RNA–Protein interactions for RNA: ENST00000419220.1

LINC02539-202, Transcript of long intergenic non-protein coding RNA 2539, humanhuman

TSL 2

Gene LINC02539, Length 703 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02539-202ENST00000419220 AEBP2Q6ZN18 517 aaPredicted RBP23.1■■□□□ 1.29
LINC02539-202ENST00000419220 CHIC1Q5VXU3 224 aa21.79■■□□□ 1.08
LINC02539-202ENST00000419220 SENP3Q9H4L4 574 aaPredicted RBP20.01■□□□□ 0.79
LINC02539-202ENST00000419220 PHF23Q9BUL5 403 aaPredicted RBP19.55■□□□□ 0.72
LINC02539-202ENST00000419220 FOXD1Q16676 465 aa18.59■□□□□ 0.57
LINC02539-202ENST00000419220 POTEDQ86YR6 584 aa18.36■□□□□ 0.53
LINC02539-202ENST00000419220 MSH5O43196 834 aa17.81■□□□□ 0.44
LINC02539-202ENST00000419220 PIAS4Q8N2W9 510 aaPredicted RBP17.29■□□□□ 0.36
LINC02539-202ENST00000419220 PLPPR3Q6T4P5 718 aa16.89■□□□□ 0.29
LINC02539-202ENST00000419220 PPP6R1Q9UPN7 881 aa16.81■□□□□ 0.28
LINC02539-202ENST00000419220 ADRA2BP18089 450 aa16.75■□□□□ 0.27
LINC02539-202ENST00000419220 NISCHQ9Y2I1 1504 aa15.77■□□□□ 0.11
LINC02539-202ENST00000419220 DMRT2Q9Y5R5 561 aa15.71■□□□□ 0.11
LINC02539-202ENST00000419220 CACNB1Q02641 598 aaPredicted RBP15.63■□□□□ 0.09
LINC02539-202ENST00000419220 SCAF1Q9H7N4 1312 aaKnown RBP15.54■□□□□ 0.08
LINC02539-202ENST00000419220 MAPK8IP2Q13387 824 aaPredicted RBP15.54■□□□□ 0.08
LINC02539-202ENST00000419220 DCAF8L1A6NGE4 600 aa15.1■□□□□ 0.01
LINC02539-202ENST00000419220 RNF39Q9H2S5 420 aa15.05■□□□□ -0
LINC02539-202ENST00000419220 HOXD11P31277 338 aaPredicted RBP14.87□□□□□ -0.03
LINC02539-202ENST00000419220 C1QBPQ07021 282 aaKnown RBP14.87□□□□□ -0.03
LINC02539-202ENST00000419220 PPP4R3CPQ6ZMV5 832 aa14.64□□□□□ -0.07
LINC02539-202ENST00000419220 RNF216Q9NWF9 866 aaPredicted RBP14.61□□□□□ -0.07
LINC02539-202ENST00000419220 DNAJC5BQ9UF47 199 aa14.6□□□□□ -0.07
LINC02539-202ENST00000419220 CNKSR2Q8WXI2 1034 aa14.58□□□□□ -0.08
LINC02539-202ENST00000419220 POTEHQ6S545 545 aa14.3□□□□□ -0.12
LINC02539-202ENST00000419220 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.2□□□□□ -0.14
LINC02539-202ENST00000419220 CCDC180Q9P1Z9 1646 aa14.04□□□□□ -0.16
LINC02539-202ENST00000419220 NCBP3Q53F19 620 aaKnown RBP14.01□□□□□ -0.17
LINC02539-202ENST00000419220 DSG3P32926 999 aa13.85□□□□□ -0.19
LINC02539-202ENST00000419220 CAPN15O75808 1086 aa13.82□□□□□ -0.2
LINC02539-202ENST00000419220 U3KPZ7 1027 aaPredicted RBP13.76□□□□□ -0.21
LINC02539-202ENST00000419220 SPINK5Q9NQ38 1064 aaPredicted RBP13.71□□□□□ -0.21
LINC02539-202ENST00000419220 NPM3O75607 178 aaKnown RBP13.66□□□□□ -0.22
LINC02539-202ENST00000419220 KCNA4P22459 653 aa13.59□□□□□ -0.23
LINC02539-202ENST00000419220 ABCC9O60706 1549 aa13.59□□□□□ -0.23
LINC02539-202ENST00000419220 APLP2Q06481 763 aa13.53□□□□□ -0.24
LINC02539-202ENST00000419220 ZNF219Q9P2Y4 722 aaPredicted RBP13.46□□□□□ -0.25
LINC02539-202ENST00000419220 TRHP20396 242 aaPredicted RBP13.41□□□□□ -0.26
LINC02539-202ENST00000419220 RBM42Q9BTD8 480 aaKnown RBP13.38□□□□□ -0.27
LINC02539-202ENST00000419220 ABCB7O75027 752 aa13.37□□□□□ -0.27
LINC02539-202ENST00000419220 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.33□□□□□ -0.28
LINC02539-202ENST00000419220 HNRNPUL2Q1KMD3 747 aaKnown RBP13.33□□□□□ -0.28
LINC02539-202ENST00000419220 DCAF8L2P0C7V8 631 aa13.29□□□□□ -0.28
LINC02539-202ENST00000419220 CHRDL2Q6WN34 429 aa13.25□□□□□ -0.29
LINC02539-202ENST00000419220 RB1CC1Q8TDY2 1594 aa13.21□□□□□ -0.29
LINC02539-202ENST00000419220 NACADO15069 1562 aa13.2□□□□□ -0.3
LINC02539-202ENST00000419220 SLC4A2P04920 1241 aa13.18□□□□□ -0.3
LINC02539-202ENST00000419220 SAMD1Q6SPF0 538 aaPredicted RBP13.17□□□□□ -0.3
LINC02539-202ENST00000419220 MYO15BQ96JP2 1530 aa13.14□□□□□ -0.31
LINC02539-202ENST00000419220 ZCCHC6Q5VYS8 1495 aaKnown RBP13.12□□□□□ -0.31
LINC02539-202ENST00000419220 SP7Q8TDD2 431 aaPredicted RBP13.11□□□□□ -0.31
LINC02539-202ENST00000419220 DCAF1Q9Y4B6 1507 aa13.1□□□□□ -0.31
LINC02539-202ENST00000419220 EHMT2Q96KQ7 1210 aa13.08□□□□□ -0.32
LINC02539-202ENST00000419220 SLC4A1APQ9BWU0 796 aaKnown RBP12.97□□□□□ -0.33
LINC02539-202ENST00000419220 POLA2Q14181 598 aa12.9□□□□□ -0.34
LINC02539-202ENST00000419220 AKT1S1Q96B36 256 aa12.88□□□□□ -0.35
LINC02539-202ENST00000419220 UNC13AQ9UPW8 1703 aa12.77□□□□□ -0.36
LINC02539-202ENST00000419220 PIP4P2Q8N4L2 257 aa12.75□□□□□ -0.37
LINC02539-202ENST00000419220 SCRIBQ14160 1630 aa12.74□□□□□ -0.37
LINC02539-202ENST00000419220 HAX1O00165 279 aa12.74□□□□□ -0.37
LINC02539-202ENST00000419220 MYCNP04198 464 aaPredicted RBP12.74□□□□□ -0.37
LINC02539-202ENST00000419220 ZBTB12Q9Y330 459 aaPredicted RBP12.74□□□□□ -0.37
LINC02539-202ENST00000419220 PABPN1Q86U42 306 aaKnown RBP eCLIP12.72□□□□□ -0.37
LINC02539-202ENST00000419220 SHROOM4Q9ULL8 1493 aa12.71□□□□□ -0.38
LINC02539-202ENST00000419220 REM2Q8IYK8 340 aaPredicted RBP12.69□□□□□ -0.38
LINC02539-202ENST00000419220 CSRNP3Q8WYN3 585 aa12.68□□□□□ -0.38
LINC02539-202ENST00000419220 BICRAQ9NZM4 1560 aa12.63□□□□□ -0.39
LINC02539-202ENST00000419220 FXR2P51116 673 aaKnown RBP eCLIP12.59□□□□□ -0.39
LINC02539-202ENST00000419220 PITPNM1O00562 1244 aa12.55□□□□□ -0.4
LINC02539-202ENST00000419220 ZBTB22O15209 634 aa12.53□□□□□ -0.4
LINC02539-202ENST00000419220 OSCARQ8IYS5 282 aa12.5□□□□□ -0.41
LINC02539-202ENST00000419220 EVX2Q03828 476 aa12.38□□□□□ -0.43
LINC02539-202ENST00000419220 EIF4G1Q04637 1599 aaKnown RBP12.37□□□□□ -0.43
LINC02539-202ENST00000419220 FOXD4L1Q9NU39 408 aa12.34□□□□□ -0.43
LINC02539-202ENST00000419220 ATF5Q9Y2D1 282 aaPredicted RBP12.32□□□□□ -0.44
LINC02539-202ENST00000419220 CC2D2AQ9P2K1 1620 aa12.3□□□□□ -0.44
LINC02539-202ENST00000419220 BAZ1AQ9NRL2 1556 aaPredicted RBP12.28□□□□□ -0.44
LINC02539-202ENST00000419220 LHX8Q68G74 356 aa12.28□□□□□ -0.44
LINC02539-202ENST00000419220 PRKAR2AP13861 404 aaKnown RBP12.24□□□□□ -0.45
LINC02539-202ENST00000419220 CECR2Q9BXF3 1484 aa12.24□□□□□ -0.45
LINC02539-202ENST00000419220 SPDYE2BA6NHP3 402 aa12.23□□□□□ -0.45
LINC02539-202ENST00000419220 SPDYE6P0CI01 402 aa12.23□□□□□ -0.45
LINC02539-202ENST00000419220 SPDYE2Q495Y8 402 aa12.23□□□□□ -0.45
LINC02539-202ENST00000419220 SMARCA4P51532 1647 aa12.22□□□□□ -0.45
LINC02539-202ENST00000419220 C19orf67A6NJJ6 358 aa12.21□□□□□ -0.45
LINC02539-202ENST00000419220 SMARCA2P51531 1590 aa12.21□□□□□ -0.46
LINC02539-202ENST00000419220 SPDYE1Q8NFV5 336 aaPredicted RBP12.19□□□□□ -0.46
LINC02539-202ENST00000419220 GABBR2O75899 941 aa12.18□□□□□ -0.46
LINC02539-202ENST00000419220 NCAPD3P42695 1498 aa12.14□□□□□ -0.47
LINC02539-202ENST00000419220 CLEC11AQ9Y240 323 aa12.13□□□□□ -0.47
LINC02539-202ENST00000419220 ATAD2BQ9ULI0 1458 aa12.12□□□□□ -0.47
LINC02539-202ENST00000419220 FBLN2P98095 1184 aa12.11□□□□□ -0.47
LINC02539-202ENST00000419220 PEG3Q9GZU2 1588 aa12.09□□□□□ -0.47
LINC02539-202ENST00000419220 BAZ1BQ9UIG0 1483 aaKnown RBP12.09□□□□□ -0.47
LINC02539-202ENST00000419220 HMGXB3Q12766 1538 aa12.09□□□□□ -0.47
LINC02539-202ENST00000419220 MROH2BQ7Z745 1585 aa12.09□□□□□ -0.47
LINC02539-202ENST00000419220 PLSCR2Q9NRY7 297 aa12.04□□□□□ -0.48
LINC02539-202ENST00000419220 RSF1Q96T23 1441 aaPredicted RBP12.02□□□□□ -0.49
LINC02539-202ENST00000419220 WIZO95785 1651 aa11.99□□□□□ -0.49
LINC02539-202ENST00000419220 ATXN8OSP0DMR3 200 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms