RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 CHIC2Q9UKJ5 165 aa22.7■■□□□ 1.22
SCARF1-203ENST00000434376 CCNB3Q8WWL7 1395 aa22.66■■□□□ 1.22
SCARF1-203ENST00000434376 BIVM-ERCC5R4GMW8 1640 aa22.66■■□□□ 1.22
SCARF1-203ENST00000434376 DHX57Q6P158 1386 aaKnown RBP22.58■■□□□ 1.21
SCARF1-203ENST00000434376 MYT1Q01538 1121 aa22.58■■□□□ 1.2
SCARF1-203ENST00000434376 POLA1P09884 1462 aaPredicted RBP22.57■■□□□ 1.2
SCARF1-203ENST00000434376 PHLDB1Q86UU1 1377 aa22.55■■□□□ 1.2
SCARF1-203ENST00000434376 CNGB1Q14028 1251 aaPredicted RBP22.54■■□□□ 1.2
SCARF1-203ENST00000434376 ERICH3Q5RHP9 1530 aa22.54■■□□□ 1.2
SCARF1-203ENST00000434376 RRP7BPQ9NSQ0 103 aa22.53■■□□□ 1.2
SCARF1-203ENST00000434376 RAB3GAP2Q9H2M9 1393 aa22.53■■□□□ 1.2
SCARF1-203ENST00000434376 TOPBP1Q92547 1522 aa22.52■■□□□ 1.2
SCARF1-203ENST00000434376 MTUS2Q5JR59 1369 aa22.51■■□□□ 1.19
SCARF1-203ENST00000434376 TRIM52Q96A61 297 aa22.49■■□□□ 1.19
SCARF1-203ENST00000434376 AQRO60306 1485 aaKnown RBP eCLIP22.46■■□□□ 1.19
SCARF1-203ENST00000434376 DDX10Q13206 875 aaKnown RBP22.46■■□□□ 1.19
SCARF1-203ENST00000434376 KCNH8Q96L42 1107 aa22.43■■□□□ 1.18
SCARF1-203ENST00000434376 URB2Q14146 1524 aaKnown RBP22.41■■□□□ 1.18
SCARF1-203ENST00000434376 ZNF777Q9ULD5 760 aaPredicted RBP22.41■■□□□ 1.18
SCARF1-203ENST00000434376 FOXD1Q16676 465 aa22.38■■□□□ 1.17
SCARF1-203ENST00000434376 PDS5BQ9NTI5 1447 aa22.37■■□□□ 1.17
SCARF1-203ENST00000434376 GAPVD1Q14C86 1478 aa22.34■■□□□ 1.17
SCARF1-203ENST00000434376 FHAD1B1AJZ9 1412 aa22.33■■□□□ 1.16
SCARF1-203ENST00000434376 LRRC9Q6ZRR7 1453 aa22.32■■□□□ 1.16
SCARF1-203ENST00000434376 RRBP1Q9P2E9 1410 aaKnown RBP22.3■■□□□ 1.16
SCARF1-203ENST00000434376 CHMP7Q8WUX9 453 aaPredicted RBP22.29■■□□□ 1.16
SCARF1-203ENST00000434376 DNMBPQ6XZF7 1577 aa22.29■■□□□ 1.16
SCARF1-203ENST00000434376 SETD5Q9C0A6 1442 aa22.28■■□□□ 1.16
SCARF1-203ENST00000434376 POLR3GLQ9BT43 218 aa22.26■■□□□ 1.15
SCARF1-203ENST00000434376 PCF11O94913 1555 aaKnown RBP22.25■■□□□ 1.15
SCARF1-203ENST00000434376 ABCA10Q8WWZ4 1543 aa22.25■■□□□ 1.15
SCARF1-203ENST00000434376 TIAM1Q13009 1591 aa22.23■■□□□ 1.15
SCARF1-203ENST00000434376 ZNF326Q5BKZ1 582 aaKnown RBP22.23■■□□□ 1.15
SCARF1-203ENST00000434376 BCANQ96GW7 911 aa22.22■■□□□ 1.15
SCARF1-203ENST00000434376 ZNF644Q9H582 1327 aaPredicted RBP22.21■■□□□ 1.15
SCARF1-203ENST00000434376 ERCC6Q03468 1493 aa22.19■■□□□ 1.14
SCARF1-203ENST00000434376 ZNF608Q9ULD9 1512 aaPredicted RBP22.17■■□□□ 1.14
SCARF1-203ENST00000434376 SENP3-EIF4A1A0A087X0R7 540 aa22.16■■□□□ 1.14
SCARF1-203ENST00000434376 TONSLQ96HA7 1378 aa22.15■■□□□ 1.14
SCARF1-203ENST00000434376 FMN1Q68DA7 1419 aa22.13■■□□□ 1.13
SCARF1-203ENST00000434376 CLSPNQ9HAW4 1339 aa22.09■■□□□ 1.13
SCARF1-203ENST00000434376 CASKIN1Q8WXD9 1431 aa22.08■■□□□ 1.13
SCARF1-203ENST00000434376 KIF21AQ7Z4S6 1674 aa22.07■■□□□ 1.12
SCARF1-203ENST00000434376 PTPRKQ15262 1439 aa22.06■■□□□ 1.12
SCARF1-203ENST00000434376 FGD6Q6ZV73 1430 aa22.06■■□□□ 1.12
SCARF1-203ENST00000434376 LAMC3Q9Y6N6 1575 aa22.05■■□□□ 1.12
SCARF1-203ENST00000434376 PRDM2Q13029 1718 aa22.03■■□□□ 1.12
SCARF1-203ENST00000434376 CDK13Q14004 1512 aaKnown RBP22.03■■□□□ 1.12
SCARF1-203ENST00000434376 PPP1R15AO75807 674 aaPredicted RBP22.02■■□□□ 1.12
SCARF1-203ENST00000434376 NCOA2Q15596 1464 aa22.01■■□□□ 1.11
SCARF1-203ENST00000434376 FYCO1Q9BQS8 1478 aa21.98■■□□□ 1.11
SCARF1-203ENST00000434376 SUPT16HQ9Y5B9 1047 aaKnown RBP21.98■■□□□ 1.11
SCARF1-203ENST00000434376 MAPKBP1O60336 1514 aa21.97■■□□□ 1.11
SCARF1-203ENST00000434376 WDR97A6NE52 1622 aa21.97■■□□□ 1.11
SCARF1-203ENST00000434376 CFDP1Q9UEE9 299 aaPredicted RBP21.97■■□□□ 1.11
SCARF1-203ENST00000434376 SLC4A1APQ9BWU0 796 aaKnown RBP21.97■■□□□ 1.11
SCARF1-203ENST00000434376 CCDC18Q5T9S5 1454 aa21.94■■□□□ 1.1
SCARF1-203ENST00000434376 JPH4Q96JJ6 628 aa21.94■■□□□ 1.1
SCARF1-203ENST00000434376 ANP32CO43423 234 aa21.93■■□□□ 1.1
SCARF1-203ENST00000434376 CDK11AQ9UQ88 783 aaPredicted RBP21.91■■□□□ 1.1
SCARF1-203ENST00000434376 MYOM3Q5VTT5 1437 aa21.9■■□□□ 1.1
SCARF1-203ENST00000434376 MPHOSPH9Q99550 1183 aa21.9■■□□□ 1.1
SCARF1-203ENST00000434376 KDM2AQ9Y2K7 1162 aa21.9■■□□□ 1.1
SCARF1-203ENST00000434376 MRC2Q9UBG0 1479 aa21.9■■□□□ 1.1
SCARF1-203ENST00000434376 SNAPC4Q5SXM2 1469 aa21.89■■□□□ 1.1
SCARF1-203ENST00000434376 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.88■■□□□ 1.09
SCARF1-203ENST00000434376 L3MBTL2Q969R5 705 aa21.87■■□□□ 1.09
SCARF1-203ENST00000434376 CUL7Q14999 1698 aa21.86■■□□□ 1.09
SCARF1-203ENST00000434376 GRIN2BQ13224 1484 aa21.86■■□□□ 1.09
SCARF1-203ENST00000434376 IRX6P78412 446 aaPredicted RBP21.85■■□□□ 1.09
SCARF1-203ENST00000434376 EFCAB5A4FU69 1503 aa21.85■■□□□ 1.09
SCARF1-203ENST00000434376 PRG4Q92954 1404 aaPredicted RBP21.83■■□□□ 1.09
SCARF1-203ENST00000434376 HSPA5P11021 654 aaKnown RBP21.83■■□□□ 1.09
SCARF1-203ENST00000434376 MAGI3Q5TCQ9 1506 aa21.82■■□□□ 1.08
SCARF1-203ENST00000434376 NAIPQ13075 1403 aa21.82■■□□□ 1.08
SCARF1-203ENST00000434376 PLEKHD1A6NEE1 506 aa21.82■■□□□ 1.08
SCARF1-203ENST00000434376 MYT1LQ9UL68 1186 aa21.81■■□□□ 1.08
SCARF1-203ENST00000434376 HNRNPMP52272 730 aaKnown RBP eCLIP21.81■■□□□ 1.08
SCARF1-203ENST00000434376 FKBP8Q14318 412 aa21.8■■□□□ 1.08
SCARF1-203ENST00000434376 CTTNBP2Q8WZ74 1663 aa21.8■■□□□ 1.08
SCARF1-203ENST00000434376 ABCA5Q8WWZ7 1642 aa21.8■■□□□ 1.08
SCARF1-203ENST00000434376 TSHZ2Q9NRE2 1034 aa21.79■■□□□ 1.08
SCARF1-203ENST00000434376 PLB1Q6P1J6 1458 aa21.79■■□□□ 1.08
SCARF1-203ENST00000434376 EPRSP07814 1512 aaKnown RBP21.78■■□□□ 1.08
SCARF1-203ENST00000434376 FAM9BQ8IZU0 186 aa21.78■■□□□ 1.08
SCARF1-203ENST00000434376 MAP3K1Q13233 1512 aa21.77■■□□□ 1.07
SCARF1-203ENST00000434376 THOC2Q8NI27 1593 aaKnown RBP21.76■■□□□ 1.07
SCARF1-203ENST00000434376 HNRNPUQ00839 825 aaKnown RBP eCLIP21.76■■□□□ 1.07
SCARF1-203ENST00000434376 RGL3Q3MIN7 710 aa21.76■■□□□ 1.07
SCARF1-203ENST00000434376 TARBP1Q13395 1621 aaKnown RBP21.75■■□□□ 1.07
SCARF1-203ENST00000434376 IQGAP2Q13576 1575 aa21.75■■□□□ 1.07
SCARF1-203ENST00000434376 CFAP43Q8NDM7 1665 aa21.72■■□□□ 1.07
SCARF1-203ENST00000434376 PKD2Q13563 968 aa21.72■■□□□ 1.07
SCARF1-203ENST00000434376 HFM1A2PYH4 1435 aa21.71■■□□□ 1.07
SCARF1-203ENST00000434376 EIF4G2P78344 907 aaKnown RBP eCLIP21.71■■□□□ 1.07
SCARF1-203ENST00000434376 UACAQ9BZF9 1416 aa21.71■■□□□ 1.07
SCARF1-203ENST00000434376 ANP32EQ9BTT0 268 aa21.69■■□□□ 1.06
SCARF1-203ENST00000434376 SENP3Q9H4L4 574 aaPredicted RBP21.69■■□□□ 1.06
SCARF1-203ENST00000434376 NBPF8Q3BBV2 869 aa21.69■■□□□ 1.06
SCARF1-203ENST00000434376 IFT140Q96RY7 1462 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms