RNA–Protein interactions for RNA: ENST00000422704.6

SEMA4D-208, Transcript of semaphorin 4D, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEMA4D, Length 4,382 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-208ENST00000422704 SOGA1O94964 1423 aa14.69□□□□□ -0.06
SEMA4D-208ENST00000422704 SLC24A1O60721 1099 aa14.66□□□□□ -0.06
SEMA4D-208ENST00000422704 CADPSQ9ULU8 1353 aa14.65□□□□□ -0.06
SEMA4D-208ENST00000422704 KIF21BO75037 1637 aa14.63□□□□□ -0.07
SEMA4D-208ENST00000422704 GOLGA3Q08378 1498 aa14.63□□□□□ -0.07
SEMA4D-208ENST00000422704 TNIKQ9UKE5 1360 aa14.62□□□□□ -0.07
SEMA4D-208ENST00000422704 CEP164Q9UPV0 1460 aa14.61□□□□□ -0.07
SEMA4D-208ENST00000422704 CANXP27824 592 aaKnown RBP14.6□□□□□ -0.07
SEMA4D-208ENST00000422704 CUX1P39880 1505 aa14.59□□□□□ -0.07
SEMA4D-208ENST00000422704 RUSC2Q8N2Y8 1516 aa14.59□□□□□ -0.07
SEMA4D-208ENST00000422704 SENP3Q9H4L4 574 aaPredicted RBP14.58□□□□□ -0.08
SEMA4D-208ENST00000422704 TONSLQ96HA7 1378 aa14.55□□□□□ -0.08
SEMA4D-208ENST00000422704 CHGAP10645 457 aaKnown RBP14.53□□□□□ -0.08
SEMA4D-208ENST00000422704 KDM2AQ9Y2K7 1162 aa14.52□□□□□ -0.08
SEMA4D-208ENST00000422704 NBR1Q14596 966 aa14.52□□□□□ -0.08
SEMA4D-208ENST00000422704 CEP162Q5TB80 1403 aa14.52□□□□□ -0.09
SEMA4D-208ENST00000422704 LAMC3Q9Y6N6 1575 aa14.52□□□□□ -0.09
SEMA4D-208ENST00000422704 ANP32AP39687 249 aaKnown RBP14.5□□□□□ -0.09
SEMA4D-208ENST00000422704 PLPPR3Q6T4P5 718 aa14.5□□□□□ -0.09
SEMA4D-208ENST00000422704 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.5□□□□□ -0.09
SEMA4D-208ENST00000422704 ERICH3Q5RHP9 1530 aa14.49□□□□□ -0.09
SEMA4D-208ENST00000422704 KIF27Q86VH2 1401 aa14.49□□□□□ -0.09
SEMA4D-208ENST00000422704 FANCD2Q9BXW9 1451 aa14.49□□□□□ -0.09
SEMA4D-208ENST00000422704 ZBTB47Q9UFB7 747 aaPredicted RBP14.47□□□□□ -0.09
SEMA4D-208ENST00000422704 ARXQ96QS3 562 aa14.47□□□□□ -0.09
SEMA4D-208ENST00000422704 EIF5BO60841 1220 aaKnown RBP14.46□□□□□ -0.09
SEMA4D-208ENST00000422704 MRS2Q9HD23 443 aa14.46□□□□□ -0.09
SEMA4D-208ENST00000422704 DNMBPQ6XZF7 1577 aa14.45□□□□□ -0.1
SEMA4D-208ENST00000422704 RRP7BPQ9NSQ0 103 aa14.44□□□□□ -0.1
SEMA4D-208ENST00000422704 TMC1Q8TDI8 760 aa14.44□□□□□ -0.1
SEMA4D-208ENST00000422704 PRXQ9BXM0 1461 aa14.43□□□□□ -0.1
SEMA4D-208ENST00000422704 CCDC136Q96JN2 1154 aa14.43□□□□□ -0.1
SEMA4D-208ENST00000422704 FGD5Q6ZNL6 1462 aa14.4□□□□□ -0.1
SEMA4D-208ENST00000422704 RAPGEF2Q9Y4G8 1499 aa14.4□□□□□ -0.1
SEMA4D-208ENST00000422704 PDS5BQ9NTI5 1447 aa14.38□□□□□ -0.11
SEMA4D-208ENST00000422704 TOPBP1Q92547 1522 aa14.36□□□□□ -0.11
SEMA4D-208ENST00000422704 CLIP1P30622 1438 aa14.36□□□□□ -0.11
SEMA4D-208ENST00000422704 SIN3AQ96ST3 1273 aa14.36□□□□□ -0.11
SEMA4D-208ENST00000422704 NESP48681 1621 aa14.36□□□□□ -0.11
SEMA4D-208ENST00000422704 CUX2O14529 1486 aa14.36□□□□□ -0.11
SEMA4D-208ENST00000422704 NEFMP07197 916 aa14.35□□□□□ -0.11
SEMA4D-208ENST00000422704 RGL3Q3MIN7 710 aa14.33□□□□□ -0.12
SEMA4D-208ENST00000422704 ABCA10Q8WWZ4 1543 aa14.32□□□□□ -0.12
SEMA4D-208ENST00000422704 PLEKHG5O94827 1062 aa14.31□□□□□ -0.12
SEMA4D-208ENST00000422704 SUPT16HQ9Y5B9 1047 aaKnown RBP14.31□□□□□ -0.12
SEMA4D-208ENST00000422704 POLA1P09884 1462 aaPredicted RBP14.29□□□□□ -0.12
SEMA4D-208ENST00000422704 MTUS2Q5JR59 1369 aa14.29□□□□□ -0.12
SEMA4D-208ENST00000422704 VPS8Q8N3P4 1428 aa14.29□□□□□ -0.12
SEMA4D-208ENST00000422704 HSP90AA1P07900 732 aaKnown RBP14.29□□□□□ -0.12
SEMA4D-208ENST00000422704 IGF1RP08069 1367 aa14.28□□□□□ -0.12
SEMA4D-208ENST00000422704 URB2Q14146 1524 aaKnown RBP14.27□□□□□ -0.12
SEMA4D-208ENST00000422704 STAG3Q9UJ98 1225 aa14.27□□□□□ -0.13
SEMA4D-208ENST00000422704 WDR97A6NE52 1622 aa14.26□□□□□ -0.13
SEMA4D-208ENST00000422704 TSPY4P0CV99 314 aa14.25□□□□□ -0.13
SEMA4D-208ENST00000422704 TSPY10P0CW01 314 aa14.25□□□□□ -0.13
SEMA4D-208ENST00000422704 EIF4G2P78344 907 aaKnown RBP eCLIP14.25□□□□□ -0.13
SEMA4D-208ENST00000422704 CUL7Q14999 1698 aa14.25□□□□□ -0.13
SEMA4D-208ENST00000422704 KIF21AQ7Z4S6 1674 aa14.25□□□□□ -0.13
SEMA4D-208ENST00000422704 KCNH8Q96L42 1107 aa14.24□□□□□ -0.13
SEMA4D-208ENST00000422704 CARMIL1Q5VZK9 1371 aa14.23□□□□□ -0.13
SEMA4D-208ENST00000422704 RAD54L2Q9Y4B4 1467 aa14.21□□□□□ -0.13
SEMA4D-208ENST00000422704 WDR43Q15061 677 aaKnown RBP eCLIP14.2□□□□□ -0.14
SEMA4D-208ENST00000422704 MRC2Q9UBG0 1479 aa14.19□□□□□ -0.14
SEMA4D-208ENST00000422704 ABCA5Q8WWZ7 1642 aa14.18□□□□□ -0.14
SEMA4D-208ENST00000422704 ARAP1Q96P48 1450 aa14.18□□□□□ -0.14
SEMA4D-208ENST00000422704 NEUROD2Q15784 382 aa14.17□□□□□ -0.14
SEMA4D-208ENST00000422704 ESF1Q9H501 851 aaKnown RBP14.16□□□□□ -0.14
SEMA4D-208ENST00000422704 CHMP7Q8WUX9 453 aaPredicted RBP14.16□□□□□ -0.14
SEMA4D-208ENST00000422704 UPF2Q9HAU5 1272 aaKnown RBP14.15□□□□□ -0.14
SEMA4D-208ENST00000422704 DNAJC5BQ9UF47 199 aa14.15□□□□□ -0.14
SEMA4D-208ENST00000422704 B4GALNT3Q6L9W6 998 aa14.15□□□□□ -0.14
SEMA4D-208ENST00000422704 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.13□□□□□ -0.15
SEMA4D-208ENST00000422704 TARBP1Q13395 1621 aaKnown RBP14.13□□□□□ -0.15
SEMA4D-208ENST00000422704 ARHGAP35Q9NRY4 1499 aa14.12□□□□□ -0.15
SEMA4D-208ENST00000422704 GAPVD1Q14C86 1478 aa14.12□□□□□ -0.15
SEMA4D-208ENST00000422704 RTN4Q9NQC3 1192 aaKnown RBP14.1□□□□□ -0.15
SEMA4D-208ENST00000422704 WDR62O43379 1518 aa14.1□□□□□ -0.15
SEMA4D-208ENST00000422704 EFCAB5A4FU69 1503 aa14.1□□□□□ -0.15
SEMA4D-208ENST00000422704 CTTNBP2Q8WZ74 1663 aa14.1□□□□□ -0.15
SEMA4D-208ENST00000422704 TNNT2P45379 298 aaPredicted RBP14.09□□□□□ -0.15
SEMA4D-208ENST00000422704 NPM1P06748 294 aaKnown RBP eCLIP14.09□□□□□ -0.15
SEMA4D-208ENST00000422704 PPM1GO15355 546 aaPredicted RBP14.08□□□□□ -0.16
SEMA4D-208ENST00000422704 LAS1LQ9Y4W2 734 aaKnown RBP14.08□□□□□ -0.16
SEMA4D-208ENST00000422704 FOXD1Q16676 465 aa14.07□□□□□ -0.16
SEMA4D-208ENST00000422704 IFT140Q96RY7 1462 aa14.06□□□□□ -0.16
SEMA4D-208ENST00000422704 RGS3P49796 1198 aa14.06□□□□□ -0.16
SEMA4D-208ENST00000422704 MAP3K1Q13233 1512 aa14.06□□□□□ -0.16
SEMA4D-208ENST00000422704 CARD11Q9BXL7 1154 aa14.06□□□□□ -0.16
SEMA4D-208ENST00000422704 KANK4Q5T7N3 995 aaPredicted RBP14.06□□□□□ -0.16
SEMA4D-208ENST00000422704 FHAD1B1AJZ9 1412 aa14.05□□□□□ -0.16
SEMA4D-208ENST00000422704 PBRM1Q86U86 1689 aa14.04□□□□□ -0.16
SEMA4D-208ENST00000422704 TPRNQ4KMQ1 711 aa14.04□□□□□ -0.16
SEMA4D-208ENST00000422704 CFDP1Q9UEE9 299 aaPredicted RBP14.04□□□□□ -0.16
SEMA4D-208ENST00000422704 TDRD9Q8NDG6 1382 aaKnown RBP14.04□□□□□ -0.16
SEMA4D-208ENST00000422704 ZBTB7CA1YPR0 619 aa14.04□□□□□ -0.16
SEMA4D-208ENST00000422704 ANP32BQ92688 251 aaKnown RBP14.04□□□□□ -0.16
SEMA4D-208ENST00000422704 ANP32EQ9BTT0 268 aa14.04□□□□□ -0.16
SEMA4D-208ENST00000422704 PLEKHD1A6NEE1 506 aa14.02□□□□□ -0.16
SEMA4D-208ENST00000422704 CC2D1BQ5T0F9 858 aaKnown RBP14.02□□□□□ -0.16
SEMA4D-208ENST00000422704 ERCC6Q03468 1493 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms