RNA–Protein interactions for RNA: ENST00000429456.1

LINC01238-203, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2 BASIC

Gene LINC01238, Length 2,170 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-203ENST00000429456 FHAD1B1AJZ9 1412 aa16.75■□□□□ 0.27
LINC01238-203ENST00000429456 CFAP43Q8NDM7 1665 aa16.75■□□□□ 0.27
LINC01238-203ENST00000429456 ITGAEP38570 1179 aa16.73■□□□□ 0.27
LINC01238-203ENST00000429456 DNMBPQ6XZF7 1577 aa16.72■□□□□ 0.27
LINC01238-203ENST00000429456 MAPKBP1O60336 1514 aa16.72■□□□□ 0.27
LINC01238-203ENST00000429456 PHLDB1Q86UU1 1377 aa16.71■□□□□ 0.27
LINC01238-203ENST00000429456 PCF11O94913 1555 aaKnown RBP16.71■□□□□ 0.27
LINC01238-203ENST00000429456 ABCA10Q8WWZ4 1543 aa16.7■□□□□ 0.26
LINC01238-203ENST00000429456 SETD5Q9C0A6 1442 aa16.7■□□□□ 0.26
LINC01238-203ENST00000429456 RAD54L2Q9Y4B4 1467 aa16.67■□□□□ 0.26
LINC01238-203ENST00000429456 TOPBP1Q92547 1522 aa16.67■□□□□ 0.26
LINC01238-203ENST00000429456 POLA1P09884 1462 aaPredicted RBP16.66■□□□□ 0.26
LINC01238-203ENST00000429456 EFCAB5A4FU69 1503 aa16.66■□□□□ 0.26
LINC01238-203ENST00000429456 CUL7Q14999 1698 aa16.65■□□□□ 0.26
LINC01238-203ENST00000429456 FYCO1Q9BQS8 1478 aa16.64■□□□□ 0.25
LINC01238-203ENST00000429456 AQRO60306 1485 aaKnown RBP eCLIP16.64■□□□□ 0.25
LINC01238-203ENST00000429456 FHOD3Q2V2M9 1422 aa16.63■□□□□ 0.25
LINC01238-203ENST00000429456 CTTNBP2Q8WZ74 1663 aa16.62■□□□□ 0.25
LINC01238-203ENST00000429456 CASKIN1Q8WXD9 1431 aa16.62■□□□□ 0.25
LINC01238-203ENST00000429456 P3H3Q8IVL6 736 aa16.62■□□□□ 0.25
LINC01238-203ENST00000429456 FAM50AQ14320 339 aaKnown RBP16.6■□□□□ 0.25
LINC01238-203ENST00000429456 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.6■□□□□ 0.25
LINC01238-203ENST00000429456 NESP48681 1621 aa16.59■□□□□ 0.25
LINC01238-203ENST00000429456 WDR97A6NE52 1622 aa16.57■□□□□ 0.24
LINC01238-203ENST00000429456 ATP1B4Q9UN42 357 aaPredicted RBP16.55■□□□□ 0.24
LINC01238-203ENST00000429456 FMN1Q68DA7 1419 aa16.54■□□□□ 0.24
LINC01238-203ENST00000429456 TIMELESSQ9UNS1 1208 aa16.53■□□□□ 0.24
LINC01238-203ENST00000429456 SIN3AQ96ST3 1273 aa16.53■□□□□ 0.24
LINC01238-203ENST00000429456 SNAPC4Q5SXM2 1469 aa16.52■□□□□ 0.24
LINC01238-203ENST00000429456 LAMC3Q9Y6N6 1575 aa16.52■□□□□ 0.23
LINC01238-203ENST00000429456 URB2Q14146 1524 aaKnown RBP16.52■□□□□ 0.23
LINC01238-203ENST00000429456 ABCA5Q8WWZ7 1642 aa16.5■□□□□ 0.23
LINC01238-203ENST00000429456 FGD6Q6ZV73 1430 aa16.5■□□□□ 0.23
LINC01238-203ENST00000429456 SAMD9Q5K651 1589 aa16.5■□□□□ 0.23
LINC01238-203ENST00000429456 LRRIQ1Q96JM4 1722 aa16.46■□□□□ 0.22
LINC01238-203ENST00000429456 SUPT16HQ9Y5B9 1047 aaKnown RBP16.45■□□□□ 0.22
LINC01238-203ENST00000429456 GAPVD1Q14C86 1478 aa16.44■□□□□ 0.22
LINC01238-203ENST00000429456 PPP1R15AO75807 674 aaPredicted RBP16.44■□□□□ 0.22
LINC01238-203ENST00000429456 MTUS2Q5JR59 1369 aa16.43■□□□□ 0.22
LINC01238-203ENST00000429456 TDRD9Q8NDG6 1382 aaKnown RBP16.43■□□□□ 0.22
LINC01238-203ENST00000429456 THOC2Q8NI27 1593 aaKnown RBP16.43■□□□□ 0.22
LINC01238-203ENST00000429456 GRIN2BQ13224 1484 aa16.43■□□□□ 0.22
LINC01238-203ENST00000429456 PHF23Q9BUL5 403 aaPredicted RBP16.43■□□□□ 0.22
LINC01238-203ENST00000429456 HFM1A2PYH4 1435 aa16.41■□□□□ 0.22
LINC01238-203ENST00000429456 KCNH8Q96L42 1107 aa16.41■□□□□ 0.22
LINC01238-203ENST00000429456 CCDC18Q5T9S5 1454 aa16.41■□□□□ 0.22
LINC01238-203ENST00000429456 PTPRKQ15262 1439 aa16.41■□□□□ 0.22
LINC01238-203ENST00000429456 DDX10Q13206 875 aaKnown RBP16.4■□□□□ 0.22
LINC01238-203ENST00000429456 NCOA2Q15596 1464 aa16.4■□□□□ 0.22
LINC01238-203ENST00000429456 PTPN23Q9H3S7 1636 aa16.4■□□□□ 0.22
LINC01238-203ENST00000429456 MYOM3Q5VTT5 1437 aa16.39■□□□□ 0.21
LINC01238-203ENST00000429456 UACAQ9BZF9 1416 aa16.39■□□□□ 0.21
LINC01238-203ENST00000429456 PDS5BQ9NTI5 1447 aa16.39■□□□□ 0.21
LINC01238-203ENST00000429456 SUPT6HQ7KZ85 1726 aaKnown RBP16.38■□□□□ 0.21
LINC01238-203ENST00000429456 KIF21AQ7Z4S6 1674 aa16.38■□□□□ 0.21
LINC01238-203ENST00000429456 EHBP1L1Q8N3D4 1523 aa16.37■□□□□ 0.21
LINC01238-203ENST00000429456 NAIPQ13075 1403 aa16.35■□□□□ 0.21
LINC01238-203ENST00000429456 ARHGEF11O15085 1522 aa16.35■□□□□ 0.21
LINC01238-203ENST00000429456 TARBP1Q13395 1621 aaKnown RBP16.34■□□□□ 0.21
LINC01238-203ENST00000429456 UGGT2Q9NYU1 1516 aa16.34■□□□□ 0.21
LINC01238-203ENST00000429456 TONSLQ96HA7 1378 aa16.33■□□□□ 0.21
LINC01238-203ENST00000429456 MAGI3Q5TCQ9 1506 aa16.31■□□□□ 0.2
LINC01238-203ENST00000429456 CCER2I3L3R5 266 aa16.3■□□□□ 0.2
LINC01238-203ENST00000429456 HIRIP3Q9BW71 556 aaPredicted RBP16.29■□□□□ 0.2
LINC01238-203ENST00000429456 TCOF1Q13428 1488 aaKnown RBP16.29■□□□□ 0.2
LINC01238-203ENST00000429456 PBRM1Q86U86 1689 aa16.28■□□□□ 0.2
LINC01238-203ENST00000429456 HECW1Q76N89 1606 aa16.27■□□□□ 0.19
LINC01238-203ENST00000429456 KDM5BQ9UGL1 1544 aa16.27■□□□□ 0.19
LINC01238-203ENST00000429456 GCC2Q8IWJ2 1684 aa16.26■□□□□ 0.19
LINC01238-203ENST00000429456 ANP32CO43423 234 aa16.25■□□□□ 0.19
LINC01238-203ENST00000429456 IQGAP2Q13576 1575 aa16.24■□□□□ 0.19
LINC01238-203ENST00000429456 DNAJC5BQ9UF47 199 aa16.24■□□□□ 0.19
LINC01238-203ENST00000429456 AKNAQ7Z591 1439 aa16.23■□□□□ 0.19
LINC01238-203ENST00000429456 ADAMTS12P58397 1594 aa16.22■□□□□ 0.19
LINC01238-203ENST00000429456 EPRSP07814 1512 aaKnown RBP16.22■□□□□ 0.19
LINC01238-203ENST00000429456 PRKCSHP14314 528 aaPredicted RBP16.2■□□□□ 0.18
LINC01238-203ENST00000429456 DENND4BO75064 1496 aaPredicted RBP16.19■□□□□ 0.18
LINC01238-203ENST00000429456 MIA2Q96PC5 1412 aa16.19■□□□□ 0.18
LINC01238-203ENST00000429456 TSHZ2Q9NRE2 1034 aa16.19■□□□□ 0.18
LINC01238-203ENST00000429456 RRP7BPQ9NSQ0 103 aa16.19■□□□□ 0.18
LINC01238-203ENST00000429456 WDR62O43379 1518 aa16.19■□□□□ 0.18
LINC01238-203ENST00000429456 KDM6BO15054 1643 aa16.17■□□□□ 0.18
LINC01238-203ENST00000429456 CDK13Q14004 1512 aaKnown RBP16.16■□□□□ 0.18
LINC01238-203ENST00000429456 CHIC2Q9UKJ5 165 aa16.16■□□□□ 0.18
LINC01238-203ENST00000429456 FKBP8Q14318 412 aa16.14■□□□□ 0.17
LINC01238-203ENST00000429456 MRC2Q9UBG0 1479 aa16.14■□□□□ 0.17
LINC01238-203ENST00000429456 TRIM52Q96A61 297 aa16.12■□□□□ 0.17
LINC01238-203ENST00000429456 MPHOSPH9Q99550 1183 aa16.1■□□□□ 0.17
LINC01238-203ENST00000429456 BCANQ96GW7 911 aa16.1■□□□□ 0.17
LINC01238-203ENST00000429456 SLC24A1O60721 1099 aa16.09■□□□□ 0.17
LINC01238-203ENST00000429456 HSPA5P11021 654 aaKnown RBP16.09■□□□□ 0.17
LINC01238-203ENST00000429456 ROCK1Q13464 1354 aa16.08■□□□□ 0.16
LINC01238-203ENST00000429456 WASHC2AQ641Q2 1341 aa16.08■□□□□ 0.16
LINC01238-203ENST00000429456 KIAA0556O60303 1618 aa16.08■□□□□ 0.16
LINC01238-203ENST00000429456 NEFLP07196 543 aa16.07■□□□□ 0.16
LINC01238-203ENST00000429456 IFT140Q96RY7 1462 aa16.07■□□□□ 0.16
LINC01238-203ENST00000429456 KIAA0586Q9BVV6 1533 aa16.07■□□□□ 0.16
LINC01238-203ENST00000429456 DAPK1P53355 1430 aa16.07■□□□□ 0.16
LINC01238-203ENST00000429456 DNMT1P26358 1616 aaKnown RBP16.06■□□□□ 0.16
LINC01238-203ENST00000429456 DISP1Q96F81 1524 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms