RNA–Protein interactions for RNA: ENST00000464764.5

CLCNKA-204, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2

Gene CLCNKA, Length 3,060 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-204ENST00000464764 NISCHQ9Y2I1 1504 aa24.59■■□□□ 1.53
CLCNKA-204ENST00000464764 SHROOM4Q9ULL8 1493 aa21.8■■□□□ 1.08
CLCNKA-204ENST00000464764 SUPT5HO00267 1087 aaKnown RBP21.6■■□□□ 1.05
CLCNKA-204ENST00000464764 HRCP23327 699 aa21.16■□□□□ 0.98
CLCNKA-204ENST00000464764 MYO15BQ96JP2 1530 aa21.1■□□□□ 0.97
CLCNKA-204ENST00000464764 CHIC1Q5VXU3 224 aa21.05■□□□□ 0.96
CLCNKA-204ENST00000464764 PCGF6Q9BYE7 350 aa21.02■□□□□ 0.96
CLCNKA-204ENST00000464764 PPARGC1BQ86YN6 1023 aaKnown RBP20.93■□□□□ 0.94
CLCNKA-204ENST00000464764 ZCCHC6Q5VYS8 1495 aaKnown RBP20.84■□□□□ 0.93
CLCNKA-204ENST00000464764 DCAF8L2P0C7V8 631 aa20.84■□□□□ 0.93
CLCNKA-204ENST00000464764 LOC105371045A0A1W2PR82 267 aa20.66■□□□□ 0.9
CLCNKA-204ENST00000464764 CCDC180Q9P1Z9 1646 aa20.39■□□□□ 0.85
CLCNKA-204ENST00000464764 DCAF1Q9Y4B6 1507 aa20.37■□□□□ 0.85
CLCNKA-204ENST00000464764 TRIM26Q12899 539 aaPredicted RBP20.29■□□□□ 0.84
CLCNKA-204ENST00000464764 EHMT2Q96KQ7 1210 aa20.03■□□□□ 0.8
CLCNKA-204ENST00000464764 FAM9AQ8IZU1 332 aaPredicted RBP20.02■□□□□ 0.8
CLCNKA-204ENST00000464764 TRIM41Q8WV44 630 aa19.92■□□□□ 0.78
CLCNKA-204ENST00000464764 SCAF1Q9H7N4 1312 aaKnown RBP19.91■□□□□ 0.78
CLCNKA-204ENST00000464764 ZEB1P37275 1124 aaPredicted RBP19.9■□□□□ 0.78
CLCNKA-204ENST00000464764 RSF1Q96T23 1441 aaPredicted RBP19.76■□□□□ 0.75
CLCNKA-204ENST00000464764 ABCC9O60706 1549 aa19.71■□□□□ 0.75
CLCNKA-204ENST00000464764 PELP1Q8IZL8 1130 aaKnown RBP19.7■□□□□ 0.74
CLCNKA-204ENST00000464764 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.61■□□□□ 0.73
CLCNKA-204ENST00000464764 RB1CC1Q8TDY2 1594 aa19.61■□□□□ 0.73
CLCNKA-204ENST00000464764 SCRIBQ14160 1630 aa19.59■□□□□ 0.73
CLCNKA-204ENST00000464764 NEUROD1Q13562 356 aa19.5■□□□□ 0.71
CLCNKA-204ENST00000464764 CCER1Q8TC90 406 aaPredicted RBP19.49■□□□□ 0.71
CLCNKA-204ENST00000464764 ACIN1Q9UKV3 1341 aaKnown RBP19.45■□□□□ 0.7
CLCNKA-204ENST00000464764 TTBK1Q5TCY1 1321 aaPredicted RBP19.45■□□□□ 0.7
CLCNKA-204ENST00000464764 CECR2Q9BXF3 1484 aa19.37■□□□□ 0.69
CLCNKA-204ENST00000464764 GTF3C3Q9Y5Q9 886 aa19.35■□□□□ 0.69
CLCNKA-204ENST00000464764 DIEXFQ68CQ4 756 aaKnown RBP19.34■□□□□ 0.69
CLCNKA-204ENST00000464764 MROH2BQ7Z745 1585 aa19.26■□□□□ 0.67
CLCNKA-204ENST00000464764 CENPBP07199 599 aaPredicted RBP19.18■□□□□ 0.66
CLCNKA-204ENST00000464764 WIZO95785 1651 aa19.16■□□□□ 0.66
CLCNKA-204ENST00000464764 YTHDC1Q96MU7 727 aaKnown RBP19.11■□□□□ 0.65
CLCNKA-204ENST00000464764 CCDC88BA6NC98 1476 aa19.02■□□□□ 0.63
CLCNKA-204ENST00000464764 ZNF316A6NFI3 1004 aaPredicted RBP19.01■□□□□ 0.63
CLCNKA-204ENST00000464764 ABCC8Q09428 1581 aa19■□□□□ 0.63
CLCNKA-204ENST00000464764 CEP162Q5TB80 1403 aa18.99■□□□□ 0.63
CLCNKA-204ENST00000464764 SOGA1O94964 1423 aa18.97■□□□□ 0.63
CLCNKA-204ENST00000464764 UBTFP17480 764 aaKnown RBP18.97■□□□□ 0.63
CLCNKA-204ENST00000464764 WRNQ14191 1432 aaPredicted RBP eCLIP18.94■□□□□ 0.62
CLCNKA-204ENST00000464764 MIER1Q8N108 512 aa18.93■□□□□ 0.62
CLCNKA-204ENST00000464764 EIF4G1Q04637 1599 aaKnown RBP18.92■□□□□ 0.62
CLCNKA-204ENST00000464764 HNRNPUL2Q1KMD3 747 aaKnown RBP18.91■□□□□ 0.62
CLCNKA-204ENST00000464764 BAZ1AQ9NRL2 1556 aaPredicted RBP18.89■□□□□ 0.61
CLCNKA-204ENST00000464764 RUSC2Q8N2Y8 1516 aa18.89■□□□□ 0.61
CLCNKA-204ENST00000464764 NACADO15069 1562 aa18.87■□□□□ 0.61
CLCNKA-204ENST00000464764 CSRNP3Q8WYN3 585 aa18.87■□□□□ 0.61
CLCNKA-204ENST00000464764 TNIKQ9UKE5 1360 aa18.85■□□□□ 0.61
CLCNKA-204ENST00000464764 MYT1Q01538 1121 aa18.74■□□□□ 0.59
CLCNKA-204ENST00000464764 RANGAP1P46060 587 aaPredicted RBP18.72■□□□□ 0.59
CLCNKA-204ENST00000464764 TOP2AP11388 1531 aaKnown RBP18.7■□□□□ 0.58
CLCNKA-204ENST00000464764 SMARCA2P51531 1590 aa18.69■□□□□ 0.58
CLCNKA-204ENST00000464764 GOLGA3Q08378 1498 aa18.63■□□□□ 0.57
CLCNKA-204ENST00000464764 EEA1Q15075 1411 aa18.6■□□□□ 0.57
CLCNKA-204ENST00000464764 SMARCA4P51532 1647 aa18.59■□□□□ 0.57
CLCNKA-204ENST00000464764 CLIP1P30622 1438 aa18.54■□□□□ 0.56
CLCNKA-204ENST00000464764 APLP2Q06481 763 aa18.54■□□□□ 0.56
CLCNKA-204ENST00000464764 PABPN1Q86U42 306 aaKnown RBP eCLIP18.5■□□□□ 0.55
CLCNKA-204ENST00000464764 SUPT16HQ9Y5B9 1047 aaKnown RBP18.46■□□□□ 0.54
CLCNKA-204ENST00000464764 CEP164Q9UPV0 1460 aa18.45■□□□□ 0.54
CLCNKA-204ENST00000464764 VPS8Q8N3P4 1428 aa18.45■□□□□ 0.54
CLCNKA-204ENST00000464764 RAPGEF2Q9Y4G8 1499 aa18.42■□□□□ 0.54
CLCNKA-204ENST00000464764 SYNJ1O43426 1573 aa18.4■□□□□ 0.54
CLCNKA-204ENST00000464764 DHX57Q6P158 1386 aaKnown RBP18.37■□□□□ 0.53
CLCNKA-204ENST00000464764 KANK4Q5T7N3 995 aaPredicted RBP18.36■□□□□ 0.53
CLCNKA-204ENST00000464764 KCNH8Q96L42 1107 aa18.34■□□□□ 0.53
CLCNKA-204ENST00000464764 KIF21BO75037 1637 aa18.33■□□□□ 0.52
CLCNKA-204ENST00000464764 TSHZ2Q9NRE2 1034 aa18.3■□□□□ 0.52
CLCNKA-204ENST00000464764 ITGAEP38570 1179 aa18.29■□□□□ 0.52
CLCNKA-204ENST00000464764 UNC13AQ9UPW8 1703 aa18.27■□□□□ 0.52
CLCNKA-204ENST00000464764 BCANQ96GW7 911 aa18.24■□□□□ 0.51
CLCNKA-204ENST00000464764 CLSPNQ9HAW4 1339 aa18.23■□□□□ 0.51
CLCNKA-204ENST00000464764 BAZ1BQ9UIG0 1483 aaKnown RBP18.23■□□□□ 0.51
CLCNKA-204ENST00000464764 ARAP1Q96P48 1450 aa18.15■□□□□ 0.5
CLCNKA-204ENST00000464764 ANP32EQ9BTT0 268 aa18.11■□□□□ 0.49
CLCNKA-204ENST00000464764 BICRAQ9NZM4 1560 aa18.1■□□□□ 0.49
CLCNKA-204ENST00000464764 ATAD2BQ9ULI0 1458 aa18.09■□□□□ 0.49
CLCNKA-204ENST00000464764 DDX10Q13206 875 aaKnown RBP18.09■□□□□ 0.49
CLCNKA-204ENST00000464764 FKBP8Q14318 412 aa18.08■□□□□ 0.49
CLCNKA-204ENST00000464764 HIRIP3Q9BW71 556 aaPredicted RBP18.07■□□□□ 0.48
CLCNKA-204ENST00000464764 PEG3Q9GZU2 1588 aa18.07■□□□□ 0.48
CLCNKA-204ENST00000464764 RRBP1Q9P2E9 1410 aaKnown RBP18.06■□□□□ 0.48
CLCNKA-204ENST00000464764 CCNB3Q8WWL7 1395 aa18.06■□□□□ 0.48
CLCNKA-204ENST00000464764 PRXQ9BXM0 1461 aa18.05■□□□□ 0.48
CLCNKA-204ENST00000464764 SIN3AQ96ST3 1273 aa18.04■□□□□ 0.48
CLCNKA-204ENST00000464764 RAB3GAP2Q9H2M9 1393 aa18.02■□□□□ 0.48
CLCNKA-204ENST00000464764 TOP2BQ02880 1626 aa18■□□□□ 0.47
CLCNKA-204ENST00000464764 TRIM52Q96A61 297 aa17.97■□□□□ 0.47
CLCNKA-204ENST00000464764 CUX2O14529 1486 aa17.95■□□□□ 0.46
CLCNKA-204ENST00000464764 MAPKBP1O60336 1514 aa17.94■□□□□ 0.46
CLCNKA-204ENST00000464764 ERICH3Q5RHP9 1530 aa17.94■□□□□ 0.46
CLCNKA-204ENST00000464764 ARHGAP35Q9NRY4 1499 aa17.93■□□□□ 0.46
CLCNKA-204ENST00000464764 FAM50AQ14320 339 aaKnown RBP17.92■□□□□ 0.46
CLCNKA-204ENST00000464764 RBM19Q9Y4C8 960 aaKnown RBP17.9■□□□□ 0.46
CLCNKA-204ENST00000464764 WDR97A6NE52 1622 aa17.9■□□□□ 0.46
CLCNKA-204ENST00000464764 PPP1R15AO75807 674 aaPredicted RBP17.9■□□□□ 0.46
CLCNKA-204ENST00000464764 BCL11AQ9H165 835 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms