RNA–Protein interactions for RNA: ENST00000422704.6

SEMA4D-208, Transcript of semaphorin 4D, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEMA4D, Length 4,382 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-208ENST00000422704 NISCHQ9Y2I1 1504 aa20.25■□□□□ 0.83
SEMA4D-208ENST00000422704 DCAF8L2P0C7V8 631 aa18.74■□□□□ 0.59
SEMA4D-208ENST00000422704 SUPT5HO00267 1087 aaKnown RBP18.01■□□□□ 0.47
SEMA4D-208ENST00000422704 SHROOM4Q9ULL8 1493 aa17.68■□□□□ 0.42
SEMA4D-208ENST00000422704 EHMT2Q96KQ7 1210 aa17.67■□□□□ 0.42
SEMA4D-208ENST00000422704 CCDC180Q9P1Z9 1646 aa17.63■□□□□ 0.41
SEMA4D-208ENST00000422704 ZCCHC6Q5VYS8 1495 aaKnown RBP17.08■□□□□ 0.32
SEMA4D-208ENST00000422704 FAM9AQ8IZU1 332 aaPredicted RBP17.07■□□□□ 0.32
SEMA4D-208ENST00000422704 TTBK1Q5TCY1 1321 aaPredicted RBP17.02■□□□□ 0.32
SEMA4D-208ENST00000422704 PCGF6Q9BYE7 350 aa16.99■□□□□ 0.31
SEMA4D-208ENST00000422704 DCAF1Q9Y4B6 1507 aa16.83■□□□□ 0.28
SEMA4D-208ENST00000422704 RANGAP1P46060 587 aaPredicted RBP16.69■□□□□ 0.26
SEMA4D-208ENST00000422704 MYO15BQ96JP2 1530 aa16.55■□□□□ 0.24
SEMA4D-208ENST00000422704 APLP2Q06481 763 aa16.54■□□□□ 0.24
SEMA4D-208ENST00000422704 PPARGC1BQ86YN6 1023 aaKnown RBP16.53■□□□□ 0.24
SEMA4D-208ENST00000422704 TRIM41Q8WV44 630 aa16.41■□□□□ 0.22
SEMA4D-208ENST00000422704 CCER1Q8TC90 406 aaPredicted RBP16.38■□□□□ 0.21
SEMA4D-208ENST00000422704 NACADO15069 1562 aa16.34■□□□□ 0.21
SEMA4D-208ENST00000422704 ABCC9O60706 1549 aa16.29■□□□□ 0.2
SEMA4D-208ENST00000422704 PELP1Q8IZL8 1130 aaKnown RBP16.28■□□□□ 0.2
SEMA4D-208ENST00000422704 YTHDC1Q96MU7 727 aaKnown RBP16.27■□□□□ 0.2
SEMA4D-208ENST00000422704 ATP1B4Q9UN42 357 aaPredicted RBP16.26■□□□□ 0.19
SEMA4D-208ENST00000422704 LOC105371045A0A1W2PR82 267 aa16.23■□□□□ 0.19
SEMA4D-208ENST00000422704 UBTFP17480 764 aaKnown RBP16.23■□□□□ 0.19
SEMA4D-208ENST00000422704 SCRIBQ14160 1630 aa16.13■□□□□ 0.17
SEMA4D-208ENST00000422704 RB1CC1Q8TDY2 1594 aa16.13■□□□□ 0.17
SEMA4D-208ENST00000422704 CENPBP07199 599 aaPredicted RBP16.12■□□□□ 0.17
SEMA4D-208ENST00000422704 ZEB1P37275 1124 aaPredicted RBP16.03■□□□□ 0.16
SEMA4D-208ENST00000422704 HRCP23327 699 aa15.97■□□□□ 0.15
SEMA4D-208ENST00000422704 CHIC1Q5VXU3 224 aa15.96■□□□□ 0.15
SEMA4D-208ENST00000422704 ITGAEP38570 1179 aa15.94■□□□□ 0.14
SEMA4D-208ENST00000422704 TRIM26Q12899 539 aaPredicted RBP15.91■□□□□ 0.14
SEMA4D-208ENST00000422704 ERICH6Q7L0X2 663 aa15.86■□□□□ 0.13
SEMA4D-208ENST00000422704 HNRNPUL2Q1KMD3 747 aaKnown RBP15.85■□□□□ 0.13
SEMA4D-208ENST00000422704 CNGB1Q14028 1251 aaPredicted RBP15.83■□□□□ 0.13
SEMA4D-208ENST00000422704 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.79■□□□□ 0.12
SEMA4D-208ENST00000422704 RSF1Q96T23 1441 aaPredicted RBP15.77■□□□□ 0.12
SEMA4D-208ENST00000422704 UNC13AQ9UPW8 1703 aa15.73■□□□□ 0.11
SEMA4D-208ENST00000422704 NEFLP07196 543 aa15.71■□□□□ 0.11
SEMA4D-208ENST00000422704 POLR3GLQ9BT43 218 aa15.68■□□□□ 0.1
SEMA4D-208ENST00000422704 BAZ1AQ9NRL2 1556 aaPredicted RBP15.65■□□□□ 0.1
SEMA4D-208ENST00000422704 CECR2Q9BXF3 1484 aa15.63■□□□□ 0.09
SEMA4D-208ENST00000422704 MROH2BQ7Z745 1585 aa15.61■□□□□ 0.09
SEMA4D-208ENST00000422704 BICRAQ9NZM4 1560 aa15.56■□□□□ 0.08
SEMA4D-208ENST00000422704 SMARCA4P51532 1647 aa15.52■□□□□ 0.08
SEMA4D-208ENST00000422704 DIEXFQ68CQ4 756 aaKnown RBP15.51■□□□□ 0.07
SEMA4D-208ENST00000422704 WIZO95785 1651 aa15.49■□□□□ 0.07
SEMA4D-208ENST00000422704 TOP2AP11388 1531 aaKnown RBP15.42■□□□□ 0.06
SEMA4D-208ENST00000422704 MYT1Q01538 1121 aa15.39■□□□□ 0.05
SEMA4D-208ENST00000422704 MYT1LQ9UL68 1186 aa15.38■□□□□ 0.05
SEMA4D-208ENST00000422704 PABPN1Q86U42 306 aaKnown RBP eCLIP15.38■□□□□ 0.05
SEMA4D-208ENST00000422704 BCANQ96GW7 911 aa15.38■□□□□ 0.05
SEMA4D-208ENST00000422704 PEG3Q9GZU2 1588 aa15.36■□□□□ 0.05
SEMA4D-208ENST00000422704 GTF3C3Q9Y5Q9 886 aa15.35■□□□□ 0.05
SEMA4D-208ENST00000422704 NEUROD1Q13562 356 aa15.33■□□□□ 0.04
SEMA4D-208ENST00000422704 FAM50AQ14320 339 aaKnown RBP15.3■□□□□ 0.04
SEMA4D-208ENST00000422704 SMARCA2P51531 1590 aa15.25■□□□□ 0.03
SEMA4D-208ENST00000422704 EIF4G1Q04637 1599 aaKnown RBP15.23■□□□□ 0.03
SEMA4D-208ENST00000422704 CCDC88BA6NC98 1476 aa15.2■□□□□ 0.02
SEMA4D-208ENST00000422704 ATAD2BQ9ULI0 1458 aa15.19■□□□□ 0.02
SEMA4D-208ENST00000422704 SLC4A1APQ9BWU0 796 aaKnown RBP15.18■□□□□ 0.02
SEMA4D-208ENST00000422704 TRIM52Q96A61 297 aa15.16■□□□□ 0.02
SEMA4D-208ENST00000422704 DAXXQ9UER7 740 aaPredicted RBP15.16■□□□□ 0.02
SEMA4D-208ENST00000422704 ARID3CA6NKF2 412 aa15.15■□□□□ 0.02
SEMA4D-208ENST00000422704 ZNF326Q5BKZ1 582 aaKnown RBP15.15■□□□□ 0.02
SEMA4D-208ENST00000422704 BAZ1BQ9UIG0 1483 aaKnown RBP15.14■□□□□ 0.01
SEMA4D-208ENST00000422704 P3H3Q8IVL6 736 aa15.13■□□□□ 0.01
SEMA4D-208ENST00000422704 HMGXB3Q12766 1538 aa15.08■□□□□ 0
SEMA4D-208ENST00000422704 ZNF316A6NFI3 1004 aaPredicted RBP15.04■□□□□ -0
SEMA4D-208ENST00000422704 NCAPD3P42695 1498 aa15.04■□□□□ -0
SEMA4D-208ENST00000422704 CLSPNQ9HAW4 1339 aa15.03■□□□□ -0
SEMA4D-208ENST00000422704 ACIN1Q9UKV3 1341 aaKnown RBP15□□□□□ -0.01
SEMA4D-208ENST00000422704 BCL11AQ9H165 835 aa14.99□□□□□ -0.01
SEMA4D-208ENST00000422704 FBLN2P98095 1184 aa14.97□□□□□ -0.01
SEMA4D-208ENST00000422704 CSRNP3Q8WYN3 585 aa14.95□□□□□ -0.02
SEMA4D-208ENST00000422704 ANP32CO43423 234 aa14.94□□□□□ -0.02
SEMA4D-208ENST00000422704 ABCC8Q09428 1581 aa14.92□□□□□ -0.02
SEMA4D-208ENST00000422704 RTL5Q5HYW3 569 aaPredicted RBP14.91□□□□□ -0.02
SEMA4D-208ENST00000422704 EEA1Q15075 1411 aa14.87□□□□□ -0.03
SEMA4D-208ENST00000422704 WRNQ14191 1432 aaPredicted RBP eCLIP14.86□□□□□ -0.03
SEMA4D-208ENST00000422704 HIRIP3Q9BW71 556 aaPredicted RBP14.85□□□□□ -0.03
SEMA4D-208ENST00000422704 DDX10Q13206 875 aaKnown RBP14.83□□□□□ -0.04
SEMA4D-208ENST00000422704 ZNF777Q9ULD5 760 aaPredicted RBP14.8□□□□□ -0.04
SEMA4D-208ENST00000422704 SALL2Q9Y467 1007 aaPredicted RBP14.8□□□□□ -0.04
SEMA4D-208ENST00000422704 CDK11AQ9UQ88 783 aaPredicted RBP14.8□□□□□ -0.04
SEMA4D-208ENST00000422704 CC2D2AQ9P2K1 1620 aa14.79□□□□□ -0.04
SEMA4D-208ENST00000422704 FKBP8Q14318 412 aa14.79□□□□□ -0.04
SEMA4D-208ENST00000422704 SCAF1Q9H7N4 1312 aaKnown RBP14.77□□□□□ -0.05
SEMA4D-208ENST00000422704 CFTRP13569 1480 aa14.76□□□□□ -0.05
SEMA4D-208ENST00000422704 SYNJ1O43426 1573 aa14.76□□□□□ -0.05
SEMA4D-208ENST00000422704 PRDM2Q13029 1718 aa14.76□□□□□ -0.05
SEMA4D-208ENST00000422704 SENP3-EIF4A1A0A087X0R7 540 aa14.75□□□□□ -0.05
SEMA4D-208ENST00000422704 NPM2Q86SE8 214 aaKnown RBP14.74□□□□□ -0.05
SEMA4D-208ENST00000422704 TOP2BQ02880 1626 aa14.74□□□□□ -0.05
SEMA4D-208ENST00000422704 BIVM-ERCC5R4GMW8 1640 aa14.74□□□□□ -0.05
SEMA4D-208ENST00000422704 MIER1Q8N108 512 aa14.73□□□□□ -0.05
SEMA4D-208ENST00000422704 FAM9BQ8IZU0 186 aa14.71□□□□□ -0.05
SEMA4D-208ENST00000422704 HNRNPUQ00839 825 aaKnown RBP eCLIP14.7□□□□□ -0.06
SEMA4D-208ENST00000422704 CHIC2Q9UKJ5 165 aa14.7□□□□□ -0.06
SEMA4D-208ENST00000422704 IRX6P78412 446 aaPredicted RBP14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms