RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 ARID3CA6NKF2 412 aa26.09■■□□□ 1.77
MCF2L-221ENST00000469415 POLA1P09884 1462 aaPredicted RBP26.01■■□□□ 1.75
MCF2L-221ENST00000469415 SIN3AQ96ST3 1273 aa26.01■■□□□ 1.75
MCF2L-221ENST00000469415 PHLDB1Q86UU1 1377 aa26.01■■□□□ 1.75
MCF2L-221ENST00000469415 RRBP1Q9P2E9 1410 aaKnown RBP25.99■■□□□ 1.75
MCF2L-221ENST00000469415 RAB3GAP2Q9H2M9 1393 aa25.99■■□□□ 1.75
MCF2L-221ENST00000469415 TOPBP1Q92547 1522 aa25.98■■□□□ 1.75
MCF2L-221ENST00000469415 HIRIP3Q9BW71 556 aaPredicted RBP25.94■■□□□ 1.74
MCF2L-221ENST00000469415 LRRC9Q6ZRR7 1453 aa25.88■■□□□ 1.73
MCF2L-221ENST00000469415 TIAM1Q13009 1591 aa25.85■■□□□ 1.73
MCF2L-221ENST00000469415 PRDM2Q13029 1718 aa25.84■■□□□ 1.73
MCF2L-221ENST00000469415 FHAD1B1AJZ9 1412 aa25.84■■□□□ 1.73
MCF2L-221ENST00000469415 DNMBPQ6XZF7 1577 aa25.84■■□□□ 1.73
MCF2L-221ENST00000469415 URB2Q14146 1524 aaKnown RBP25.83■■□□□ 1.73
MCF2L-221ENST00000469415 CLSPNQ9HAW4 1339 aa25.82■■□□□ 1.72
MCF2L-221ENST00000469415 ABCA10Q8WWZ4 1543 aa25.81■■□□□ 1.72
MCF2L-221ENST00000469415 PCF11O94913 1555 aaKnown RBP25.79■■□□□ 1.72
MCF2L-221ENST00000469415 MTUS2Q5JR59 1369 aa25.78■■□□□ 1.72
MCF2L-221ENST00000469415 SETD5Q9C0A6 1442 aa25.78■■□□□ 1.72
MCF2L-221ENST00000469415 CHIC2Q9UKJ5 165 aa25.77■■□□□ 1.72
MCF2L-221ENST00000469415 KCNH8Q96L42 1107 aa25.73■■□□□ 1.71
MCF2L-221ENST00000469415 DDX10Q13206 875 aaKnown RBP25.71■■□□□ 1.71
MCF2L-221ENST00000469415 GAPVD1Q14C86 1478 aa25.7■■□□□ 1.7
MCF2L-221ENST00000469415 PDS5BQ9NTI5 1447 aa25.69■■□□□ 1.7
MCF2L-221ENST00000469415 RRP7BPQ9NSQ0 103 aa25.66■■□□□ 1.7
MCF2L-221ENST00000469415 AQRO60306 1485 aaKnown RBP eCLIP25.66■■□□□ 1.7
MCF2L-221ENST00000469415 CASKIN1Q8WXD9 1431 aa25.61■■□□□ 1.69
MCF2L-221ENST00000469415 FBLN2P98095 1184 aa25.6■■□□□ 1.69
MCF2L-221ENST00000469415 MAPKBP1O60336 1514 aa25.6■■□□□ 1.69
MCF2L-221ENST00000469415 FMN1Q68DA7 1419 aa25.58■■□□□ 1.69
MCF2L-221ENST00000469415 TRIM52Q96A61 297 aa25.57■■□□□ 1.68
MCF2L-221ENST00000469415 LAMC3Q9Y6N6 1575 aa25.55■■□□□ 1.68
MCF2L-221ENST00000469415 FYCO1Q9BQS8 1478 aa25.55■■□□□ 1.68
MCF2L-221ENST00000469415 MAP3K1Q13233 1512 aa25.53■■□□□ 1.68
MCF2L-221ENST00000469415 FGD6Q6ZV73 1430 aa25.52■■□□□ 1.68
MCF2L-221ENST00000469415 PTPRKQ15262 1439 aa25.5■■□□□ 1.67
MCF2L-221ENST00000469415 WDR97A6NE52 1622 aa25.47■■□□□ 1.67
MCF2L-221ENST00000469415 KIF21AQ7Z4S6 1674 aa25.47■■□□□ 1.67
MCF2L-221ENST00000469415 CUL7Q14999 1698 aa25.47■■□□□ 1.67
MCF2L-221ENST00000469415 EFCAB5A4FU69 1503 aa25.46■■□□□ 1.67
MCF2L-221ENST00000469415 FOXD1Q16676 465 aa25.46■■□□□ 1.67
MCF2L-221ENST00000469415 TONSLQ96HA7 1378 aa25.44■■□□□ 1.66
MCF2L-221ENST00000469415 SNAPC4Q5SXM2 1469 aa25.44■■□□□ 1.66
MCF2L-221ENST00000469415 PPP1R15AO75807 674 aaPredicted RBP25.43■■□□□ 1.66
MCF2L-221ENST00000469415 NCOA2Q15596 1464 aa25.43■■□□□ 1.66
MCF2L-221ENST00000469415 CFAP43Q8NDM7 1665 aa25.42■■□□□ 1.66
MCF2L-221ENST00000469415 CTTNBP2Q8WZ74 1663 aa25.4■■□□□ 1.66
MCF2L-221ENST00000469415 ZNF608Q9ULD9 1512 aaPredicted RBP25.38■■□□□ 1.65
MCF2L-221ENST00000469415 CCDC18Q5T9S5 1454 aa25.37■■□□□ 1.65
MCF2L-221ENST00000469415 ABCA5Q8WWZ7 1642 aa25.37■■□□□ 1.65
MCF2L-221ENST00000469415 ZNF777Q9ULD5 760 aaPredicted RBP25.34■■□□□ 1.65
MCF2L-221ENST00000469415 ZNF644Q9H582 1327 aaPredicted RBP25.34■■□□□ 1.65
MCF2L-221ENST00000469415 MYOM3Q5VTT5 1437 aa25.34■■□□□ 1.65
MCF2L-221ENST00000469415 BCANQ96GW7 911 aa25.33■■□□□ 1.65
MCF2L-221ENST00000469415 CDK13Q14004 1512 aaKnown RBP25.32■■□□□ 1.64
MCF2L-221ENST00000469415 GRIN2BQ13224 1484 aa25.3■■□□□ 1.64
MCF2L-221ENST00000469415 CHMP7Q8WUX9 453 aaPredicted RBP25.3■■□□□ 1.64
MCF2L-221ENST00000469415 CNGB1Q14028 1251 aaPredicted RBP25.29■■□□□ 1.64
MCF2L-221ENST00000469415 MAGI3Q5TCQ9 1506 aa25.27■■□□□ 1.64
MCF2L-221ENST00000469415 NAIPQ13075 1403 aa25.26■■□□□ 1.63
MCF2L-221ENST00000469415 TARBP1Q13395 1621 aaKnown RBP25.25■■□□□ 1.63
MCF2L-221ENST00000469415 MRC2Q9UBG0 1479 aa25.22■■□□□ 1.63
MCF2L-221ENST00000469415 SAMD9Q5K651 1589 aa25.22■■□□□ 1.63
MCF2L-221ENST00000469415 HFM1A2PYH4 1435 aa25.22■■□□□ 1.63
MCF2L-221ENST00000469415 SUPT16HQ9Y5B9 1047 aaKnown RBP25.22■■□□□ 1.63
MCF2L-221ENST00000469415 LRRIQ1Q96JM4 1722 aa25.22■■□□□ 1.63
MCF2L-221ENST00000469415 ANP32CO43423 234 aa25.21■■□□□ 1.63
MCF2L-221ENST00000469415 ERCC6Q03468 1493 aa25.2■■□□□ 1.62
MCF2L-221ENST00000469415 UACAQ9BZF9 1416 aa25.19■■□□□ 1.62
MCF2L-221ENST00000469415 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.19■■□□□ 1.621e-7■■□□□ 13.6
MCF2L-221ENST00000469415 EPRSP07814 1512 aaKnown RBP25.17■■□□□ 1.62
MCF2L-221ENST00000469415 MPHOSPH9Q99550 1183 aa25.16■■□□□ 1.62
MCF2L-221ENST00000469415 TIMELESSQ9UNS1 1208 aa25.15■■□□□ 1.62
MCF2L-221ENST00000469415 IQGAP2Q13576 1575 aa25.15■■□□□ 1.62
MCF2L-221ENST00000469415 PTPN23Q9H3S7 1636 aa25.13■■□□□ 1.61
MCF2L-221ENST00000469415 ZNF326Q5BKZ1 582 aaKnown RBP25.13■■□□□ 1.61
MCF2L-221ENST00000469415 SUPT6HQ7KZ85 1726 aaKnown RBP25.12■■□□□ 1.61
MCF2L-221ENST00000469415 EHBP1L1Q8N3D4 1523 aa25.12■■□□□ 1.61
MCF2L-221ENST00000469415 THOC2Q8NI27 1593 aaKnown RBP25.11■■□□□ 1.61
MCF2L-221ENST00000469415 POLR3GLQ9BT43 218 aa25.1■■□□□ 1.61
MCF2L-221ENST00000469415 L3MBTL2Q969R5 705 aa25.1■■□□□ 1.61
MCF2L-221ENST00000469415 SLC4A1APQ9BWU0 796 aaKnown RBP25.1■■□□□ 1.61
MCF2L-221ENST00000469415 HSPA5P11021 654 aaKnown RBP25.09■■□□□ 1.61
MCF2L-221ENST00000469415 UGGT2Q9NYU1 1516 aa25.08■■□□□ 1.61
MCF2L-221ENST00000469415 CFDP1Q9UEE9 299 aaPredicted RBP25.08■■□□□ 1.61
MCF2L-221ENST00000469415 CDK11AQ9UQ88 783 aaPredicted RBP25.07■■□□□ 1.6
MCF2L-221ENST00000469415 PBRM1Q86U86 1689 aa25.07■■□□□ 1.6
MCF2L-221ENST00000469415 ADAMTS12P58397 1594 aa25.06■■□□□ 1.6
MCF2L-221ENST00000469415 FKBP8Q14318 412 aa25.06■■□□□ 1.6
MCF2L-221ENST00000469415 PRG4Q92954 1404 aaPredicted RBP25.04■■□□□ 1.6
MCF2L-221ENST00000469415 JPH4Q96JJ6 628 aa25.03■■□□□ 1.6
MCF2L-221ENST00000469415 IFT140Q96RY7 1462 aa25.02■■□□□ 1.6
MCF2L-221ENST00000469415 KDM6BO15054 1643 aa25.02■■□□□ 1.6
MCF2L-221ENST00000469415 HECW1Q76N89 1606 aa25.01■■□□□ 1.59
MCF2L-221ENST00000469415 MYT1Q01538 1121 aa25■■□□□ 1.59
MCF2L-221ENST00000469415 PLB1Q6P1J6 1458 aa24.99■■□□□ 1.59
MCF2L-221ENST00000469415 SENP3-EIF4A1A0A087X0R7 540 aa24.96■■□□□ 1.59
MCF2L-221ENST00000469415 EIF4G2P78344 907 aaKnown RBP eCLIP24.96■■□□□ 1.59
MCF2L-221ENST00000469415 DISP1Q96F81 1524 aa24.96■■□□□ 1.59
MCF2L-221ENST00000469415 KIAA0586Q9BVV6 1533 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms