RNA–Protein interactions for RNA: ENST00000471455.1

CPSF4-211, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 569 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-211ENST00000471455 GRIN2BQ13224 1484 aa16.59■□□□□ 0.25
CPSF4-211ENST00000471455 CHMP7Q8WUX9 453 aaPredicted RBP16.58■□□□□ 0.24
CPSF4-211ENST00000471455 CUX1P39880 1505 aa16.58■□□□□ 0.24
CPSF4-211ENST00000471455 CLASP1Q7Z460 1538 aa16.57■□□□□ 0.24
CPSF4-211ENST00000471455 TRHP20396 242 aaPredicted RBP16.57■□□□□ 0.24
CPSF4-211ENST00000471455 SYNJ2O15056 1496 aa16.55■□□□□ 0.24
CPSF4-211ENST00000471455 U3KPZ7 1027 aaPredicted RBP16.53■□□□□ 0.24
CPSF4-211ENST00000471455 GAPVD1Q14C86 1478 aa16.49■□□□□ 0.23
CPSF4-211ENST00000471455 PBRM1Q86U86 1689 aa16.49■□□□□ 0.23
CPSF4-211ENST00000471455 ABCA10Q8WWZ4 1543 aa16.46■□□□□ 0.23
CPSF4-211ENST00000471455 C1QBPQ07021 282 aaKnown RBP16.46■□□□□ 0.23
CPSF4-211ENST00000471455 ABCA5Q8WWZ7 1642 aa16.45■□□□□ 0.22
CPSF4-211ENST00000471455 WRNQ14191 1432 aaPredicted RBP eCLIP16.4■□□□□ 0.225e-6■■■■■ 29.2
CPSF4-211ENST00000471455 CACNB1Q02641 598 aaPredicted RBP16.4■□□□□ 0.22
CPSF4-211ENST00000471455 GRIN2AQ12879 1464 aa16.36■□□□□ 0.21
CPSF4-211ENST00000471455 SUPT5HO00267 1087 aaKnown RBP16.35■□□□□ 0.21
CPSF4-211ENST00000471455 ADAMTS12P58397 1594 aa16.34■□□□□ 0.21
CPSF4-211ENST00000471455 ZBTB22O15209 634 aa16.33■□□□□ 0.2
CPSF4-211ENST00000471455 TOP2BQ02880 1626 aa16.32■□□□□ 0.2
CPSF4-211ENST00000471455 BIVM-ERCC5R4GMW8 1640 aa16.32■□□□□ 0.2
CPSF4-211ENST00000471455 FHAD1B1AJZ9 1412 aa16.3■□□□□ 0.2
CPSF4-211ENST00000471455 NUP160Q12769 1436 aa16.3■□□□□ 0.2
CPSF4-211ENST00000471455 ERICH3Q5RHP9 1530 aa16.28■□□□□ 0.2
CPSF4-211ENST00000471455 CEP170Q5SW79 1584 aa16.27■□□□□ 0.2
CPSF4-211ENST00000471455 FOXD4L1Q9NU39 408 aa16.26■□□□□ 0.19
CPSF4-211ENST00000471455 SHROOM2Q13796 1616 aa16.24■□□□□ 0.19
CPSF4-211ENST00000471455 ERCC6L2Q5T890 1561 aa16.22■□□□□ 0.19
CPSF4-211ENST00000471455 MYCNP04198 464 aaPredicted RBP16.15■□□□□ 0.18
CPSF4-211ENST00000471455 PRG4Q92954 1404 aaPredicted RBP16.15■□□□□ 0.18
CPSF4-211ENST00000471455 SPINK5Q9NQ38 1064 aaPredicted RBP16.13■□□□□ 0.17
CPSF4-211ENST00000471455 RUSC2Q8N2Y8 1516 aa16.11■□□□□ 0.17
CPSF4-211ENST00000471455 JPH4Q96JJ6 628 aa16.11■□□□□ 0.17
CPSF4-211ENST00000471455 NPM1P06748 294 aaKnown RBP eCLIP16.07■□□□□ 0.16
CPSF4-211ENST00000471455 KIF13AQ9H1H9 1805 aa16.05■□□□□ 0.16
CPSF4-211ENST00000471455 CUL7Q14999 1698 aa16.04■□□□□ 0.16
CPSF4-211ENST00000471455 KIF27Q86VH2 1401 aa16.03■□□□□ 0.16
CPSF4-211ENST00000471455 MAPKBP1O60336 1514 aa16.03■□□□□ 0.16
CPSF4-211ENST00000471455 KIAA0586Q9BVV6 1533 aa16.02■□□□□ 0.15
CPSF4-211ENST00000471455 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.01■□□□□ 0.15
CPSF4-211ENST00000471455 HNRNPUL2Q1KMD3 747 aaKnown RBP16.01■□□□□ 0.15
CPSF4-211ENST00000471455 ABCC10Q5T3U5 1492 aa16.01■□□□□ 0.15
CPSF4-211ENST00000471455 SAMD1Q6SPF0 538 aaPredicted RBP15.99■□□□□ 0.15
CPSF4-211ENST00000471455 FAM69CQ0P6D2 419 aa15.98■□□□□ 0.15
CPSF4-211ENST00000471455 IGF1RP08069 1367 aa15.97■□□□□ 0.15
CPSF4-211ENST00000471455 ADCY10Q96PN6 1610 aa15.97■□□□□ 0.15
CPSF4-211ENST00000471455 DIP2BQ9P265 1576 aa15.96■□□□□ 0.14
CPSF4-211ENST00000471455 CAPN15O75808 1086 aa15.94■□□□□ 0.14
CPSF4-211ENST00000471455 CSRNP3Q8WYN3 585 aa15.93■□□□□ 0.14
CPSF4-211ENST00000471455 CARMIL2Q6F5E8 1435 aa15.91■□□□□ 0.14
CPSF4-211ENST00000471455 EHMT2Q96KQ7 1210 aa15.9■□□□□ 0.14
CPSF4-211ENST00000471455 PTPRGP23470 1445 aa15.9■□□□□ 0.14
CPSF4-211ENST00000471455 CARMIL1Q5VZK9 1371 aa15.89■□□□□ 0.13
CPSF4-211ENST00000471455 KDM6BO15054 1643 aa15.89■□□□□ 0.13
CPSF4-211ENST00000471455 APLP2Q06481 763 aa15.87■□□□□ 0.13
CPSF4-211ENST00000471455 ATF5Q9Y2D1 282 aaPredicted RBP15.87■□□□□ 0.13
CPSF4-211ENST00000471455 TNIKQ9UKE5 1360 aa15.87■□□□□ 0.13
CPSF4-211ENST00000471455 DSG3P32926 999 aa15.86■□□□□ 0.13
CPSF4-211ENST00000471455 IQGAP2Q13576 1575 aa15.85■□□□□ 0.13
CPSF4-211ENST00000471455 ABCC2Q92887 1545 aa15.84■□□□□ 0.13
CPSF4-211ENST00000471455 PLB1Q6P1J6 1458 aa15.82■□□□□ 0.12
CPSF4-211ENST00000471455 TSPOAP1O95153 1857 aa15.81■□□□□ 0.12
CPSF4-211ENST00000471455 UHRF1BP1LA0JNW5 1464 aa15.8■□□□□ 0.12
CPSF4-211ENST00000471455 TTBK1Q5TCY1 1321 aaPredicted RBP15.79■□□□□ 0.12
CPSF4-211ENST00000471455 ZNF219Q9P2Y4 722 aaPredicted RBP15.79■□□□□ 0.12
CPSF4-211ENST00000471455 GLI2P10070 1586 aa15.78■□□□□ 0.12
CPSF4-211ENST00000471455 ASXL2Q76L83 1435 aa15.77■□□□□ 0.12
CPSF4-211ENST00000471455 UACAQ9BZF9 1416 aa15.77■□□□□ 0.12
CPSF4-211ENST00000471455 RAPGEF2Q9Y4G8 1499 aa15.76■□□□□ 0.11
CPSF4-211ENST00000471455 UGGT2Q9NYU1 1516 aa15.74■□□□□ 0.11
CPSF4-211ENST00000471455 DISP1Q96F81 1524 aa15.73■□□□□ 0.11
CPSF4-211ENST00000471455 KDM5BQ9UGL1 1544 aa15.71■□□□□ 0.11
CPSF4-211ENST00000471455 TEX14Q8IWB6 1497 aa15.71■□□□□ 0.1
CPSF4-211ENST00000471455 KIAA0556O60303 1618 aa15.7■□□□□ 0.1
CPSF4-211ENST00000471455 ABCB7O75027 752 aa15.7■□□□□ 0.1
CPSF4-211ENST00000471455 KDM4FA0A1W2PPD8 638 aa15.69■□□□□ 0.1
CPSF4-211ENST00000471455 EPRSP07814 1512 aaKnown RBP15.68■□□□□ 0.1
CPSF4-211ENST00000471455 PPRC1Q5VV67 1664 aaKnown RBP15.68■□□□□ 0.1
CPSF4-211ENST00000471455 ATXN8OSP0DMR3 200 aa15.68■□□□□ 0.1
CPSF4-211ENST00000471455 ZCCHC11Q5TAX3 1644 aaKnown RBP15.66■□□□□ 0.1
CPSF4-211ENST00000471455 MAP3K4Q9Y6R4 1608 aa15.66■□□□□ 0.1
CPSF4-211ENST00000471455 GOLGA3Q08378 1498 aa15.65■□□□□ 0.1
CPSF4-211ENST00000471455 CTTNBP2Q8WZ74 1663 aa15.63■□□□□ 0.09
CPSF4-211ENST00000471455 WDR7Q9Y4E6 1490 aa15.63■□□□□ 0.09
CPSF4-211ENST00000471455 ADGRL1O94910 1474 aa15.61■□□□□ 0.09
CPSF4-211ENST00000471455 FAM9AQ8IZU1 332 aaPredicted RBP15.6■□□□□ 0.09
CPSF4-211ENST00000471455 COL17A1Q9UMD9 1497 aaPredicted RBP15.56■□□□□ 0.08
CPSF4-211ENST00000471455 CFAP43Q8NDM7 1665 aa15.55■□□□□ 0.08
CPSF4-211ENST00000471455 ABCA8O94911 1581 aa15.55■□□□□ 0.08
CPSF4-211ENST00000471455 MAGI3Q5TCQ9 1506 aa15.54■□□□□ 0.08
CPSF4-211ENST00000471455 PRXQ9BXM0 1461 aa15.53■□□□□ 0.08
CPSF4-211ENST00000471455 CD109Q6YHK3 1445 aa15.53■□□□□ 0.08
CPSF4-211ENST00000471455 POLA2Q14181 598 aa15.53■□□□□ 0.08
CPSF4-211ENST00000471455 KCNH8Q96L42 1107 aa15.48■□□□□ 0.07
CPSF4-211ENST00000471455 HECW2Q9P2P5 1572 aa15.44■□□□□ 0.06
CPSF4-211ENST00000471455 PHLDB1Q86UU1 1377 aa15.43■□□□□ 0.06
CPSF4-211ENST00000471455 ARAP3Q8WWN8 1544 aa15.42■□□□□ 0.06
CPSF4-211ENST00000471455 ATP10BO94823 1461 aa15.4■□□□□ 0.06
CPSF4-211ENST00000471455 SAMD9Q5K651 1589 aa15.39■□□□□ 0.05
CPSF4-211ENST00000471455 ABCA9Q8IUA7 1624 aa15.39■□□□□ 0.05
CPSF4-211ENST00000471455 KIF21BO75037 1637 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms