RNA–Protein interactions for RNA: ENST00000419220.1

LINC02539-202, Transcript of long intergenic non-protein coding RNA 2539, humanhuman

TSL 2

Gene LINC02539, Length 703 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02539-202ENST00000419220 CLCN6P51797 869 aa11.96□□□□□ -0.49
LINC02539-202ENST00000419220 ZNF692Q9BU19 519 aaPredicted RBP11.93□□□□□ -0.5
LINC02539-202ENST00000419220 SSUH2Q9Y2M2 353 aa11.93□□□□□ -0.5
LINC02539-202ENST00000419220 TOP2AP11388 1531 aaKnown RBP11.91□□□□□ -0.5
LINC02539-202ENST00000419220 CHADLQ6NUI6 762 aa11.89□□□□□ -0.51
LINC02539-202ENST00000419220 SUPT5HO00267 1087 aaKnown RBP11.88□□□□□ -0.51
LINC02539-202ENST00000419220 PRR29P0C7W0 189 aa11.87□□□□□ -0.51
LINC02539-202ENST00000419220 LAMC3Q9Y6N6 1575 aa11.85□□□□□ -0.51
LINC02539-202ENST00000419220 POTEIP0CG38 1075 aa11.84□□□□□ -0.51
LINC02539-202ENST00000419220 CD44P16070 742 aaKnown RBP11.83□□□□□ -0.52
LINC02539-202ENST00000419220 PDS5BQ9NTI5 1447 aa11.83□□□□□ -0.52
LINC02539-202ENST00000419220 ERCC6Q03468 1493 aa11.83□□□□□ -0.52
LINC02539-202ENST00000419220 CADPSQ9ULU8 1353 aa11.82□□□□□ -0.52
LINC02539-202ENST00000419220 DCBLD2Q96PD2 775 aa11.79□□□□□ -0.52
LINC02539-202ENST00000419220 CCDC88BA6NC98 1476 aa11.76□□□□□ -0.53
LINC02539-202ENST00000419220 MKRN4PQ13434 485 aaPredicted RBP11.75□□□□□ -0.53
LINC02539-202ENST00000419220 FARP1Q9Y4F1 1045 aaPredicted RBP11.73□□□□□ -0.53
LINC02539-202ENST00000419220 CFTRP13569 1480 aa11.72□□□□□ -0.53
LINC02539-202ENST00000419220 NESP48681 1621 aa11.71□□□□□ -0.53
LINC02539-202ENST00000419220 PRDM2Q13029 1718 aa11.69□□□□□ -0.54
LINC02539-202ENST00000419220 CEP164Q9UPV0 1460 aa11.67□□□□□ -0.54
LINC02539-202ENST00000419220 FANCD2Q9BXW9 1451 aa11.65□□□□□ -0.54
LINC02539-202ENST00000419220 CUX2O14529 1486 aa11.64□□□□□ -0.55
LINC02539-202ENST00000419220 KIF21AQ7Z4S6 1674 aa11.63□□□□□ -0.55
LINC02539-202ENST00000419220 ZNF579Q8NAF0 562 aaKnown RBP11.63□□□□□ -0.55
LINC02539-202ENST00000419220 ABCC8Q09428 1581 aa11.62□□□□□ -0.55
LINC02539-202ENST00000419220 MRC2Q9UBG0 1479 aa11.61□□□□□ -0.55
LINC02539-202ENST00000419220 POTEMA6NI47 508 aa11.59□□□□□ -0.55
LINC02539-202ENST00000419220 OTUD5Q96G74 571 aa11.57□□□□□ -0.56
LINC02539-202ENST00000419220 PCDH10Q9P2E7 1040 aa11.57□□□□□ -0.56
LINC02539-202ENST00000419220 ZRANB1Q9UGI0 708 aa11.55□□□□□ -0.56
LINC02539-202ENST00000419220 THOC2Q8NI27 1593 aaKnown RBP11.54□□□□□ -0.56
LINC02539-202ENST00000419220 POTEGQ6S5H5 508 aa11.54□□□□□ -0.56
LINC02539-202ENST00000419220 WDR62O43379 1518 aa11.53□□□□□ -0.56
LINC02539-202ENST00000419220 FKBP8Q14318 412 aa11.48□□□□□ -0.57
LINC02539-202ENST00000419220 DNMBPQ6XZF7 1577 aa11.47□□□□□ -0.57
LINC02539-202ENST00000419220 GALR2O43603 387 aaPredicted RBP11.46□□□□□ -0.57
LINC02539-202ENST00000419220 URB2Q14146 1524 aaKnown RBP11.45□□□□□ -0.58
LINC02539-202ENST00000419220 TOPBP1Q92547 1522 aa11.45□□□□□ -0.58
LINC02539-202ENST00000419220 PAK3O75914 559 aaPredicted RBP11.44□□□□□ -0.58
LINC02539-202ENST00000419220 IFT140Q96RY7 1462 aa11.43□□□□□ -0.58
LINC02539-202ENST00000419220 POTEB2H3BUK9 544 aa11.42□□□□□ -0.58
LINC02539-202ENST00000419220 WRNQ14191 1432 aaPredicted RBP eCLIP11.4□□□□□ -0.58
LINC02539-202ENST00000419220 SOGA1O94964 1423 aa11.38□□□□□ -0.59
LINC02539-202ENST00000419220 STAG3Q9UJ98 1225 aa11.37□□□□□ -0.59
LINC02539-202ENST00000419220 MAMSTRQ6ZN01 415 aa11.35□□□□□ -0.59
LINC02539-202ENST00000419220 POLA1P09884 1462 aaPredicted RBP11.35□□□□□ -0.59
LINC02539-202ENST00000419220 WDR97A6NE52 1622 aa11.35□□□□□ -0.59
LINC02539-202ENST00000419220 CUX1P39880 1505 aa11.35□□□□□ -0.59
LINC02539-202ENST00000419220 FGD5Q6ZNL6 1462 aa11.34□□□□□ -0.59
LINC02539-202ENST00000419220 CREBZFQ9NS37 354 aa11.34□□□□□ -0.59
LINC02539-202ENST00000419220 TOP2BQ02880 1626 aa11.34□□□□□ -0.59
LINC02539-202ENST00000419220 BIVM-ERCC5R4GMW8 1640 aa11.32□□□□□ -0.6
LINC02539-202ENST00000419220 TRIM41Q8WV44 630 aa11.3□□□□□ -0.6
LINC02539-202ENST00000419220 SLC39A7Q92504 469 aa11.29□□□□□ -0.6
LINC02539-202ENST00000419220 TARBP1Q13395 1621 aaKnown RBP11.28□□□□□ -0.6
LINC02539-202ENST00000419220 C7P10643 843 aa11.28□□□□□ -0.6
LINC02539-202ENST00000419220 PHF12Q96QT6 1004 aa11.28□□□□□ -0.6
LINC02539-202ENST00000419220 METRNQ9UJH8 293 aa11.28□□□□□ -0.6
LINC02539-202ENST00000419220 RAD54L2Q9Y4B4 1467 aa11.27□□□□□ -0.6
LINC02539-202ENST00000419220 ABCA10Q8WWZ4 1543 aa11.26□□□□□ -0.61
LINC02539-202ENST00000419220 SYNJ1O43426 1573 aa11.26□□□□□ -0.61
LINC02539-202ENST00000419220 NPM1P06748 294 aaKnown RBP eCLIP11.26□□□□□ -0.61
LINC02539-202ENST00000419220 PELP1Q8IZL8 1130 aaKnown RBP11.25□□□□□ -0.61
LINC02539-202ENST00000419220 TDRD9Q8NDG6 1382 aaKnown RBP11.25□□□□□ -0.61
LINC02539-202ENST00000419220 GAPVD1Q14C86 1478 aa11.25□□□□□ -0.61
LINC02539-202ENST00000419220 EIF4G3O43432 1585 aaKnown RBP11.24□□□□□ -0.61
LINC02539-202ENST00000419220 AQRO60306 1485 aaKnown RBP eCLIP11.24□□□□□ -0.61
LINC02539-202ENST00000419220 GRIN2BQ13224 1484 aa11.24□□□□□ -0.61
LINC02539-202ENST00000419220 ZNF608Q9ULD9 1512 aaPredicted RBP11.24□□□□□ -0.61
LINC02539-202ENST00000419220 ASTLQ6HA08 431 aaPredicted RBP11.23□□□□□ -0.61
LINC02539-202ENST00000419220 CHMP7Q8WUX9 453 aaPredicted RBP11.23□□□□□ -0.61
LINC02539-202ENST00000419220 SCUBE2Q9NQ36 999 aa11.22□□□□□ -0.61
LINC02539-202ENST00000419220 KIF27Q86VH2 1401 aa11.21□□□□□ -0.61
LINC02539-202ENST00000419220 MAGI1Q96QZ7 1491 aaPredicted RBP11.2□□□□□ -0.62
LINC02539-202ENST00000419220 FAM163AQ96GL9 167 aaPredicted RBP11.18□□□□□ -0.62
LINC02539-202ENST00000419220 PBRM1Q86U86 1689 aa11.17□□□□□ -0.62
LINC02539-202ENST00000419220 ATMINO43313 823 aaPredicted RBP11.17□□□□□ -0.62
LINC02539-202ENST00000419220 DNAJC5Q9H3Z4 198 aa11.17□□□□□ -0.62
LINC02539-202ENST00000419220 ERICH3Q5RHP9 1530 aa11.17□□□□□ -0.62
LINC02539-202ENST00000419220 ABCA5Q8WWZ7 1642 aa11.16□□□□□ -0.62
LINC02539-202ENST00000419220 SYNJ2O15056 1496 aa11.14□□□□□ -0.63
LINC02539-202ENST00000419220 SNAPC4Q5SXM2 1469 aa11.14□□□□□ -0.63
LINC02539-202ENST00000419220 LCE2DQ5TA82 110 aaPredicted RBP11.14□□□□□ -0.63
LINC02539-202ENST00000419220 FHAD1B1AJZ9 1412 aa11.13□□□□□ -0.63
LINC02539-202ENST00000419220 POTEJP0CG39 1038 aa11.13□□□□□ -0.63
LINC02539-202ENST00000419220 MS4A3Q96HJ5 214 aa11.13□□□□□ -0.63
LINC02539-202ENST00000419220 SPDYE4A6NLX3 237 aa11.11□□□□□ -0.63
LINC02539-202ENST00000419220 CUL7Q14999 1698 aa11.11□□□□□ -0.63
LINC02539-202ENST00000419220 EEA1Q15075 1411 aa11.1□□□□□ -0.63
LINC02539-202ENST00000419220 CHD1O14646 1710 aa11.09□□□□□ -0.63
LINC02539-202ENST00000419220 FAM9AQ8IZU1 332 aaPredicted RBP11.08□□□□□ -0.64
LINC02539-202ENST00000419220 IGF1RP08069 1367 aa11.07□□□□□ -0.64
LINC02539-202ENST00000419220 CARMIL1Q5VZK9 1371 aa11.07□□□□□ -0.64
LINC02539-202ENST00000419220 ADAMTS12P58397 1594 aa11.06□□□□□ -0.64
LINC02539-202ENST00000419220 GRIN2AQ12879 1464 aa11.06□□□□□ -0.64
LINC02539-202ENST00000419220 RTN4Q9NQC3 1192 aaKnown RBP11.05□□□□□ -0.64
LINC02539-202ENST00000419220 MNX1P50219 401 aaPredicted RBP11.04□□□□□ -0.64
LINC02539-202ENST00000419220 CDAN1Q8IWY9 1227 aa11.02□□□□□ -0.65
LINC02539-202ENST00000419220 RAPGEF2Q9Y4G8 1499 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms