RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 LRRC9Q6ZRR7 1453 aa30.6■■■□□ 2.49
COL18A1-207ENST00000473212 FAM50AQ14320 339 aaKnown RBP30.59■■■□□ 2.49
COL18A1-207ENST00000473212 MAPKBP1O60336 1514 aa30.59■■■□□ 2.49
COL18A1-207ENST00000473212 FANCD2Q9BXW9 1451 aa30.58■■■□□ 2.49
COL18A1-207ENST00000473212 PCF11O94913 1555 aaKnown RBP30.54■■■□□ 2.48
COL18A1-207ENST00000473212 FHOD3Q2V2M9 1422 aa30.53■■■□□ 2.48
COL18A1-207ENST00000473212 SIN3AQ96ST3 1273 aa30.51■■■□□ 2.48
COL18A1-207ENST00000473212 NESP48681 1621 aa30.51■■■□□ 2.47
COL18A1-207ENST00000473212 MYT1Q01538 1121 aa30.49■■■□□ 2.47
COL18A1-207ENST00000473212 MAP3K1Q13233 1512 aa30.49■■■□□ 2.47
COL18A1-207ENST00000473212 SETD5Q9C0A6 1442 aa30.48■■■□□ 2.47
COL18A1-207ENST00000473212 KCNH8Q96L42 1107 aa30.46■■■□□ 2.47
COL18A1-207ENST00000473212 POLA1P09884 1462 aaPredicted RBP30.43■■■□□ 2.46
COL18A1-207ENST00000473212 FHAD1B1AJZ9 1412 aa30.42■■■□□ 2.46
COL18A1-207ENST00000473212 SUPT16HQ9Y5B9 1047 aaKnown RBP30.4■■■□□ 2.46
COL18A1-207ENST00000473212 TOPBP1Q92547 1522 aa30.39■■■□□ 2.46
COL18A1-207ENST00000473212 CFAP43Q8NDM7 1665 aa30.39■■■□□ 2.46
COL18A1-207ENST00000473212 DNMBPQ6XZF7 1577 aa30.36■■■□□ 2.45
COL18A1-207ENST00000473212 ABCA10Q8WWZ4 1543 aa30.35■■■□□ 2.45
COL18A1-207ENST00000473212 WDR97A6NE52 1622 aa30.34■■■□□ 2.45
COL18A1-207ENST00000473212 HIRIP3Q9BW71 556 aaPredicted RBP30.31■■■□□ 2.44
COL18A1-207ENST00000473212 DDX10Q13206 875 aaKnown RBP30.25■■■□□ 2.43
COL18A1-207ENST00000473212 FYCO1Q9BQS8 1478 aa30.24■■■□□ 2.43
COL18A1-207ENST00000473212 CASKIN1Q8WXD9 1431 aa30.23■■■□□ 2.43
COL18A1-207ENST00000473212 TDRD9Q8NDG6 1382 aaKnown RBP30.22■■■□□ 2.43
COL18A1-207ENST00000473212 DNAJC5BQ9UF47 199 aa30.2■■■□□ 2.42
COL18A1-207ENST00000473212 URB2Q14146 1524 aaKnown RBP30.18■■■□□ 2.42
COL18A1-207ENST00000473212 CTTNBP2Q8WZ74 1663 aa30.18■■■□□ 2.42
COL18A1-207ENST00000473212 EFCAB5A4FU69 1503 aa30.17■■■□□ 2.42
COL18A1-207ENST00000473212 CUL7Q14999 1698 aa30.14■■■□□ 2.42
COL18A1-207ENST00000473212 SNAPC4Q5SXM2 1469 aa30.13■■■□□ 2.41
COL18A1-207ENST00000473212 PTPRKQ15262 1439 aa30.12■■■□□ 2.41
COL18A1-207ENST00000473212 FGD6Q6ZV73 1430 aa30.11■■■□□ 2.41
COL18A1-207ENST00000473212 AQRO60306 1485 aaKnown RBP eCLIP30.1■■■□□ 2.414e-7■■■■□ 21.4
COL18A1-207ENST00000473212 MTUS2Q5JR59 1369 aa30.08■■■□□ 2.41
COL18A1-207ENST00000473212 LRRIQ1Q96JM4 1722 aa30.07■■■□□ 2.4
COL18A1-207ENST00000473212 PPP1R15AO75807 674 aaPredicted RBP30.06■■■□□ 2.4
COL18A1-207ENST00000473212 FMN1Q68DA7 1419 aa30.06■■■□□ 2.4
COL18A1-207ENST00000473212 TIMELESSQ9UNS1 1208 aa30■■■□□ 2.39
COL18A1-207ENST00000473212 CCDC18Q5T9S5 1454 aa30■■■□□ 2.39
COL18A1-207ENST00000473212 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.99■■■□□ 2.391e-6■■■■□ 20
COL18A1-207ENST00000473212 GAPVD1Q14C86 1478 aa29.99■■■□□ 2.39
COL18A1-207ENST00000473212 TSHZ2Q9NRE2 1034 aa29.98■■■□□ 2.39
COL18A1-207ENST00000473212 ABCA5Q8WWZ7 1642 aa29.97■■■□□ 2.39
COL18A1-207ENST00000473212 NCOA2Q15596 1464 aa29.95■■■□□ 2.39
COL18A1-207ENST00000473212 SAMD9Q5K651 1589 aa29.95■■■□□ 2.39
COL18A1-207ENST00000473212 LAMC3Q9Y6N6 1575 aa29.92■■■□□ 2.38
COL18A1-207ENST00000473212 GRIN2BQ13224 1484 aa29.92■■■□□ 2.38
COL18A1-207ENST00000473212 TONSLQ96HA7 1378 aa29.91■■■□□ 2.38
COL18A1-207ENST00000473212 BCANQ96GW7 911 aa29.9■■■□□ 2.38
COL18A1-207ENST00000473212 PTPN23Q9H3S7 1636 aa29.9■■■□□ 2.38
COL18A1-207ENST00000473212 HFM1A2PYH4 1435 aa29.9■■■□□ 2.38
COL18A1-207ENST00000473212 ARID3CA6NKF2 412 aa29.88■■■□□ 2.37
COL18A1-207ENST00000473212 NAIPQ13075 1403 aa29.88■■■□□ 2.37
COL18A1-207ENST00000473212 CHIC2Q9UKJ5 165 aa29.88■■■□□ 2.37
COL18A1-207ENST00000473212 MYOM3Q5VTT5 1437 aa29.88■■■□□ 2.37
COL18A1-207ENST00000473212 MAGI3Q5TCQ9 1506 aa29.87■■■□□ 2.37
COL18A1-207ENST00000473212 RRP7BPQ9NSQ0 103 aa29.86■■■□□ 2.37
COL18A1-207ENST00000473212 UACAQ9BZF9 1416 aa29.85■■■□□ 2.37
COL18A1-207ENST00000473212 TRIM52Q96A61 297 aa29.84■■■□□ 2.37
COL18A1-207ENST00000473212 FKBP8Q14318 412 aa29.84■■■□□ 2.37
COL18A1-207ENST00000473212 KIF21AQ7Z4S6 1674 aa29.83■■■□□ 2.37
COL18A1-207ENST00000473212 ANP32CO43423 234 aa29.8■■■□□ 2.36
COL18A1-207ENST00000473212 PDS5BQ9NTI5 1447 aa29.78■■■□□ 2.36
COL18A1-207ENST00000473212 CCER2I3L3R5 266 aa29.78■■■□□ 2.36
COL18A1-207ENST00000473212 SUPT6HQ7KZ85 1726 aaKnown RBP29.78■■■□□ 2.36
COL18A1-207ENST00000473212 EHBP1L1Q8N3D4 1523 aa29.74■■■□□ 2.35
COL18A1-207ENST00000473212 UGGT2Q9NYU1 1516 aa29.73■■■□□ 2.35
COL18A1-207ENST00000473212 TARBP1Q13395 1621 aaKnown RBP29.72■■■□□ 2.35
COL18A1-207ENST00000473212 KDM5BQ9UGL1 1544 aa29.72■■■□□ 2.35
COL18A1-207ENST00000473212 KDM6BO15054 1643 aa29.68■■■□□ 2.34
COL18A1-207ENST00000473212 CDK13Q14004 1512 aaKnown RBP29.67■■■□□ 2.34
COL18A1-207ENST00000473212 DENND4BO75064 1496 aaPredicted RBP29.67■■■□□ 2.34
COL18A1-207ENST00000473212 ARHGEF11O15085 1522 aa29.67■■■□□ 2.34
COL18A1-207ENST00000473212 THOC2Q8NI27 1593 aaKnown RBP29.67■■■□□ 2.34
COL18A1-207ENST00000473212 FOXD1Q16676 465 aa29.65■■■□□ 2.34
COL18A1-207ENST00000473212 NEFLP07196 543 aa29.65■■■□□ 2.34
COL18A1-207ENST00000473212 EPRSP07814 1512 aaKnown RBP29.6■■■□□ 2.33
COL18A1-207ENST00000473212 PBRM1Q86U86 1689 aa29.59■■■□□ 2.33
COL18A1-207ENST00000473212 IQGAP2Q13576 1575 aa29.57■■■□□ 2.32
COL18A1-207ENST00000473212 HSPA5P11021 654 aaKnown RBP29.55■■■□□ 2.32
COL18A1-207ENST00000473212 HECW1Q76N89 1606 aa29.55■■■□□ 2.32
COL18A1-207ENST00000473212 TCOF1Q13428 1488 aaKnown RBP29.55■■■□□ 2.32
COL18A1-207ENST00000473212 WASHC2AQ641Q2 1341 aa29.53■■■□□ 2.32
COL18A1-207ENST00000473212 ANP32EQ9BTT0 268 aa29.52■■■□□ 2.32
COL18A1-207ENST00000473212 ADAMTS12P58397 1594 aa29.51■■■□□ 2.31
COL18A1-207ENST00000473212 MPHOSPH9Q99550 1183 aa29.5■■■□□ 2.31
COL18A1-207ENST00000473212 GCC2Q8IWJ2 1684 aa29.5■■■□□ 2.31
COL18A1-207ENST00000473212 ZNF644Q9H582 1327 aaPredicted RBP29.48■■■□□ 2.31
COL18A1-207ENST00000473212 WDR62O43379 1518 aa29.47■■■□□ 2.31
COL18A1-207ENST00000473212 L3MBTL2Q969R5 705 aa29.46■■■□□ 2.31
COL18A1-207ENST00000473212 ZNF608Q9ULD9 1512 aaPredicted RBP29.46■■■□□ 2.31
COL18A1-207ENST00000473212 C11orf95C9JLR9 678 aaPredicted RBP29.42■■■□□ 2.3
COL18A1-207ENST00000473212 CCDC184Q52MB2 194 aa29.41■■■□□ 2.3
COL18A1-207ENST00000473212 HNRNPUQ00839 825 aaKnown RBP eCLIP29.4■■■□□ 2.3
COL18A1-207ENST00000473212 RBM19Q9Y4C8 960 aaKnown RBP29.39■■■□□ 2.3
COL18A1-207ENST00000473212 MIA2Q96PC5 1412 aa29.38■■■□□ 2.29
COL18A1-207ENST00000473212 EIF4G2P78344 907 aaKnown RBP eCLIP29.36■■■□□ 2.295e-6■■□□□ 12.2
COL18A1-207ENST00000473212 AKNAQ7Z591 1439 aa29.35■■■□□ 2.29
COL18A1-207ENST00000473212 MRC2Q9UBG0 1479 aa29.35■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms