RNA–Protein interactions for RNA: ENST00000425518.5

SMARCC1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 2

Gene SMARCC1, Length 3,827 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-202ENST00000425518 CFTRP13569 1480 aa10.76□□□□□ -0.69
SMARCC1-202ENST00000425518 SETD5Q9C0A6 1442 aa10.74□□□□□ -0.69
SMARCC1-202ENST00000425518 CC2D2AQ9P2K1 1620 aa10.74□□□□□ -0.69
SMARCC1-202ENST00000425518 PHLDB1Q86UU1 1377 aa10.73□□□□□ -0.69
SMARCC1-202ENST00000425518 HMGXB3Q12766 1538 aa10.72□□□□□ -0.69
SMARCC1-202ENST00000425518 TSHZ2Q9NRE2 1034 aa10.71□□□□□ -0.7
SMARCC1-202ENST00000425518 FKBP8Q14318 412 aa10.7□□□□□ -0.7
SMARCC1-202ENST00000425518 MAPKBP1O60336 1514 aa10.69□□□□□ -0.7
SMARCC1-202ENST00000425518 LRRC9Q6ZRR7 1453 aa10.69□□□□□ -0.7
SMARCC1-202ENST00000425518 CADPSQ9ULU8 1353 aa10.68□□□□□ -0.7
SMARCC1-202ENST00000425518 TRIM52Q96A61 297 aa10.68□□□□□ -0.7
SMARCC1-202ENST00000425518 TIAM1Q13009 1591 aa10.67□□□□□ -0.7
SMARCC1-202ENST00000425518 FGD5Q6ZNL6 1462 aa10.66□□□□□ -0.7
SMARCC1-202ENST00000425518 PPP1R15AO75807 674 aaPredicted RBP10.66□□□□□ -0.7
SMARCC1-202ENST00000425518 ANP32CO43423 234 aa10.66□□□□□ -0.7
SMARCC1-202ENST00000425518 FHAD1B1AJZ9 1412 aa10.66□□□□□ -0.7
SMARCC1-202ENST00000425518 FHOD3Q2V2M9 1422 aa10.65□□□□□ -0.7
SMARCC1-202ENST00000425518 WDR97A6NE52 1622 aa10.65□□□□□ -0.7
SMARCC1-202ENST00000425518 NEFLP07196 543 aa10.64□□□□□ -0.71
SMARCC1-202ENST00000425518 TIMELESSQ9UNS1 1208 aa10.62□□□□□ -0.71
SMARCC1-202ENST00000425518 MAP3K1Q13233 1512 aa10.61□□□□□ -0.71
SMARCC1-202ENST00000425518 TONSLQ96HA7 1378 aa10.61□□□□□ -0.71
SMARCC1-202ENST00000425518 RAD54L2Q9Y4B4 1467 aa10.6□□□□□ -0.71
SMARCC1-202ENST00000425518 MTUS2Q5JR59 1369 aa10.58□□□□□ -0.72
SMARCC1-202ENST00000425518 CCER2I3L3R5 266 aa10.58□□□□□ -0.72
SMARCC1-202ENST00000425518 PCF11O94913 1555 aaKnown RBP10.56□□□□□ -0.72
SMARCC1-202ENST00000425518 FANCD2Q9BXW9 1451 aa10.56□□□□□ -0.72
SMARCC1-202ENST00000425518 CHIC2Q9UKJ5 165 aa10.56□□□□□ -0.72
SMARCC1-202ENST00000425518 ANP32EQ9BTT0 268 aa10.55□□□□□ -0.72
SMARCC1-202ENST00000425518 RRP7BPQ9NSQ0 103 aa10.54□□□□□ -0.72
SMARCC1-202ENST00000425518 CASKIN1Q8WXD9 1431 aa10.54□□□□□ -0.72
SMARCC1-202ENST00000425518 FGD6Q6ZV73 1430 aa10.53□□□□□ -0.72
SMARCC1-202ENST00000425518 HNRNPUQ00839 825 aaKnown RBP eCLIP10.53□□□□□ -0.72
SMARCC1-202ENST00000425518 ARID3CA6NKF2 412 aa10.52□□□□□ -0.73
SMARCC1-202ENST00000425518 TDRD9Q8NDG6 1382 aaKnown RBP10.52□□□□□ -0.73
SMARCC1-202ENST00000425518 FYCO1Q9BQS8 1478 aa10.52□□□□□ -0.73
SMARCC1-202ENST00000425518 IRX6P78412 446 aaPredicted RBP10.52□□□□□ -0.73
SMARCC1-202ENST00000425518 PTPRKQ15262 1439 aa10.51□□□□□ -0.73
SMARCC1-202ENST00000425518 CCDC18Q5T9S5 1454 aa10.51□□□□□ -0.73
SMARCC1-202ENST00000425518 RBM19Q9Y4C8 960 aaKnown RBP10.51□□□□□ -0.73
SMARCC1-202ENST00000425518 FMN1Q68DA7 1419 aa10.51□□□□□ -0.73
SMARCC1-202ENST00000425518 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.5□□□□□ -0.73
SMARCC1-202ENST00000425518 POLA1P09884 1462 aaPredicted RBP10.5□□□□□ -0.73
SMARCC1-202ENST00000425518 NESP48681 1621 aa10.49□□□□□ -0.73
SMARCC1-202ENST00000425518 UACAQ9BZF9 1416 aa10.48□□□□□ -0.73
SMARCC1-202ENST00000425518 ABCA10Q8WWZ4 1543 aa10.48□□□□□ -0.73
SMARCC1-202ENST00000425518 TOPBP1Q92547 1522 aa10.48□□□□□ -0.73
SMARCC1-202ENST00000425518 HSPA5P11021 654 aaKnown RBP10.48□□□□□ -0.73
SMARCC1-202ENST00000425518 CFAP43Q8NDM7 1665 aa10.48□□□□□ -0.73
SMARCC1-202ENST00000425518 HFM1A2PYH4 1435 aa10.47□□□□□ -0.73
SMARCC1-202ENST00000425518 AQRO60306 1485 aaKnown RBP eCLIP10.46□□□□□ -0.733e-7■■■■■ 28.9
SMARCC1-202ENST00000425518 EFCAB5A4FU69 1503 aa10.46□□□□□ -0.73
SMARCC1-202ENST00000425518 FOXD1Q16676 465 aa10.46□□□□□ -0.73
SMARCC1-202ENST00000425518 NAIPQ13075 1403 aa10.46□□□□□ -0.74
SMARCC1-202ENST00000425518 NCOA2Q15596 1464 aa10.45□□□□□ -0.74
SMARCC1-202ENST00000425518 PRDM2Q13029 1718 aa10.44□□□□□ -0.74
SMARCC1-202ENST00000425518 EIF4G2P78344 907 aaKnown RBP eCLIP10.44□□□□□ -0.74
SMARCC1-202ENST00000425518 DNMBPQ6XZF7 1577 aa10.44□□□□□ -0.74
SMARCC1-202ENST00000425518 MYOM3Q5VTT5 1437 aa10.44□□□□□ -0.74
SMARCC1-202ENST00000425518 WASHC2AQ641Q2 1341 aa10.44□□□□□ -0.74
SMARCC1-202ENST00000425518 CNGB1Q14028 1251 aaPredicted RBP10.44□□□□□ -0.74
SMARCC1-202ENST00000425518 FAM9BQ8IZU0 186 aa10.43□□□□□ -0.74
SMARCC1-202ENST00000425518 SNAPC4Q5SXM2 1469 aa10.42□□□□□ -0.74
SMARCC1-202ENST00000425518 CCDC184Q52MB2 194 aa10.42□□□□□ -0.74
SMARCC1-202ENST00000425518 L3MBTL2Q969R5 705 aa10.42□□□□□ -0.74
SMARCC1-202ENST00000425518 MPHOSPH9Q99550 1183 aa10.42□□□□□ -0.74
SMARCC1-202ENST00000425518 CDK11AQ9UQ88 783 aaPredicted RBP10.41□□□□□ -0.74
SMARCC1-202ENST00000425518 PTPN23Q9H3S7 1636 aa10.41□□□□□ -0.74
SMARCC1-202ENST00000425518 GAPVD1Q14C86 1478 aa10.39□□□□□ -0.75
SMARCC1-202ENST00000425518 C11orf95C9JLR9 678 aaPredicted RBP10.39□□□□□ -0.75
SMARCC1-202ENST00000425518 MRS2Q9HD23 443 aa10.39□□□□□ -0.75
SMARCC1-202ENST00000425518 POLR3GLQ9BT43 218 aa10.38□□□□□ -0.75
SMARCC1-202ENST00000425518 URB2Q14146 1524 aaKnown RBP10.37□□□□□ -0.75
SMARCC1-202ENST00000425518 CUL7Q14999 1698 aa10.37□□□□□ -0.75
SMARCC1-202ENST00000425518 GRIN2BQ13224 1484 aa10.37□□□□□ -0.75
SMARCC1-202ENST00000425518 MSH5O43196 834 aa10.35□□□□□ -0.75
SMARCC1-202ENST00000425518 PRKRIP1Q9H875 184 aaPredicted RBP10.35□□□□□ -0.75
SMARCC1-202ENST00000425518 SLC4A1APQ9BWU0 796 aaKnown RBP10.35□□□□□ -0.75
SMARCC1-202ENST00000425518 NBPF8Q3BBV2 869 aa10.35□□□□□ -0.75
SMARCC1-202ENST00000425518 ERICH6Q7L0X2 663 aa10.35□□□□□ -0.75
SMARCC1-202ENST00000425518 CTTNBP2Q8WZ74 1663 aa10.34□□□□□ -0.75
SMARCC1-202ENST00000425518 ZNF326Q5BKZ1 582 aaKnown RBP10.34□□□□□ -0.75
SMARCC1-202ENST00000425518 B4GALNT3Q6L9W6 998 aa10.33□□□□□ -0.76
SMARCC1-202ENST00000425518 ZNF644Q9H582 1327 aaPredicted RBP10.33□□□□□ -0.76
SMARCC1-202ENST00000425518 EHBP1L1Q8N3D4 1523 aa10.33□□□□□ -0.76
SMARCC1-202ENST00000425518 KDM5BQ9UGL1 1544 aa10.33□□□□□ -0.76
SMARCC1-202ENST00000425518 SENP3-EIF4A1A0A087X0R7 540 aa10.33□□□□□ -0.76
SMARCC1-202ENST00000425518 PPP4R2Q9NY27 417 aa10.33□□□□□ -0.76
SMARCC1-202ENST00000425518 SUPT6HQ7KZ85 1726 aaKnown RBP10.33□□□□□ -0.76
SMARCC1-202ENST00000425518 MAGI3Q5TCQ9 1506 aa10.33□□□□□ -0.76
SMARCC1-202ENST00000425518 CCDC7Q96M83 1385 aa10.32□□□□□ -0.76
SMARCC1-202ENST00000425518 UGGT2Q9NYU1 1516 aa10.32□□□□□ -0.76
SMARCC1-202ENST00000425518 CNTLNQ9NXG0 1405 aa10.31□□□□□ -0.76
SMARCC1-202ENST00000425518 PDS5BQ9NTI5 1447 aa10.31□□□□□ -0.76
SMARCC1-202ENST00000425518 DENND4BO75064 1496 aaPredicted RBP10.31□□□□□ -0.76
SMARCC1-202ENST00000425518 SAMD9Q5K651 1589 aa10.31□□□□□ -0.76
SMARCC1-202ENST00000425518 ZNF777Q9ULD5 760 aaPredicted RBP10.3□□□□□ -0.76
SMARCC1-202ENST00000425518 CDK13Q14004 1512 aaKnown RBP10.29□□□□□ -0.76
SMARCC1-202ENST00000425518 KIF7Q2M1P5 1343 aa10.29□□□□□ -0.76
SMARCC1-202ENST00000425518 EPRSP07814 1512 aaKnown RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms