RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 TIAM1Q13009 1591 aa15.94■□□□□ 0.14
LIMS1-207ENST00000422797 KANK4Q5T7N3 995 aaPredicted RBP15.92■□□□□ 0.14
LIMS1-207ENST00000422797 FHAD1B1AJZ9 1412 aa15.9■□□□□ 0.14
LIMS1-207ENST00000422797 TIMELESSQ9UNS1 1208 aa15.89■□□□□ 0.13
LIMS1-207ENST00000422797 RANGAP1P46060 587 aaPredicted RBP15.88■□□□□ 0.13
LIMS1-207ENST00000422797 CFAP43Q8NDM7 1665 aa15.87■□□□□ 0.13
LIMS1-207ENST00000422797 SETD5Q9C0A6 1442 aa15.85■□□□□ 0.13
LIMS1-207ENST00000422797 IGF1RP08069 1367 aa15.85■□□□□ 0.13
LIMS1-207ENST00000422797 LRRC9Q6ZRR7 1453 aa15.84■□□□□ 0.13
LIMS1-207ENST00000422797 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.84■□□□□ 0.13
LIMS1-207ENST00000422797 RAB3GAP2Q9H2M9 1393 aa15.83■□□□□ 0.12
LIMS1-207ENST00000422797 MAPKBP1O60336 1514 aa15.83■□□□□ 0.12
LIMS1-207ENST00000422797 EFCAB5A4FU69 1503 aa15.82■□□□□ 0.12
LIMS1-207ENST00000422797 CARMIL1Q5VZK9 1371 aa15.81■□□□□ 0.12
LIMS1-207ENST00000422797 AQRO60306 1485 aaKnown RBP eCLIP15.8■□□□□ 0.12
LIMS1-207ENST00000422797 CADPSQ9ULU8 1353 aa15.79■□□□□ 0.12
LIMS1-207ENST00000422797 SUPT16HQ9Y5B9 1047 aaKnown RBP15.78■□□□□ 0.12
LIMS1-207ENST00000422797 FYCO1Q9BQS8 1478 aa15.78■□□□□ 0.12
LIMS1-207ENST00000422797 FGD5Q6ZNL6 1462 aa15.75■□□□□ 0.11
LIMS1-207ENST00000422797 CACNB1Q02641 598 aaPredicted RBP15.73■□□□□ 0.11
LIMS1-207ENST00000422797 CUL7Q14999 1698 aa15.73■□□□□ 0.11
LIMS1-207ENST00000422797 PCF11O94913 1555 aaKnown RBP15.72■□□□□ 0.11
LIMS1-207ENST00000422797 PLPPR3Q6T4P5 718 aa15.71■□□□□ 0.11
LIMS1-207ENST00000422797 CASKIN1Q8WXD9 1431 aa15.71■□□□□ 0.11
LIMS1-207ENST00000422797 PHLDB1Q86UU1 1377 aa15.7■□□□□ 0.1
LIMS1-207ENST00000422797 DNMBPQ6XZF7 1577 aa15.69■□□□□ 0.1
LIMS1-207ENST00000422797 ABCA10Q8WWZ4 1543 aa15.69■□□□□ 0.1
LIMS1-207ENST00000422797 CCER2I3L3R5 266 aa15.66■□□□□ 0.1
LIMS1-207ENST00000422797 FMN1Q68DA7 1419 aa15.66■□□□□ 0.1
LIMS1-207ENST00000422797 THOC2Q8NI27 1593 aaKnown RBP15.64■□□□□ 0.09
LIMS1-207ENST00000422797 WDR97A6NE52 1622 aa15.64■□□□□ 0.09
LIMS1-207ENST00000422797 CTTNBP2Q8WZ74 1663 aa15.64■□□□□ 0.09
LIMS1-207ENST00000422797 ITGAEP38570 1179 aa15.63■□□□□ 0.09
LIMS1-207ENST00000422797 FANCD2Q9BXW9 1451 aa15.62■□□□□ 0.09
LIMS1-207ENST00000422797 FAM50AQ14320 339 aaKnown RBP15.59■□□□□ 0.09
LIMS1-207ENST00000422797 FGD6Q6ZV73 1430 aa15.59■□□□□ 0.09
LIMS1-207ENST00000422797 PPP1R15AO75807 674 aaPredicted RBP15.58■□□□□ 0.09
LIMS1-207ENST00000422797 HFM1A2PYH4 1435 aa15.57■□□□□ 0.08
LIMS1-207ENST00000422797 KIF21AQ7Z4S6 1674 aa15.57■□□□□ 0.08
LIMS1-207ENST00000422797 UACAQ9BZF9 1416 aa15.57■□□□□ 0.08
LIMS1-207ENST00000422797 TOPBP1Q92547 1522 aa15.56■□□□□ 0.08
LIMS1-207ENST00000422797 NEFLP07196 543 aa15.56■□□□□ 0.08
LIMS1-207ENST00000422797 TSHZ2Q9NRE2 1034 aa15.56■□□□□ 0.08
LIMS1-207ENST00000422797 FHOD3Q2V2M9 1422 aa15.55■□□□□ 0.08
LIMS1-207ENST00000422797 POLA1P09884 1462 aaPredicted RBP15.55■□□□□ 0.08
LIMS1-207ENST00000422797 SNAPC4Q5SXM2 1469 aa15.55■□□□□ 0.08
LIMS1-207ENST00000422797 ANP32CO43423 234 aa15.54■□□□□ 0.08
LIMS1-207ENST00000422797 SAMD9Q5K651 1589 aa15.54■□□□□ 0.08
LIMS1-207ENST00000422797 CCDC18Q5T9S5 1454 aa15.54■□□□□ 0.08
LIMS1-207ENST00000422797 TONSLQ96HA7 1378 aa15.54■□□□□ 0.08
LIMS1-207ENST00000422797 EHBP1L1Q8N3D4 1523 aa15.52■□□□□ 0.08
LIMS1-207ENST00000422797 PTPN23Q9H3S7 1636 aa15.52■□□□□ 0.08
LIMS1-207ENST00000422797 DDX10Q13206 875 aaKnown RBP15.51■□□□□ 0.07
LIMS1-207ENST00000422797 AKNAQ7Z591 1439 aa15.5■□□□□ 0.07
LIMS1-207ENST00000422797 MTUS2Q5JR59 1369 aa15.5■□□□□ 0.07
LIMS1-207ENST00000422797 SUPT6HQ7KZ85 1726 aaKnown RBP15.49■□□□□ 0.07
LIMS1-207ENST00000422797 MYOM3Q5VTT5 1437 aa15.48■□□□□ 0.07
LIMS1-207ENST00000422797 SIN3AQ96ST3 1273 aa15.48■□□□□ 0.07
LIMS1-207ENST00000422797 ANP32EQ9BTT0 268 aa15.47■□□□□ 0.07
LIMS1-207ENST00000422797 GRIN2BQ13224 1484 aa15.47■□□□□ 0.07
LIMS1-207ENST00000422797 LAMC3Q9Y6N6 1575 aa15.47■□□□□ 0.07
LIMS1-207ENST00000422797 ABCA5Q8WWZ7 1642 aa15.46■□□□□ 0.07
LIMS1-207ENST00000422797 RAD54L2Q9Y4B4 1467 aa15.45■□□□□ 0.06
LIMS1-207ENST00000422797 ARHGEF11O15085 1522 aa15.44■□□□□ 0.06
LIMS1-207ENST00000422797 NAIPQ13075 1403 aa15.44■□□□□ 0.06
LIMS1-207ENST00000422797 NCOA2Q15596 1464 aa15.44■□□□□ 0.06
LIMS1-207ENST00000422797 TCOF1Q13428 1488 aaKnown RBP15.43■□□□□ 0.06
LIMS1-207ENST00000422797 GCC2Q8IWJ2 1684 aa15.43■□□□□ 0.06
LIMS1-207ENST00000422797 FKBP8Q14318 412 aa15.43■□□□□ 0.06
LIMS1-207ENST00000422797 HECW1Q76N89 1606 aa15.42■□□□□ 0.06
LIMS1-207ENST00000422797 UGGT2Q9NYU1 1516 aa15.42■□□□□ 0.06
LIMS1-207ENST00000422797 ATP1B4Q9UN42 357 aaPredicted RBP15.42■□□□□ 0.06
LIMS1-207ENST00000422797 KCNH8Q96L42 1107 aa15.41■□□□□ 0.06
LIMS1-207ENST00000422797 ERICH6BQ5W0A0 696 aa15.4■□□□□ 0.06
LIMS1-207ENST00000422797 P3H3Q8IVL6 736 aa15.39■□□□□ 0.05
LIMS1-207ENST00000422797 MIA2Q96PC5 1412 aa15.37■□□□□ 0.05
LIMS1-207ENST00000422797 GAPVD1Q14C86 1478 aa15.36■□□□□ 0.05
LIMS1-207ENST00000422797 KDM5BQ9UGL1 1544 aa15.36■□□□□ 0.05
LIMS1-207ENST00000422797 PTPRKQ15262 1439 aa15.36■□□□□ 0.05
LIMS1-207ENST00000422797 LRRIQ1Q96JM4 1722 aa15.34■□□□□ 0.05
LIMS1-207ENST00000422797 URB2Q14146 1524 aaKnown RBP15.34■□□□□ 0.05
LIMS1-207ENST00000422797 ERCC6Q03468 1493 aa15.33■□□□□ 0.04
LIMS1-207ENST00000422797 PDS5BQ9NTI5 1447 aa15.32■□□□□ 0.04
LIMS1-207ENST00000422797 CNTLNQ9NXG0 1405 aa15.28■□□□□ 0.04
LIMS1-207ENST00000422797 ROCK1Q13464 1354 aa15.28■□□□□ 0.04
LIMS1-207ENST00000422797 BCANQ96GW7 911 aa15.27■□□□□ 0.04
LIMS1-207ENST00000422797 EIF4G2P78344 907 aaKnown RBP eCLIP15.26■□□□□ 0.03
LIMS1-207ENST00000422797 TRIM52Q96A61 297 aa15.26■□□□□ 0.03
LIMS1-207ENST00000422797 RBM19Q9Y4C8 960 aaKnown RBP15.26■□□□□ 0.03
LIMS1-207ENST00000422797 IQGAP2Q13576 1575 aa15.26■□□□□ 0.03
LIMS1-207ENST00000422797 NESP48681 1621 aa15.25■□□□□ 0.03
LIMS1-207ENST00000422797 EPRSP07814 1512 aaKnown RBP15.24■□□□□ 0.03
LIMS1-207ENST00000422797 TARBP1Q13395 1621 aaKnown RBP15.23■□□□□ 0.03
LIMS1-207ENST00000422797 MAGI3Q5TCQ9 1506 aa15.23■□□□□ 0.03
LIMS1-207ENST00000422797 WDR62O43379 1518 aa15.22■□□□□ 0.03
LIMS1-207ENST00000422797 NCOA1Q15788 1441 aa15.22■□□□□ 0.03
LIMS1-207ENST00000422797 FANCIQ9NVI1 1328 aa15.22■□□□□ 0.03
LIMS1-207ENST00000422797 TDRD9Q8NDG6 1382 aaKnown RBP15.22■□□□□ 0.03
LIMS1-207ENST00000422797 HSPA5P11021 654 aaKnown RBP15.21■□□□□ 0.03
LIMS1-207ENST00000422797 HNRNPUQ00839 825 aaKnown RBP eCLIP15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms