RNA–Protein interactions for RNA: ENST00000415541.5

SIK3-203, Transcript of SIK family kinase 3, humanhuman

TSL 1 (best)

Gene SIK3, Length 3,816 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIK3-203ENST00000415541 FANCIQ9NVI1 1328 aa11□□□□□ -0.65
SIK3-203ENST00000415541 FANCD2Q9BXW9 1451 aa11□□□□□ -0.65
SIK3-203ENST00000415541 NESP48681 1621 aa10.99□□□□□ -0.65
SIK3-203ENST00000415541 RAPGEF2Q9Y4G8 1499 aa10.97□□□□□ -0.65
SIK3-203ENST00000415541 SYNJ1O43426 1573 aa10.97□□□□□ -0.65
SIK3-203ENST00000415541 CFTRP13569 1480 aa10.95□□□□□ -0.66
SIK3-203ENST00000415541 EIF5BO60841 1220 aaKnown RBP10.95□□□□□ -0.66
SIK3-203ENST00000415541 CDK11AQ9UQ88 783 aaPredicted RBP10.95□□□□□ -0.66
SIK3-203ENST00000415541 HMGXB3Q12766 1538 aa10.94□□□□□ -0.66
SIK3-203ENST00000415541 MSH5O43196 834 aa10.94□□□□□ -0.66
SIK3-203ENST00000415541 SALL2Q9Y467 1007 aaPredicted RBP10.93□□□□□ -0.66
SIK3-203ENST00000415541 KIF21BO75037 1637 aa10.92□□□□□ -0.66
SIK3-203ENST00000415541 RAD54L2Q9Y4B4 1467 aa10.91□□□□□ -0.66
SIK3-203ENST00000415541 FGD5Q6ZNL6 1462 aa10.9□□□□□ -0.66
SIK3-203ENST00000415541 RTL5Q5HYW3 569 aaPredicted RBP10.9□□□□□ -0.66
SIK3-203ENST00000415541 ZNF777Q9ULD5 760 aaPredicted RBP10.9□□□□□ -0.67
SIK3-203ENST00000415541 TRIM52Q96A61 297 aa10.89□□□□□ -0.67
SIK3-203ENST00000415541 KANK4Q5T7N3 995 aaPredicted RBP10.89□□□□□ -0.67
SIK3-203ENST00000415541 SLC24A1O60721 1099 aa10.88□□□□□ -0.67
SIK3-203ENST00000415541 IGF1RP08069 1367 aa10.88□□□□□ -0.67
SIK3-203ENST00000415541 CCDC136Q96JN2 1154 aa10.86□□□□□ -0.67
SIK3-203ENST00000415541 MTUS2Q5JR59 1369 aa10.86□□□□□ -0.67
SIK3-203ENST00000415541 CHIC2Q9UKJ5 165 aa10.85□□□□□ -0.67
SIK3-203ENST00000415541 CUX1P39880 1505 aa10.85□□□□□ -0.67
SIK3-203ENST00000415541 VPS8Q8N3P4 1428 aa10.85□□□□□ -0.67
SIK3-203ENST00000415541 TOP2BQ02880 1626 aa10.8□□□□□ -0.68
SIK3-203ENST00000415541 PKNOX2Q96KN3 472 aa10.8□□□□□ -0.68
SIK3-203ENST00000415541 NBR1Q14596 966 aa10.79□□□□□ -0.68
SIK3-203ENST00000415541 GLIPR1L2Q4G1C9 344 aa10.79□□□□□ -0.68
SIK3-203ENST00000415541 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.78□□□□□ -0.68
SIK3-203ENST00000415541 NOP58Q9Y2X3 529 aaKnown RBP10.78□□□□□ -0.68
SIK3-203ENST00000415541 AQRO60306 1485 aaKnown RBP eCLIP10.78□□□□□ -0.686e-6■■■■□ 25.1
SIK3-203ENST00000415541 BIVM-ERCC5R4GMW8 1640 aa10.78□□□□□ -0.68
SIK3-203ENST00000415541 FHOD3Q2V2M9 1422 aa10.78□□□□□ -0.68
SIK3-203ENST00000415541 TOPBP1Q92547 1522 aa10.76□□□□□ -0.69
SIK3-203ENST00000415541 GAPVD1Q14C86 1478 aa10.75□□□□□ -0.69
SIK3-203ENST00000415541 POLA1P09884 1462 aaPredicted RBP10.75□□□□□ -0.69
SIK3-203ENST00000415541 RRP7BPQ9NSQ0 103 aa10.75□□□□□ -0.69
SIK3-203ENST00000415541 KCNH8Q96L42 1107 aa10.74□□□□□ -0.69
SIK3-203ENST00000415541 POLR3GLQ9BT43 218 aa10.74□□□□□ -0.69
SIK3-203ENST00000415541 FHAD1B1AJZ9 1412 aa10.74□□□□□ -0.69
SIK3-203ENST00000415541 CNGB1Q14028 1251 aaPredicted RBP10.73□□□□□ -0.69
SIK3-203ENST00000415541 RTN4Q9NQC3 1192 aaKnown RBP10.73□□□□□ -0.69
SIK3-203ENST00000415541 DAXXQ9UER7 740 aaPredicted RBP10.73□□□□□ -0.69
SIK3-203ENST00000415541 PRXQ9BXM0 1461 aa10.72□□□□□ -0.69
SIK3-203ENST00000415541 PLEKHD1A6NEE1 506 aa10.71□□□□□ -0.69
SIK3-203ENST00000415541 ERICH3Q5RHP9 1530 aa10.71□□□□□ -0.69
SIK3-203ENST00000415541 ARAP1Q96P48 1450 aa10.71□□□□□ -0.69
SIK3-203ENST00000415541 ZNF326Q5BKZ1 582 aaKnown RBP10.7□□□□□ -0.7
SIK3-203ENST00000415541 CCNB3Q8WWL7 1395 aa10.7□□□□□ -0.7
SIK3-203ENST00000415541 IL27Q8NEV9 243 aa10.7□□□□□ -0.7
SIK3-203ENST00000415541 JPH4Q96JJ6 628 aa10.69□□□□□ -0.7
SIK3-203ENST00000415541 ANP32AP39687 249 aaKnown RBP10.68□□□□□ -0.7
SIK3-203ENST00000415541 CFDP1Q9UEE9 299 aaPredicted RBP10.67□□□□□ -0.7
SIK3-203ENST00000415541 URB2Q14146 1524 aaKnown RBP10.66□□□□□ -0.7
SIK3-203ENST00000415541 ZBTB47Q9UFB7 747 aaPredicted RBP10.66□□□□□ -0.7
SIK3-203ENST00000415541 DNMBPQ6XZF7 1577 aa10.66□□□□□ -0.7
SIK3-203ENST00000415541 NPM1P06748 294 aaKnown RBP eCLIP10.65□□□□□ -0.7
SIK3-203ENST00000415541 LAMC3Q9Y6N6 1575 aa10.65□□□□□ -0.7
SIK3-203ENST00000415541 FMN1Q68DA7 1419 aa10.65□□□□□ -0.7
SIK3-203ENST00000415541 MRC2Q9UBG0 1479 aa10.65□□□□□ -0.71
SIK3-203ENST00000415541 TSPY4P0CV99 314 aa10.63□□□□□ -0.71
SIK3-203ENST00000415541 TSPY10P0CW01 314 aa10.63□□□□□ -0.71
SIK3-203ENST00000415541 PPP4R2Q9NY27 417 aa10.63□□□□□ -0.71
SIK3-203ENST00000415541 ARHGAP35Q9NRY4 1499 aa10.63□□□□□ -0.71
SIK3-203ENST00000415541 RSPH6AQ9H0K4 717 aa10.63□□□□□ -0.71
SIK3-203ENST00000415541 PODXL2Q9NZ53 605 aa10.63□□□□□ -0.71
SIK3-203ENST00000415541 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.63□□□□□ -0.711e-7■■□□□ 12.5
SIK3-203ENST00000415541 SIN3AQ96ST3 1273 aa10.62□□□□□ -0.71
SIK3-203ENST00000415541 DHX57Q6P158 1386 aaKnown RBP10.62□□□□□ -0.71
SIK3-203ENST00000415541 CCER2I3L3R5 266 aa10.62□□□□□ -0.71
SIK3-203ENST00000415541 HIRIP3Q9BW71 556 aaPredicted RBP10.62□□□□□ -0.71
SIK3-203ENST00000415541 ANP32CO43423 234 aa10.61□□□□□ -0.71
SIK3-203ENST00000415541 USP35Q9P2H5 1018 aa10.61□□□□□ -0.71
SIK3-203ENST00000415541 ABCA10Q8WWZ4 1543 aa10.6□□□□□ -0.71
SIK3-203ENST00000415541 RRBP1Q9P2E9 1410 aaKnown RBP10.6□□□□□ -0.71
SIK3-203ENST00000415541 GRIN2BQ13224 1484 aa10.59□□□□□ -0.71
SIK3-203ENST00000415541 CARMIL2Q6F5E8 1435 aa10.59□□□□□ -0.71
SIK3-203ENST00000415541 IPO9Q96P70 1041 aaKnown RBP10.59□□□□□ -0.71
SIK3-203ENST00000415541 TONSLQ96HA7 1378 aa10.59□□□□□ -0.71
SIK3-203ENST00000415541 C11orf95C9JLR9 678 aaPredicted RBP10.58□□□□□ -0.72
SIK3-203ENST00000415541 SLC4A1APQ9BWU0 796 aaKnown RBP10.57□□□□□ -0.72
SIK3-203ENST00000415541 ZNF608Q9ULD9 1512 aaPredicted RBP10.57□□□□□ -0.72
SIK3-203ENST00000415541 PAK3O75914 559 aaPredicted RBP10.56□□□□□ -0.72
SIK3-203ENST00000415541 PRDM2Q13029 1718 aa10.56□□□□□ -0.72
SIK3-203ENST00000415541 IFT140Q96RY7 1462 aa10.55□□□□□ -0.72
SIK3-203ENST00000415541 DDX10Q13206 875 aaKnown RBP10.55□□□□□ -0.72
SIK3-203ENST00000415541 RAB3GAP2Q9H2M9 1393 aa10.54□□□□□ -0.72
SIK3-203ENST00000415541 PPM1GO15355 546 aaPredicted RBP10.53□□□□□ -0.72
SIK3-203ENST00000415541 NEFMP07197 916 aa10.53□□□□□ -0.72
SIK3-203ENST00000415541 SNAPC4Q5SXM2 1469 aa10.53□□□□□ -0.72
SIK3-203ENST00000415541 PHLDB1Q86UU1 1377 aa10.53□□□□□ -0.72
SIK3-203ENST00000415541 IRX6P78412 446 aaPredicted RBP10.52□□□□□ -0.72
SIK3-203ENST00000415541 FOXD1Q16676 465 aa10.52□□□□□ -0.72
SIK3-203ENST00000415541 KDM2AQ9Y2K7 1162 aa10.52□□□□□ -0.73
SIK3-203ENST00000415541 SETD5Q9C0A6 1442 aa10.52□□□□□ -0.73
SIK3-203ENST00000415541 WASHC2AQ641Q2 1341 aa10.51□□□□□ -0.73
SIK3-203ENST00000415541 PTPRGP23470 1445 aa10.5□□□□□ -0.73
SIK3-203ENST00000415541 VSIG10Q8N0Z9 540 aa10.5□□□□□ -0.73
SIK3-203ENST00000415541 ZNF644Q9H582 1327 aaPredicted RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms