RNA–Protein interactions for RNA: ENST00000415541.5

SIK3-203, Transcript of SIK family kinase 3, humanhuman

TSL 1 (best)

Gene SIK3, Length 3,816 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIK3-203ENST00000415541 NISCHQ9Y2I1 1504 aa14.98□□□□□ -0.01
SIK3-203ENST00000415541 DCAF8L2P0C7V8 631 aa13.82□□□□□ -0.2
SIK3-203ENST00000415541 PELP1Q8IZL8 1130 aaKnown RBP13.51□□□□□ -0.25
SIK3-203ENST00000415541 SHROOM4Q9ULL8 1493 aa13.35□□□□□ -0.27
SIK3-203ENST00000415541 MYT1Q01538 1121 aa13.24□□□□□ -0.29
SIK3-203ENST00000415541 SUPT5HO00267 1087 aaKnown RBP13.14□□□□□ -0.31
SIK3-203ENST00000415541 HRCP23327 699 aa13.01□□□□□ -0.33
SIK3-203ENST00000415541 ABCC9O60706 1549 aa12.68□□□□□ -0.38
SIK3-203ENST00000415541 TTBK1Q5TCY1 1321 aaPredicted RBP12.54□□□□□ -0.4
SIK3-203ENST00000415541 CCDC180Q9P1Z9 1646 aa12.54□□□□□ -0.4
SIK3-203ENST00000415541 PPARGC1BQ86YN6 1023 aaKnown RBP12.53□□□□□ -0.4
SIK3-203ENST00000415541 ZCCHC6Q5VYS8 1495 aaKnown RBP12.52□□□□□ -0.41
SIK3-203ENST00000415541 PCGF6Q9BYE7 350 aa12.51□□□□□ -0.41
SIK3-203ENST00000415541 SCAF1Q9H7N4 1312 aaKnown RBP12.44□□□□□ -0.42
SIK3-203ENST00000415541 EHMT2Q96KQ7 1210 aa12.4□□□□□ -0.42
SIK3-203ENST00000415541 PABPN1Q86U42 306 aaKnown RBP eCLIP12.33□□□□□ -0.44
SIK3-203ENST00000415541 ZEB1P37275 1124 aaPredicted RBP12.31□□□□□ -0.44
SIK3-203ENST00000415541 FAM9AQ8IZU1 332 aaPredicted RBP12.28□□□□□ -0.44
SIK3-203ENST00000415541 SCRIBQ14160 1630 aa12.19□□□□□ -0.46
SIK3-203ENST00000415541 MYO15BQ96JP2 1530 aa12.19□□□□□ -0.46
SIK3-203ENST00000415541 TRIM41Q8WV44 630 aa12.16□□□□□ -0.46
SIK3-203ENST00000415541 ACIN1Q9UKV3 1341 aaKnown RBP12.15□□□□□ -0.46
SIK3-203ENST00000415541 CENPBP07199 599 aaPredicted RBP12.14□□□□□ -0.47
SIK3-203ENST00000415541 CHIC1Q5VXU3 224 aa12.14□□□□□ -0.47
SIK3-203ENST00000415541 DCAF1Q9Y4B6 1507 aa12.11□□□□□ -0.47
SIK3-203ENST00000415541 TRIM26Q12899 539 aaPredicted RBP12.09□□□□□ -0.47
SIK3-203ENST00000415541 GTF3C3Q9Y5Q9 886 aa12.04□□□□□ -0.48
SIK3-203ENST00000415541 LOC105371045A0A1W2PR82 267 aa11.98□□□□□ -0.49
SIK3-203ENST00000415541 NEUROD1Q13562 356 aa11.98□□□□□ -0.49
SIK3-203ENST00000415541 NACADO15069 1562 aa11.96□□□□□ -0.49
SIK3-203ENST00000415541 BCL11AQ9H165 835 aa11.95□□□□□ -0.5
SIK3-203ENST00000415541 RB1CC1Q8TDY2 1594 aa11.95□□□□□ -0.5
SIK3-203ENST00000415541 RANGAP1P46060 587 aaPredicted RBP11.9□□□□□ -0.5
SIK3-203ENST00000415541 ERICH6Q7L0X2 663 aa11.86□□□□□ -0.51
SIK3-203ENST00000415541 RSF1Q96T23 1441 aaPredicted RBP11.86□□□□□ -0.51
SIK3-203ENST00000415541 CECR2Q9BXF3 1484 aa11.84□□□□□ -0.51
SIK3-203ENST00000415541 UBTFP17480 764 aaKnown RBP11.82□□□□□ -0.52
SIK3-203ENST00000415541 PRKCSHP14314 528 aaPredicted RBP11.76□□□□□ -0.53
SIK3-203ENST00000415541 ANP32EQ9BTT0 268 aa11.74□□□□□ -0.53
SIK3-203ENST00000415541 DIEXFQ68CQ4 756 aaKnown RBP11.73□□□□□ -0.53
SIK3-203ENST00000415541 MROH2BQ7Z745 1585 aa11.67□□□□□ -0.54
SIK3-203ENST00000415541 APLP2Q06481 763 aa11.67□□□□□ -0.54
SIK3-203ENST00000415541 BAZ1AQ9NRL2 1556 aaPredicted RBP11.6□□□□□ -0.55
SIK3-203ENST00000415541 ATP1B4Q9UN42 357 aaPredicted RBP11.58□□□□□ -0.56
SIK3-203ENST00000415541 CLSPNQ9HAW4 1339 aa11.58□□□□□ -0.56
SIK3-203ENST00000415541 CCER1Q8TC90 406 aaPredicted RBP11.56□□□□□ -0.56
SIK3-203ENST00000415541 YTHDC1Q96MU7 727 aaKnown RBP11.54□□□□□ -0.56
SIK3-203ENST00000415541 WIZO95785 1651 aa11.52□□□□□ -0.57
SIK3-203ENST00000415541 CSRNP3Q8WYN3 585 aa11.51□□□□□ -0.57
SIK3-203ENST00000415541 BAZ1BQ9UIG0 1483 aaKnown RBP11.5□□□□□ -0.57
SIK3-203ENST00000415541 CCDC88BA6NC98 1476 aa11.44□□□□□ -0.58
SIK3-203ENST00000415541 ZNF316A6NFI3 1004 aaPredicted RBP11.42□□□□□ -0.58
SIK3-203ENST00000415541 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.41□□□□□ -0.58
SIK3-203ENST00000415541 EIF4G1Q04637 1599 aaKnown RBP11.41□□□□□ -0.58
SIK3-203ENST00000415541 TSHZ2Q9NRE2 1034 aa11.39□□□□□ -0.59
SIK3-203ENST00000415541 SMARCA4P51532 1647 aa11.38□□□□□ -0.59
SIK3-203ENST00000415541 ATAD2BQ9ULI0 1458 aa11.36□□□□□ -0.59
SIK3-203ENST00000415541 WRNQ14191 1432 aaPredicted RBP eCLIP11.35□□□□□ -0.59
SIK3-203ENST00000415541 ABCC8Q09428 1581 aa11.33□□□□□ -0.6
SIK3-203ENST00000415541 SUPT16HQ9Y5B9 1047 aaKnown RBP11.33□□□□□ -0.6
SIK3-203ENST00000415541 HNRNPUL2Q1KMD3 747 aaKnown RBP11.33□□□□□ -0.6
SIK3-203ENST00000415541 TOP2AP11388 1531 aaKnown RBP11.33□□□□□ -0.6
SIK3-203ENST00000415541 ITGAEP38570 1179 aa11.33□□□□□ -0.6
SIK3-203ENST00000415541 MYT1LQ9UL68 1186 aa11.33□□□□□ -0.6
SIK3-203ENST00000415541 P3H3Q8IVL6 736 aa11.32□□□□□ -0.6
SIK3-203ENST00000415541 SMARCA2P51531 1590 aa11.3□□□□□ -0.6
SIK3-203ENST00000415541 MIER1Q8N108 512 aa11.28□□□□□ -0.6
SIK3-203ENST00000415541 SOGA1O94964 1423 aa11.28□□□□□ -0.6
SIK3-203ENST00000415541 BICRAQ9NZM4 1560 aa11.28□□□□□ -0.6
SIK3-203ENST00000415541 FBLN2P98095 1184 aa11.27□□□□□ -0.6
SIK3-203ENST00000415541 UNC13AQ9UPW8 1703 aa11.23□□□□□ -0.61
SIK3-203ENST00000415541 ARID3CA6NKF2 412 aa11.19□□□□□ -0.62
SIK3-203ENST00000415541 CADPSQ9ULU8 1353 aa11.14□□□□□ -0.63
SIK3-203ENST00000415541 RUSC2Q8N2Y8 1516 aa11.14□□□□□ -0.63
SIK3-203ENST00000415541 EEA1Q15075 1411 aa11.14□□□□□ -0.63
SIK3-203ENST00000415541 CEP162Q5TB80 1403 aa11.14□□□□□ -0.63
SIK3-203ENST00000415541 NCAPD3P42695 1498 aa11.13□□□□□ -0.63
SIK3-203ENST00000415541 RBM19Q9Y4C8 960 aaKnown RBP11.13□□□□□ -0.63
SIK3-203ENST00000415541 ERICH6BQ5W0A0 696 aa11.12□□□□□ -0.63
SIK3-203ENST00000415541 DNAJC5BQ9UF47 199 aa11.12□□□□□ -0.63
SIK3-203ENST00000415541 FAM50AQ14320 339 aaKnown RBP11.12□□□□□ -0.63
SIK3-203ENST00000415541 CLIP1P30622 1438 aa11.12□□□□□ -0.63
SIK3-203ENST00000415541 KIF27Q86VH2 1401 aa11.12□□□□□ -0.63
SIK3-203ENST00000415541 GOLGA3Q08378 1498 aa11.11□□□□□ -0.63
SIK3-203ENST00000415541 NEFLP07196 543 aa11.11□□□□□ -0.63
SIK3-203ENST00000415541 TNIKQ9UKE5 1360 aa11.09□□□□□ -0.63
SIK3-203ENST00000415541 ANO8Q9HCE9 1232 aaPredicted RBP11.09□□□□□ -0.63
SIK3-203ENST00000415541 CUX2O14529 1486 aa11.08□□□□□ -0.64
SIK3-203ENST00000415541 CEP164Q9UPV0 1460 aa11.06□□□□□ -0.64
SIK3-203ENST00000415541 DEKP35659 375 aaKnown RBP11.05□□□□□ -0.64
SIK3-203ENST00000415541 BCANQ96GW7 911 aa11.04□□□□□ -0.64
SIK3-203ENST00000415541 UBE2Q2Q8WVN8 375 aa11.04□□□□□ -0.64
SIK3-203ENST00000415541 TDRD9Q8NDG6 1382 aaKnown RBP11.04□□□□□ -0.64
SIK3-203ENST00000415541 PEG3Q9GZU2 1588 aa11.03□□□□□ -0.64
SIK3-203ENST00000415541 CC2D2AQ9P2K1 1620 aa11.02□□□□□ -0.65
SIK3-203ENST00000415541 CARMIL1Q5VZK9 1371 aa11.01□□□□□ -0.65
SIK3-203ENST00000415541 ERCC6Q03468 1493 aa11.01□□□□□ -0.65
SIK3-203ENST00000415541 FKBP8Q14318 412 aa11.01□□□□□ -0.65
SIK3-203ENST00000415541 CHMP7Q8WUX9 453 aaPredicted RBP11.01□□□□□ -0.65
SIK3-203ENST00000415541 PDS5BQ9NTI5 1447 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms