RNA–Protein interactions for RNA: ENST00000448935.6

VIPAS39-203, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,623 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-203ENST00000448935 TARBP1Q13395 1621 aaKnown RBP16.48■□□□□ 0.23
VIPAS39-203ENST00000448935 WDR62O43379 1518 aa16.47■□□□□ 0.23
VIPAS39-203ENST00000448935 VPS8Q8N3P4 1428 aa16.46■□□□□ 0.22
VIPAS39-203ENST00000448935 ERCC6Q03468 1493 aa16.45■□□□□ 0.22
VIPAS39-203ENST00000448935 GAPVD1Q14C86 1478 aa16.45■□□□□ 0.22
VIPAS39-203ENST00000448935 IFT140Q96RY7 1462 aa16.41■□□□□ 0.22
VIPAS39-203ENST00000448935 TDRD9Q8NDG6 1382 aaKnown RBP16.4■□□□□ 0.22
VIPAS39-203ENST00000448935 MSH5O43196 834 aa16.38■□□□□ 0.21
VIPAS39-203ENST00000448935 PBRM1Q86U86 1689 aa16.38■□□□□ 0.21
VIPAS39-203ENST00000448935 THOC2Q8NI27 1593 aaKnown RBP16.37■□□□□ 0.21
VIPAS39-203ENST00000448935 CTTNBP2Q8WZ74 1663 aa16.36■□□□□ 0.21
VIPAS39-203ENST00000448935 ARAP1Q96P48 1450 aa16.35■□□□□ 0.21
VIPAS39-203ENST00000448935 APLP2Q06481 763 aa16.35■□□□□ 0.21
VIPAS39-203ENST00000448935 RANGAP1P46060 587 aaPredicted RBP16.34■□□□□ 0.21
VIPAS39-203ENST00000448935 ARHGAP35Q9NRY4 1499 aa16.33■□□□□ 0.2
VIPAS39-203ENST00000448935 GRIN2BQ13224 1484 aa16.31■□□□□ 0.2
VIPAS39-203ENST00000448935 MAPK8IP2Q13387 824 aaPredicted RBP16.3■□□□□ 0.2
VIPAS39-203ENST00000448935 PPARGC1BQ86YN6 1023 aaKnown RBP16.3■□□□□ 0.2
VIPAS39-203ENST00000448935 EFCAB5A4FU69 1503 aa16.29■□□□□ 0.2
VIPAS39-203ENST00000448935 RNF216Q9NWF9 866 aaPredicted RBP16.29■□□□□ 0.2
VIPAS39-203ENST00000448935 FHAD1B1AJZ9 1412 aa16.29■□□□□ 0.2
VIPAS39-203ENST00000448935 ADAMTS12P58397 1594 aa16.27■□□□□ 0.19
VIPAS39-203ENST00000448935 AQRO60306 1485 aaKnown RBP eCLIP16.26■□□□□ 0.192e-6■■■■■ 28.9
VIPAS39-203ENST00000448935 SLC24A1O60721 1099 aa16.24■□□□□ 0.19
VIPAS39-203ENST00000448935 HRCP23327 699 aa16.24■□□□□ 0.19
VIPAS39-203ENST00000448935 EIF4G3O43432 1585 aaKnown RBP16.23■□□□□ 0.19
VIPAS39-203ENST00000448935 ZNF608Q9ULD9 1512 aaPredicted RBP16.22■□□□□ 0.19
VIPAS39-203ENST00000448935 MAP3K1Q13233 1512 aa16.19■□□□□ 0.18
VIPAS39-203ENST00000448935 AMER1Q5JTC6 1135 aaPredicted RBP16.18■□□□□ 0.18
VIPAS39-203ENST00000448935 RTN4Q9NQC3 1192 aaKnown RBP16.18■□□□□ 0.18
VIPAS39-203ENST00000448935 MAGI1Q96QZ7 1491 aaPredicted RBP16.17■□□□□ 0.18
VIPAS39-203ENST00000448935 SAMD9Q5K651 1589 aa16.16■□□□□ 0.18
VIPAS39-203ENST00000448935 TTBK1Q5TCY1 1321 aaPredicted RBP16.15■□□□□ 0.18
VIPAS39-203ENST00000448935 SNAPC4Q5SXM2 1469 aa16.15■□□□□ 0.18
VIPAS39-203ENST00000448935 IQGAP2Q13576 1575 aa16.14■□□□□ 0.17
VIPAS39-203ENST00000448935 FMN1Q68DA7 1419 aa16.14■□□□□ 0.17
VIPAS39-203ENST00000448935 FYCO1Q9BQS8 1478 aa16.12■□□□□ 0.17
VIPAS39-203ENST00000448935 TIAM1Q13009 1591 aa16.11■□□□□ 0.17
VIPAS39-203ENST00000448935 FHOD3Q2V2M9 1422 aa16.11■□□□□ 0.17
VIPAS39-203ENST00000448935 PCF11O94913 1555 aaKnown RBP16.1■□□□□ 0.17
VIPAS39-203ENST00000448935 GRIN2AQ12879 1464 aa16.1■□□□□ 0.17
VIPAS39-203ENST00000448935 ZEB1P37275 1124 aaPredicted RBP16.09■□□□□ 0.17
VIPAS39-203ENST00000448935 CASKIN1Q8WXD9 1431 aa16.09■□□□□ 0.17
VIPAS39-203ENST00000448935 CFAP43Q8NDM7 1665 aa16.09■□□□□ 0.17
VIPAS39-203ENST00000448935 SYNJ2O15056 1496 aa16.09■□□□□ 0.17
VIPAS39-203ENST00000448935 P3H3Q8IVL6 736 aa16.08■□□□□ 0.16
VIPAS39-203ENST00000448935 KIAA0586Q9BVV6 1533 aa16.07■□□□□ 0.16
VIPAS39-203ENST00000448935 UGGT2Q9NYU1 1516 aa16.06■□□□□ 0.16
VIPAS39-203ENST00000448935 KANK4Q5T7N3 995 aaPredicted RBP16.03■□□□□ 0.16
VIPAS39-203ENST00000448935 CHMP7Q8WUX9 453 aaPredicted RBP16.03■□□□□ 0.16
VIPAS39-203ENST00000448935 LRRC9Q6ZRR7 1453 aa16.02■□□□□ 0.16
VIPAS39-203ENST00000448935 RRBP1Q9P2E9 1410 aaKnown RBP15.99■□□□□ 0.15
VIPAS39-203ENST00000448935 NUP160Q12769 1436 aa15.97■□□□□ 0.15
VIPAS39-203ENST00000448935 CEP170Q5SW79 1584 aa15.97■□□□□ 0.15
VIPAS39-203ENST00000448935 ATP1B4Q9UN42 357 aaPredicted RBP15.97■□□□□ 0.15
VIPAS39-203ENST00000448935 KIAA0556O60303 1618 aa15.96■□□□□ 0.15
VIPAS39-203ENST00000448935 HOXD11P31277 338 aaPredicted RBP15.96■□□□□ 0.15
VIPAS39-203ENST00000448935 HECW1Q76N89 1606 aa15.96■□□□□ 0.14
VIPAS39-203ENST00000448935 CCDC18Q5T9S5 1454 aa15.95■□□□□ 0.14
VIPAS39-203ENST00000448935 SLC4A2P04920 1241 aa15.94■□□□□ 0.14
VIPAS39-203ENST00000448935 FBLN2P98095 1184 aa15.93■□□□□ 0.14
VIPAS39-203ENST00000448935 DISP1Q96F81 1524 aa15.92■□□□□ 0.14
VIPAS39-203ENST00000448935 CCNB3Q8WWL7 1395 aa15.92■□□□□ 0.14
VIPAS39-203ENST00000448935 LRRIQ1Q96JM4 1722 aa15.9■□□□□ 0.14
VIPAS39-203ENST00000448935 CARMIL2Q6F5E8 1435 aa15.9■□□□□ 0.14
VIPAS39-203ENST00000448935 CCER1Q8TC90 406 aaPredicted RBP15.9■□□□□ 0.14
VIPAS39-203ENST00000448935 DMRT2Q9Y5R5 561 aa15.9■□□□□ 0.14
VIPAS39-203ENST00000448935 HNRNPUL2Q1KMD3 747 aaKnown RBP15.89■□□□□ 0.13
VIPAS39-203ENST00000448935 MTUS2Q5JR59 1369 aa15.88■□□□□ 0.13
VIPAS39-203ENST00000448935 EHBP1L1Q8N3D4 1523 aa15.88■□□□□ 0.13
VIPAS39-203ENST00000448935 ATXN8OSP0DMR3 200 aa15.88■□□□□ 0.13
VIPAS39-203ENST00000448935 CHD1O14646 1710 aa15.86■□□□□ 0.13
VIPAS39-203ENST00000448935 SUPT6HQ7KZ85 1726 aaKnown RBP15.86■□□□□ 0.13
VIPAS39-203ENST00000448935 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.86■□□□□ 0.13
VIPAS39-203ENST00000448935 RAPGEF6Q8TEU7 1601 aa15.85■□□□□ 0.13
VIPAS39-203ENST00000448935 EPRSP07814 1512 aaKnown RBP15.84■□□□□ 0.13
VIPAS39-203ENST00000448935 JPH4Q96JJ6 628 aa15.84■□□□□ 0.13
VIPAS39-203ENST00000448935 MYCNP04198 464 aaPredicted RBP15.83■□□□□ 0.13
VIPAS39-203ENST00000448935 FKBP8Q14318 412 aa15.83■□□□□ 0.13
VIPAS39-203ENST00000448935 PHLDB1Q86UU1 1377 aa15.83■□□□□ 0.12
VIPAS39-203ENST00000448935 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.83■□□□□ 0.12
VIPAS39-203ENST00000448935 NCOA2Q15596 1464 aa15.78■□□□□ 0.12
VIPAS39-203ENST00000448935 ARHGEF11O15085 1522 aa15.76■□□□□ 0.11
VIPAS39-203ENST00000448935 CDK11AQ9UQ88 783 aaPredicted RBP15.76■□□□□ 0.11
VIPAS39-203ENST00000448935 FGD6Q6ZV73 1430 aa15.76■□□□□ 0.11
VIPAS39-203ENST00000448935 NUP153P49790 1475 aaKnown RBP15.76■□□□□ 0.11
VIPAS39-203ENST00000448935 MYOM3Q5VTT5 1437 aa15.75■□□□□ 0.11
VIPAS39-203ENST00000448935 CDK13Q14004 1512 aaKnown RBP15.75■□□□□ 0.11
VIPAS39-203ENST00000448935 SHROOM2Q13796 1616 aa15.75■□□□□ 0.11
VIPAS39-203ENST00000448935 MAGI3Q5TCQ9 1506 aa15.74■□□□□ 0.11
VIPAS39-203ENST00000448935 FAM50AQ14320 339 aaKnown RBP15.73■□□□□ 0.11
VIPAS39-203ENST00000448935 PRG4Q92954 1404 aaPredicted RBP15.73■□□□□ 0.11
VIPAS39-203ENST00000448935 ABCA8O94911 1581 aa15.71■□□□□ 0.11
VIPAS39-203ENST00000448935 CLSPNQ9HAW4 1339 aa15.7■□□□□ 0.1
VIPAS39-203ENST00000448935 PLB1Q6P1J6 1458 aa15.7■□□□□ 0.1
VIPAS39-203ENST00000448935 PTPN23Q9H3S7 1636 aa15.69■□□□□ 0.1
VIPAS39-203ENST00000448935 ITGAEP38570 1179 aa15.68■□□□□ 0.1
VIPAS39-203ENST00000448935 MIA2Q96PC5 1412 aa15.68■□□□□ 0.1
VIPAS39-203ENST00000448935 PTPRGP23470 1445 aa15.67■□□□□ 0.1
VIPAS39-203ENST00000448935 CLASP1Q7Z460 1538 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms