RNA–Protein interactions for RNA: ENST00000464764.5

CLCNKA-204, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2

Gene CLCNKA, Length 3,060 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-204ENST00000464764 KIF27Q86VH2 1401 aa17.87■□□□□ 0.45
CLCNKA-204ENST00000464764 ATP1B4Q9UN42 357 aaPredicted RBP17.86■□□□□ 0.45
CLCNKA-204ENST00000464764 CUX1P39880 1505 aa17.86■□□□□ 0.45
CLCNKA-204ENST00000464764 BIVM-ERCC5R4GMW8 1640 aa17.85■□□□□ 0.45
CLCNKA-204ENST00000464764 SETD5Q9C0A6 1442 aa17.85■□□□□ 0.45
CLCNKA-204ENST00000464764 P3H3Q8IVL6 736 aa17.85■□□□□ 0.45
CLCNKA-204ENST00000464764 NEFLP07196 543 aa17.84■□□□□ 0.45
CLCNKA-204ENST00000464764 PHLDB1Q86UU1 1377 aa17.83■□□□□ 0.44
CLCNKA-204ENST00000464764 ANP32CO43423 234 aa17.79■□□□□ 0.44
CLCNKA-204ENST00000464764 IRX6P78412 446 aaPredicted RBP17.77■□□□□ 0.43
CLCNKA-204ENST00000464764 MSH5O43196 834 aa17.75■□□□□ 0.43
CLCNKA-204ENST00000464764 IGF1RP08069 1367 aa17.74■□□□□ 0.43
CLCNKA-204ENST00000464764 CCER2I3L3R5 266 aa17.72■□□□□ 0.43
CLCNKA-204ENST00000464764 LRRC9Q6ZRR7 1453 aa17.72■□□□□ 0.43
CLCNKA-204ENST00000464764 TIAM1Q13009 1591 aa17.72■□□□□ 0.43
CLCNKA-204ENST00000464764 CARMIL1Q5VZK9 1371 aa17.66■□□□□ 0.42
CLCNKA-204ENST00000464764 HNRNPUQ00839 825 aaKnown RBP eCLIP17.65■□□□□ 0.42
CLCNKA-204ENST00000464764 TIMELESSQ9UNS1 1208 aa17.63■□□□□ 0.41
CLCNKA-204ENST00000464764 TONSLQ96HA7 1378 aa17.61■□□□□ 0.41
CLCNKA-204ENST00000464764 CFTRP13569 1480 aa17.6■□□□□ 0.41
CLCNKA-204ENST00000464764 MAP3K1Q13233 1512 aa17.58■□□□□ 0.41
CLCNKA-204ENST00000464764 FHOD3Q2V2M9 1422 aa17.58■□□□□ 0.4
CLCNKA-204ENST00000464764 NCAPD3P42695 1498 aa17.58■□□□□ 0.4
CLCNKA-204ENST00000464764 CCDC184Q52MB2 194 aa17.54■□□□□ 0.4
CLCNKA-204ENST00000464764 CDK11AQ9UQ88 783 aaPredicted RBP17.54■□□□□ 0.4
CLCNKA-204ENST00000464764 FHAD1B1AJZ9 1412 aa17.53■□□□□ 0.4
CLCNKA-204ENST00000464764 PCF11O94913 1555 aaKnown RBP17.53■□□□□ 0.4
CLCNKA-204ENST00000464764 PTPRKQ15262 1439 aa17.51■□□□□ 0.39
CLCNKA-204ENST00000464764 FGD5Q6ZNL6 1462 aa17.49■□□□□ 0.39
CLCNKA-204ENST00000464764 HMGXB3Q12766 1538 aa17.49■□□□□ 0.39
CLCNKA-204ENST00000464764 WASHC2AQ641Q2 1341 aa17.48■□□□□ 0.39
CLCNKA-204ENST00000464764 HSPA5P11021 654 aaKnown RBP17.47■□□□□ 0.39
CLCNKA-204ENST00000464764 ERICH6Q7L0X2 663 aa17.47■□□□□ 0.39
CLCNKA-204ENST00000464764 FANCIQ9NVI1 1328 aa17.47■□□□□ 0.39
CLCNKA-204ENST00000464764 CCDC18Q5T9S5 1454 aa17.47■□□□□ 0.39
CLCNKA-204ENST00000464764 AQRO60306 1485 aaKnown RBP eCLIP17.46■□□□□ 0.39
CLCNKA-204ENST00000464764 B4GALNT3Q6L9W6 998 aa17.45■□□□□ 0.38
CLCNKA-204ENST00000464764 FGD6Q6ZV73 1430 aa17.44■□□□□ 0.38
CLCNKA-204ENST00000464764 FAM9BQ8IZU0 186 aa17.44■□□□□ 0.38
CLCNKA-204ENST00000464764 CHIC2Q9UKJ5 165 aa17.44■□□□□ 0.38
CLCNKA-204ENST00000464764 RRP7BPQ9NSQ0 103 aa17.44■□□□□ 0.38
CLCNKA-204ENST00000464764 CFAP43Q8NDM7 1665 aa17.43■□□□□ 0.38
CLCNKA-204ENST00000464764 UACAQ9BZF9 1416 aa17.41■□□□□ 0.38
CLCNKA-204ENST00000464764 C11orf95C9JLR9 678 aaPredicted RBP17.41■□□□□ 0.38
CLCNKA-204ENST00000464764 MTUS2Q5JR59 1369 aa17.4■□□□□ 0.38
CLCNKA-204ENST00000464764 CASKIN1Q8WXD9 1431 aa17.4■□□□□ 0.38
CLCNKA-204ENST00000464764 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.39■□□□□ 0.37
CLCNKA-204ENST00000464764 PPP4R2Q9NY27 417 aa17.39■□□□□ 0.37
CLCNKA-204ENST00000464764 RAD54L2Q9Y4B4 1467 aa17.39■□□□□ 0.37
CLCNKA-204ENST00000464764 CADPSQ9ULU8 1353 aa17.39■□□□□ 0.37
CLCNKA-204ENST00000464764 CNGB1Q14028 1251 aaPredicted RBP17.38■□□□□ 0.37
CLCNKA-204ENST00000464764 FOXD1Q16676 465 aa17.38■□□□□ 0.37
CLCNKA-204ENST00000464764 HFM1A2PYH4 1435 aa17.38■□□□□ 0.37
CLCNKA-204ENST00000464764 NAIPQ13075 1403 aa17.38■□□□□ 0.37
CLCNKA-204ENST00000464764 KDM5BQ9UGL1 1544 aa17.37■□□□□ 0.37
CLCNKA-204ENST00000464764 FYCO1Q9BQS8 1478 aa17.37■□□□□ 0.37
CLCNKA-204ENST00000464764 SENP3-EIF4A1A0A087X0R7 540 aa17.36■□□□□ 0.37
CLCNKA-204ENST00000464764 EIF4G2P78344 907 aaKnown RBP eCLIP17.34■□□□□ 0.37
CLCNKA-204ENST00000464764 MRS2Q9HD23 443 aa17.34■□□□□ 0.37
CLCNKA-204ENST00000464764 PTPN23Q9H3S7 1636 aa17.33■□□□□ 0.37
CLCNKA-204ENST00000464764 PRKRIP1Q9H875 184 aaPredicted RBP17.32■□□□□ 0.36
CLCNKA-204ENST00000464764 L3MBTL2Q969R5 705 aa17.32■□□□□ 0.36
CLCNKA-204ENST00000464764 NCOA2Q15596 1464 aa17.28■□□□□ 0.36
CLCNKA-204ENST00000464764 NBR1Q14596 966 aa17.28■□□□□ 0.36
CLCNKA-204ENST00000464764 ARID3CA6NKF2 412 aa17.27■□□□□ 0.36
CLCNKA-204ENST00000464764 DEKP35659 375 aaKnown RBP17.27■□□□□ 0.36
CLCNKA-204ENST00000464764 FMN1Q68DA7 1419 aa17.27■□□□□ 0.36
CLCNKA-204ENST00000464764 PAK3O75914 559 aaPredicted RBP17.27■□□□□ 0.36
CLCNKA-204ENST00000464764 DENND4BO75064 1496 aaPredicted RBP17.26■□□□□ 0.35
CLCNKA-204ENST00000464764 SNAPC4Q5SXM2 1469 aa17.26■□□□□ 0.35
CLCNKA-204ENST00000464764 MYOM3Q5VTT5 1437 aa17.26■□□□□ 0.35
CLCNKA-204ENST00000464764 CNTLNQ9NXG0 1405 aa17.26■□□□□ 0.35
CLCNKA-204ENST00000464764 ERICH6BQ5W0A0 696 aa17.26■□□□□ 0.35
CLCNKA-204ENST00000464764 NBPF8Q3BBV2 869 aa17.25■□□□□ 0.35
CLCNKA-204ENST00000464764 MPHOSPH9Q99550 1183 aa17.25■□□□□ 0.35
CLCNKA-204ENST00000464764 CCDC7Q96M83 1385 aa17.23■□□□□ 0.35
CLCNKA-204ENST00000464764 EFCAB5A4FU69 1503 aa17.23■□□□□ 0.35
CLCNKA-204ENST00000464764 FANCD2Q9BXW9 1451 aa17.23■□□□□ 0.35
CLCNKA-204ENST00000464764 ZBED9Q6R2W3 1325 aa17.22■□□□□ 0.35
CLCNKA-204ENST00000464764 POLR3GLQ9BT43 218 aa17.2■□□□□ 0.34
CLCNKA-204ENST00000464764 POLA1P09884 1462 aaPredicted RBP17.2■□□□□ 0.34
CLCNKA-204ENST00000464764 NOP58Q9Y2X3 529 aaKnown RBP17.19■□□□□ 0.34
CLCNKA-204ENST00000464764 KDM6BO15054 1643 aa17.19■□□□□ 0.34
CLCNKA-204ENST00000464764 TDRD9Q8NDG6 1382 aaKnown RBP17.19■□□□□ 0.34
CLCNKA-204ENST00000464764 KIF7Q2M1P5 1343 aa17.18■□□□□ 0.34
CLCNKA-204ENST00000464764 AKNAQ7Z591 1439 aa17.18■□□□□ 0.34
CLCNKA-204ENST00000464764 PRDM2Q13029 1718 aa17.18■□□□□ 0.34
CLCNKA-204ENST00000464764 NCOA1Q15788 1441 aa17.18■□□□□ 0.34
CLCNKA-204ENST00000464764 ABCA10Q8WWZ4 1543 aa17.17■□□□□ 0.34
CLCNKA-204ENST00000464764 LRRIQ1Q96JM4 1722 aa17.16■□□□□ 0.34
CLCNKA-204ENST00000464764 MAGI3Q5TCQ9 1506 aa17.14■□□□□ 0.33
CLCNKA-204ENST00000464764 GRIN2BQ13224 1484 aa17.13■□□□□ 0.33
CLCNKA-204ENST00000464764 TOPBP1Q92547 1522 aa17.13■□□□□ 0.33
CLCNKA-204ENST00000464764 NESP48681 1621 aa17.12■□□□□ 0.33
CLCNKA-204ENST00000464764 CCDC136Q96JN2 1154 aa17.12■□□□□ 0.33
CLCNKA-204ENST00000464764 ZNF326Q5BKZ1 582 aaKnown RBP17.1■□□□□ 0.33
CLCNKA-204ENST00000464764 CTTNBP2Q8WZ74 1663 aa17.1■□□□□ 0.33
CLCNKA-204ENST00000464764 UGGT2Q9NYU1 1516 aa17.09■□□□□ 0.33
CLCNKA-204ENST00000464764 SUPT6HQ7KZ85 1726 aaKnown RBP17.08■□□□□ 0.33
CLCNKA-204ENST00000464764 DNMBPQ6XZF7 1577 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms