RNA–Protein interactions for RNA: ENST00000418188.1

CSPG4P3Y-201, Transcript of CSPG4 pseudogene 3 Y-linked, humanhuman

BASIC

Gene CSPG4P3Y, Length 3,724 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P3Y-201ENST00000418188 TIAM1Q13009 1591 aa16.84■□□□□ 0.29
CSPG4P3Y-201ENST00000418188 LRRC9Q6ZRR7 1453 aa16.83■□□□□ 0.29
CSPG4P3Y-201ENST00000418188 SETD5Q9C0A6 1442 aa16.83■□□□□ 0.28
CSPG4P3Y-201ENST00000418188 MAP3K1Q13233 1512 aa16.82■□□□□ 0.28
CSPG4P3Y-201ENST00000418188 RAD54L2Q9Y4B4 1467 aa16.81■□□□□ 0.28
CSPG4P3Y-201ENST00000418188 FHOD3Q2V2M9 1422 aa16.79■□□□□ 0.28
CSPG4P3Y-201ENST00000418188 PHLDB1Q86UU1 1377 aa16.79■□□□□ 0.28
CSPG4P3Y-201ENST00000418188 DNMBPQ6XZF7 1577 aa16.77■□□□□ 0.27
CSPG4P3Y-201ENST00000418188 POLA1P09884 1462 aaPredicted RBP16.76■□□□□ 0.27
CSPG4P3Y-201ENST00000418188 TOPBP1Q92547 1522 aa16.76■□□□□ 0.27
CSPG4P3Y-201ENST00000418188 ABCA10Q8WWZ4 1543 aa16.75■□□□□ 0.27
CSPG4P3Y-201ENST00000418188 MTUS2Q5JR59 1369 aa16.74■□□□□ 0.27
CSPG4P3Y-201ENST00000418188 NESP48681 1621 aa16.73■□□□□ 0.27
CSPG4P3Y-201ENST00000418188 FMN1Q68DA7 1419 aa16.72■□□□□ 0.27
CSPG4P3Y-201ENST00000418188 SIN3AQ96ST3 1273 aa16.72■□□□□ 0.27
CSPG4P3Y-201ENST00000418188 EFCAB5A4FU69 1503 aa16.7■□□□□ 0.26
CSPG4P3Y-201ENST00000418188 PCF11O94913 1555 aaKnown RBP16.7■□□□□ 0.26
CSPG4P3Y-201ENST00000418188 FYCO1Q9BQS8 1478 aa16.7■□□□□ 0.26
CSPG4P3Y-201ENST00000418188 TDRD9Q8NDG6 1382 aaKnown RBP16.69■□□□□ 0.26
CSPG4P3Y-201ENST00000418188 CASKIN1Q8WXD9 1431 aa16.69■□□□□ 0.26
CSPG4P3Y-201ENST00000418188 TIMELESSQ9UNS1 1208 aa16.67■□□□□ 0.26
CSPG4P3Y-201ENST00000418188 DDX10Q13206 875 aaKnown RBP16.65■□□□□ 0.26
CSPG4P3Y-201ENST00000418188 PDS5BQ9NTI5 1447 aa16.65■□□□□ 0.26
CSPG4P3Y-201ENST00000418188 CUL7Q14999 1698 aa16.65■□□□□ 0.26
CSPG4P3Y-201ENST00000418188 MAPKBP1O60336 1514 aa16.63■□□□□ 0.25
CSPG4P3Y-201ENST00000418188 AQRO60306 1485 aaKnown RBP eCLIP16.63■□□□□ 0.25
CSPG4P3Y-201ENST00000418188 TONSLQ96HA7 1378 aa16.62■□□□□ 0.25
CSPG4P3Y-201ENST00000418188 CFAP43Q8NDM7 1665 aa16.61■□□□□ 0.25
CSPG4P3Y-201ENST00000418188 GAPVD1Q14C86 1478 aa16.61■□□□□ 0.25
CSPG4P3Y-201ENST00000418188 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.6■□□□□ 0.25
CSPG4P3Y-201ENST00000418188 FGD6Q6ZV73 1430 aa16.6■□□□□ 0.25
CSPG4P3Y-201ENST00000418188 LAMC3Q9Y6N6 1575 aa16.59■□□□□ 0.25
CSPG4P3Y-201ENST00000418188 URB2Q14146 1524 aaKnown RBP16.58■□□□□ 0.24
CSPG4P3Y-201ENST00000418188 PPP1R15AO75807 674 aaPredicted RBP16.56■□□□□ 0.24
CSPG4P3Y-201ENST00000418188 HIRIP3Q9BW71 556 aaPredicted RBP16.56■□□□□ 0.24
CSPG4P3Y-201ENST00000418188 ANP32CO43423 234 aa16.55■□□□□ 0.24
CSPG4P3Y-201ENST00000418188 CTTNBP2Q8WZ74 1663 aa16.54■□□□□ 0.24
CSPG4P3Y-201ENST00000418188 WDR97A6NE52 1622 aa16.53■□□□□ 0.24
CSPG4P3Y-201ENST00000418188 TRIM52Q96A61 297 aa16.52■□□□□ 0.24
CSPG4P3Y-201ENST00000418188 SUPT16HQ9Y5B9 1047 aaKnown RBP16.52■□□□□ 0.23
CSPG4P3Y-201ENST00000418188 CCDC18Q5T9S5 1454 aa16.52■□□□□ 0.23
CSPG4P3Y-201ENST00000418188 CHIC2Q9UKJ5 165 aa16.5■□□□□ 0.23
CSPG4P3Y-201ENST00000418188 KCNH8Q96L42 1107 aa16.5■□□□□ 0.23
CSPG4P3Y-201ENST00000418188 MYOM3Q5VTT5 1437 aa16.5■□□□□ 0.23
CSPG4P3Y-201ENST00000418188 NCOA2Q15596 1464 aa16.49■□□□□ 0.23
CSPG4P3Y-201ENST00000418188 SNAPC4Q5SXM2 1469 aa16.49■□□□□ 0.23
CSPG4P3Y-201ENST00000418188 ARID3CA6NKF2 412 aa16.49■□□□□ 0.23
CSPG4P3Y-201ENST00000418188 RRP7BPQ9NSQ0 103 aa16.48■□□□□ 0.23
CSPG4P3Y-201ENST00000418188 HFM1A2PYH4 1435 aa16.47■□□□□ 0.23
CSPG4P3Y-201ENST00000418188 UACAQ9BZF9 1416 aa16.47■□□□□ 0.23
CSPG4P3Y-201ENST00000418188 NEFLP07196 543 aa16.46■□□□□ 0.23
CSPG4P3Y-201ENST00000418188 DNAJC5BQ9UF47 199 aa16.45■□□□□ 0.22
CSPG4P3Y-201ENST00000418188 MYT1Q01538 1121 aa16.44■□□□□ 0.22
CSPG4P3Y-201ENST00000418188 ABCA5Q8WWZ7 1642 aa16.44■□□□□ 0.22
CSPG4P3Y-201ENST00000418188 EHBP1L1Q8N3D4 1523 aa16.43■□□□□ 0.22
CSPG4P3Y-201ENST00000418188 GRIN2BQ13224 1484 aa16.42■□□□□ 0.22
CSPG4P3Y-201ENST00000418188 NAIPQ13075 1403 aa16.41■□□□□ 0.22
CSPG4P3Y-201ENST00000418188 PTPRKQ15262 1439 aa16.41■□□□□ 0.22
CSPG4P3Y-201ENST00000418188 SAMD9Q5K651 1589 aa16.41■□□□□ 0.22
CSPG4P3Y-201ENST00000418188 SUPT6HQ7KZ85 1726 aaKnown RBP16.41■□□□□ 0.22
CSPG4P3Y-201ENST00000418188 CCER2I3L3R5 266 aa16.41■□□□□ 0.22
CSPG4P3Y-201ENST00000418188 THOC2Q8NI27 1593 aaKnown RBP16.4■□□□□ 0.22
CSPG4P3Y-201ENST00000418188 CDK11AQ9UQ88 783 aaPredicted RBP16.37■□□□□ 0.21
CSPG4P3Y-201ENST00000418188 PTPN23Q9H3S7 1636 aa16.37■□□□□ 0.21
CSPG4P3Y-201ENST00000418188 BCANQ96GW7 911 aa16.37■□□□□ 0.21
CSPG4P3Y-201ENST00000418188 FKBP8Q14318 412 aa16.36■□□□□ 0.21
CSPG4P3Y-201ENST00000418188 HECW1Q76N89 1606 aa16.33■□□□□ 0.2
CSPG4P3Y-201ENST00000418188 UGGT2Q9NYU1 1516 aa16.32■□□□□ 0.2
CSPG4P3Y-201ENST00000418188 IQGAP2Q13576 1575 aa16.32■□□□□ 0.2
CSPG4P3Y-201ENST00000418188 KIF21AQ7Z4S6 1674 aa16.32■□□□□ 0.2
CSPG4P3Y-201ENST00000418188 EIF4G2P78344 907 aaKnown RBP eCLIP16.31■□□□□ 0.2
CSPG4P3Y-201ENST00000418188 EPRSP07814 1512 aaKnown RBP16.31■□□□□ 0.2
CSPG4P3Y-201ENST00000418188 MPHOSPH9Q99550 1183 aa16.31■□□□□ 0.2
CSPG4P3Y-201ENST00000418188 MRC2Q9UBG0 1479 aa16.29■□□□□ 0.2
CSPG4P3Y-201ENST00000418188 TARBP1Q13395 1621 aaKnown RBP16.29■□□□□ 0.2
CSPG4P3Y-201ENST00000418188 MIA2Q96PC5 1412 aa16.29■□□□□ 0.2
CSPG4P3Y-201ENST00000418188 HSPA5P11021 654 aaKnown RBP16.27■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 FBLN2P98095 1184 aa16.27■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 CDK13Q14004 1512 aaKnown RBP16.27■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 SLC4A1APQ9BWU0 796 aaKnown RBP16.26■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 MAGI3Q5TCQ9 1506 aa16.25■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 FOXD1Q16676 465 aa16.25■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 HNRNPUQ00839 825 aaKnown RBP eCLIP16.25■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 CHMP7Q8WUX9 453 aaPredicted RBP16.24■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 TCOF1Q13428 1488 aaKnown RBP16.24■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 L3MBTL2Q969R5 705 aa16.23■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 LRRIQ1Q96JM4 1722 aa16.23■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 ADAMTS12P58397 1594 aa16.23■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 AKNAQ7Z591 1439 aa16.23■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 ZNF777Q9ULD5 760 aaPredicted RBP16.23■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 ARHGEF11O15085 1522 aa16.23■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 IFT140Q96RY7 1462 aa16.22■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 PBRM1Q86U86 1689 aa16.22■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 CFDP1Q9UEE9 299 aaPredicted RBP16.22■□□□□ 0.19
CSPG4P3Y-201ENST00000418188 TSHZ2Q9NRE2 1034 aa16.2■□□□□ 0.18
CSPG4P3Y-201ENST00000418188 KIAA0586Q9BVV6 1533 aa16.19■□□□□ 0.18
CSPG4P3Y-201ENST00000418188 WDR62O43379 1518 aa16.18■□□□□ 0.18
CSPG4P3Y-201ENST00000418188 ZNF644Q9H582 1327 aaPredicted RBP16.18■□□□□ 0.18
CSPG4P3Y-201ENST00000418188 ZNF608Q9ULD9 1512 aaPredicted RBP16.18■□□□□ 0.18
CSPG4P3Y-201ENST00000418188 WASHC2AQ641Q2 1341 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms