A-207ENST00000474825 FHAD1B1AJZ9 1412 aa10.63□□□□□ -0.71
ATG4A-207ENST00000474825 CEP162Q5TB80 1403 aa10.62□□□□□ -0.71
ATG4A-207ENST00000474825 EIF4G3O43432 1585 aaKnown RBP10.6□□□□□ -0.71
ATG4A-207ENST00000474825 MAGI1Q96QZ7 1491 aaPredicted RBP10.59□□□□□ -0.71
ATG4A-207ENST00000474825 ADAMTS12P58397 1594 aa10.59□□□□□ -0.71
ATG4A-207ENST00000474825 PBRM1Q86U86 1689 aa10.58□□□□□ -0.72
ATG4A-207ENST00000474825 EHMT2Q96KQ7 1210 aa10.58□□□□□ -0.72
ATG4A-207ENST00000474825 HAX1O00165 279 aa10.57□□□□□ -0.72
ATG4A-207ENST00000474825 FXR2P51116 673 aaKnown RBP eCLIP10.57□□□□□ -0.72
ATG4A-207ENST00000474825 OSCARQ8IYS5 282 aa10.57□□□□□ -0.72
ATG4A-207ENST00000474825 SNAPC4Q5SXM2 1469 aa10.56□□□□□ -0.72
ATG4A-207ENST00000474825 CLIP1P30622 1438 aa10.56□□□□□ -0.72
ATG4A-207ENST00000474825 PITPNM1O00562 1244 aa10.54□□□□□ -0.72
ATG4A-207ENST00000474825 SYNJ2O15056 1496 aa10.54□□□□□ -0.72
ATG4A-207ENST00000474825 ATF5Q9Y2D1 282 aaPredicted RBP10.53□□□□□ -0.72
ATG4A-207ENST00000474825 GRIN2AQ12879 1464 aa10.52□□□□□ -0.73
ATG4A-207ENST00000474825 ARHGAP35Q9NRY4 1499 aa10.5□□□□□ -0.73
ATG4A-207ENST00000474825 NUP160Q12769 1436 aa10.5□□□□□ -0.73
ATG4A-207ENST00000474825 KIAA0586Q9BVV6 1533 aa10.49□□□□□ -0.73
ATG4A-207ENST00000474825 ARAP1Q96P48 1450 aa10.49□□□□□ -0.73
ATG4A-207ENST00000474825 VPS8Q8N3P4 1428 aa10.48□□□□□ -0.73
ATG4A-207ENST00000474825 EFCAB5A4FU69 1503 aa10.48□□□□□ -0.73
ATG4A-207ENST00000474825 CHMP7Q8WUX9 453 aaPredicted RBP10.47□□□□□ -0.73
ATG4A-207ENST00000474825 CTTNBP2Q8WZ74 1663 aa10.47□□□□□ -0.73
ATG4A-207ENST00000474825 FOXD4L1Q9NU39 408 aa10.46□□□□□ -0.73
ATG4A-207ENST00000474825 UGGT2Q9NYU1 1516 aa10.45□□□□□ -0.74
ATG4A-207ENST00000474825 SAMD9Q5K651 1589 aa10.44□□□□□ -0.74
ATG4A-207ENST00000474825 IQGAP2Q13576 1575 aa10.43□□□□□ -0.74
ATG4A-207ENST00000474825 CEP170Q5SW79 1584 aa10.43□□□□□ -0.74
ATG4A-207ENST00000474825 FBLN2P98095 1184 aa10.41□□□□□ -0.74
ATG4A-207ENST00000474825 EVX2Q03828 476 aa10.4□□□□□ -0.74
ATG4A-207ENST00000474825 DISP1Q96F81 1524 aa10.39□□□□□ -0.75
ATG4A-207ENST00000474825 JPH4Q96JJ6 628 aa10.38□□□□□ -0.75
ATG4A-207ENST00000474825 MAP3K1Q13233 1512 aa10.38□□□□□ -0.75
ATG4A-207ENST00000474825 RANGAP1P46060 587 aaPredicted RBP10.37□□□□□ -0.75
ATG4A-207ENST00000474825 FHOD3Q2V2M9 1422 aa10.37□□□□□ -0.75
ATG4A-207ENST00000474825 FMN1Q68DA7 1419 aa10.37□□□□□ -0.75
ATG4A-207ENST00000474825 CASKIN1Q8WXD9 1431 aa10.36□□□□□ -0.75
ATG4A-207ENST00000474825 CLASP1Q7Z460 1538 aa10.34□□□□□ -0.75
ATG4A-207ENST00000474825 CHD1O14646 1710 aa10.34□□□□□ -0.75
ATG4A-207ENST00000474825 FYCO1Q9BQS8 1478 aa10.34□□□□□ -0.75
ATG4A-207ENST00000474825 KIAA0556O60303 1618 aa10.33□□□□□ -0.76
ATG4A-207ENST00000474825 SHROOM2Q13796 1616 aa10.33□□□□□ -0.76
ATG4A-207ENST00000474825 CARMIL2Q6F5E8 1435 aa10.33□□□□□ -0.76
ATG4A-207ENST00000474825 P3H3Q8IVL6 736 aa10.32□□□□□ -0.76
ATG4A-207ENST00000474825 SPDYE2BA6NHP3 402 aa10.31□□□□□ -0.76
ATG4A-207ENST00000474825 SPDYE6P0CI01 402 aa10.31□□□□□ -0.76
ATG4A-207ENST00000474825 SPDYE2Q495Y8 402 aa10.31□□□□□ -0.76
ATG4A-207ENST00000474825 CYB5RLQ6IPT4 315 aa10.31□□□□□ -0.76
ATG4A-207ENST00000474825 SLC4A1APQ9BWU0 796 aaKnown RBP10.31□□□□□ -0.76
ATG4A-207ENST00000474825 TRIM26Q12899 539 aaPredicted RBP10.3□□□□□ -0.76
ATG4A-207ENST00000474825 PRG4Q92954 1404 aaPredicted RBP10.29□□□□□ -0.76
ATG4A-207ENST00000474825 PCF11O94913 1555 aaKnown RBP10.29□□□□□ -0.76
ATG4A-207ENST00000474825 RIMBP3CA6NJZ7 1639 aa10.29□□□□□ -0.76
ATG4A-207ENST00000474825 RIMBP3BA6NNM3 1639 aa10.29□□□□□ -0.76
ATG4A-207ENST00000474825 RIMBP3Q9UFD9 1639 aa10.29□□□□□ -0.76
ATG4A-207ENST00000474825 TIAM1Q13009 1591 aa10.27□□□□□ -0.76
ATG4A-207ENST00000474825 ARHGEF11O15085 1522 aa10.27□□□□□ -0.77
ATG4A-207ENST00000474825 PRKAR2AP13861 404 aaKnown RBP10.26□□□□□ -0.77
ATG4A-207ENST00000474825 KANK4Q5T7N3 995 aaPredicted RBP10.26□□□□□ -0.77
ATG4A-207ENST00000474825 LRRC9Q6ZRR7 1453 aa10.25□□□□□ -0.77
ATG4A-207ENST00000474825 CCDC18Q5T9S5 1454 aa10.24□□□□□ -0.77
ATG4A-207ENST00000474825 C19orf67A6NJJ6 358 aa10.24□□□□□ -0.77
ATG4A-207ENST00000474825 CFAP43Q8NDM7 1665 aa10.24□□□□□ -0.77
ATG4A-207ENST00000474825 ABCA8O94911 1581 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms