RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 CC2D2AQ9P2K1 1620 aa19.41■□□□□ 0.7
VPS54-203ENST00000409558 BIVM-ERCC5R4GMW8 1640 aa19.38■□□□□ 0.69
VPS54-203ENST00000409558 KCNH8Q96L42 1107 aa19.37■□□□□ 0.69
VPS54-203ENST00000409558 RAB3GAP2Q9H2M9 1393 aa19.36■□□□□ 0.69
VPS54-203ENST00000409558 DDX10Q13206 875 aaKnown RBP19.36■□□□□ 0.69
VPS54-203ENST00000409558 PHLDB1Q86UU1 1377 aa19.34■□□□□ 0.69
VPS54-203ENST00000409558 ERICH3Q5RHP9 1530 aa19.33■□□□□ 0.69
VPS54-203ENST00000409558 CNGB1Q14028 1251 aaPredicted RBP19.33■□□□□ 0.68
VPS54-203ENST00000409558 FBLN2P98095 1184 aa19.32■□□□□ 0.68
VPS54-203ENST00000409558 RRP7BPQ9NSQ0 103 aa19.29■□□□□ 0.68
VPS54-203ENST00000409558 TRIM52Q96A61 297 aa19.27■□□□□ 0.68
VPS54-203ENST00000409558 MTUS2Q5JR59 1369 aa19.25■□□□□ 0.67
VPS54-203ENST00000409558 BCANQ96GW7 911 aa19.24■□□□□ 0.67
VPS54-203ENST00000409558 POLA1P09884 1462 aaPredicted RBP19.22■□□□□ 0.67
VPS54-203ENST00000409558 RRBP1Q9P2E9 1410 aaKnown RBP19.19■□□□□ 0.66
VPS54-203ENST00000409558 TOPBP1Q92547 1522 aa19.17■□□□□ 0.66
VPS54-203ENST00000409558 SETD5Q9C0A6 1442 aa19.16■□□□□ 0.66
VPS54-203ENST00000409558 FOXD1Q16676 465 aa19.16■□□□□ 0.66
VPS54-203ENST00000409558 LRRC9Q6ZRR7 1453 aa19.15■□□□□ 0.66
VPS54-203ENST00000409558 FHAD1B1AJZ9 1412 aa19.13■□□□□ 0.65
VPS54-203ENST00000409558 ZNF777Q9ULD5 760 aaPredicted RBP19.11■□□□□ 0.65
VPS54-203ENST00000409558 POLR3GLQ9BT43 218 aa19.09■□□□□ 0.65
VPS54-203ENST00000409558 AQRO60306 1485 aaKnown RBP eCLIP19.09■□□□□ 0.651e-7■■■■□ 25.8
VPS54-203ENST00000409558 CLSPNQ9HAW4 1339 aa19.09■□□□□ 0.65
VPS54-203ENST00000409558 TIAM1Q13009 1591 aa19.08■□□□□ 0.64
VPS54-203ENST00000409558 PCF11O94913 1555 aaKnown RBP19.06■□□□□ 0.64
VPS54-203ENST00000409558 URB2Q14146 1524 aaKnown RBP19.06■□□□□ 0.64
VPS54-203ENST00000409558 TONSLQ96HA7 1378 aa19.05■□□□□ 0.64
VPS54-203ENST00000409558 ZNF326Q5BKZ1 582 aaKnown RBP19.03■□□□□ 0.64
VPS54-203ENST00000409558 SENP3-EIF4A1A0A087X0R7 540 aa19.03■□□□□ 0.64
VPS54-203ENST00000409558 GAPVD1Q14C86 1478 aa19.03■□□□□ 0.64
VPS54-203ENST00000409558 PELP1Q8IZL8 1130 aaKnown RBP19■□□□□ 0.63
VPS54-203ENST00000409558 PDS5BQ9NTI5 1447 aa18.99■□□□□ 0.63
VPS54-203ENST00000409558 DNMBPQ6XZF7 1577 aa18.99■□□□□ 0.63
VPS54-203ENST00000409558 ABCA10Q8WWZ4 1543 aa18.98■□□□□ 0.63
VPS54-203ENST00000409558 ZNF644Q9H582 1327 aaPredicted RBP18.96■□□□□ 0.63
VPS54-203ENST00000409558 PPP1R15AO75807 674 aaPredicted RBP18.96■□□□□ 0.63
VPS54-203ENST00000409558 WDR97A6NE52 1622 aa18.94■□□□□ 0.62
VPS54-203ENST00000409558 FMN1Q68DA7 1419 aa18.94■□□□□ 0.62
VPS54-203ENST00000409558 ANP32CO43423 234 aa18.94■□□□□ 0.62
VPS54-203ENST00000409558 MAPKBP1O60336 1514 aa18.94■□□□□ 0.62
VPS54-203ENST00000409558 CHMP7Q8WUX9 453 aaPredicted RBP18.93■□□□□ 0.62
VPS54-203ENST00000409558 PTPRKQ15262 1439 aa18.92■□□□□ 0.62
VPS54-203ENST00000409558 FGD6Q6ZV73 1430 aa18.92■□□□□ 0.62
VPS54-203ENST00000409558 CASKIN1Q8WXD9 1431 aa18.91■□□□□ 0.62
VPS54-203ENST00000409558 SUPT16HQ9Y5B9 1047 aaKnown RBP18.91■□□□□ 0.62
VPS54-203ENST00000409558 FKBP8Q14318 412 aa18.9■□□□□ 0.62
VPS54-203ENST00000409558 IRX6P78412 446 aaPredicted RBP18.88■□□□□ 0.61
VPS54-203ENST00000409558 NCOA2Q15596 1464 aa18.85■□□□□ 0.61
VPS54-203ENST00000409558 CCDC18Q5T9S5 1454 aa18.84■□□□□ 0.61
VPS54-203ENST00000409558 FYCO1Q9BQS8 1478 aa18.84■□□□□ 0.61
VPS54-203ENST00000409558 ZNF608Q9ULD9 1512 aaPredicted RBP18.82■□□□□ 0.6
VPS54-203ENST00000409558 SLC4A1APQ9BWU0 796 aaKnown RBP18.82■□□□□ 0.6
VPS54-203ENST00000409558 PRDM2Q13029 1718 aa18.81■□□□□ 0.6
VPS54-203ENST00000409558 CDK13Q14004 1512 aaKnown RBP18.81■□□□□ 0.6
VPS54-203ENST00000409558 MPHOSPH9Q99550 1183 aa18.79■□□□□ 0.6
VPS54-203ENST00000409558 HNRNPUQ00839 825 aaKnown RBP eCLIP18.78■□□□□ 0.6
VPS54-203ENST00000409558 HSPA5P11021 654 aaKnown RBP18.78■□□□□ 0.6
VPS54-203ENST00000409558 L3MBTL2Q969R5 705 aa18.78■□□□□ 0.6
VPS54-203ENST00000409558 ERCC6Q03468 1493 aa18.77■□□□□ 0.6
VPS54-203ENST00000409558 MYOM3Q5VTT5 1437 aa18.77■□□□□ 0.6
VPS54-203ENST00000409558 FAM9BQ8IZU0 186 aa18.77■□□□□ 0.59
VPS54-203ENST00000409558 CFDP1Q9UEE9 299 aaPredicted RBP18.76■□□□□ 0.59
VPS54-203ENST00000409558 NEFLP07196 543 aa18.76■□□□□ 0.59
VPS54-203ENST00000409558 KIF21AQ7Z4S6 1674 aa18.74■□□□□ 0.59
VPS54-203ENST00000409558 KDM2AQ9Y2K7 1162 aa18.74■□□□□ 0.59
VPS54-203ENST00000409558 SNAPC4Q5SXM2 1469 aa18.74■□□□□ 0.59
VPS54-203ENST00000409558 LAMC3Q9Y6N6 1575 aa18.74■□□□□ 0.59
VPS54-203ENST00000409558 NAIPQ13075 1403 aa18.73■□□□□ 0.59
VPS54-203ENST00000409558 EFCAB5A4FU69 1503 aa18.72■□□□□ 0.59
VPS54-203ENST00000409558 MAP3K1Q13233 1512 aa18.71■□□□□ 0.59
VPS54-203ENST00000409558 CDK11AQ9UQ88 783 aaPredicted RBP18.7■□□□□ 0.58
VPS54-203ENST00000409558 CUL7Q14999 1698 aa18.68■□□□□ 0.58
VPS54-203ENST00000409558 EIF4G2P78344 907 aaKnown RBP eCLIP18.68■□□□□ 0.58
VPS54-203ENST00000409558 MAGI3Q5TCQ9 1506 aa18.67■□□□□ 0.58
VPS54-203ENST00000409558 CCDC184Q52MB2 194 aa18.67■□□□□ 0.58
VPS54-203ENST00000409558 UACAQ9BZF9 1416 aa18.66■□□□□ 0.58
VPS54-203ENST00000409558 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.66■□□□□ 0.586e-8■■□□□ 11.6
VPS54-203ENST00000409558 HFM1A2PYH4 1435 aa18.66■□□□□ 0.58
VPS54-203ENST00000409558 CFAP43Q8NDM7 1665 aa18.65■□□□□ 0.58
VPS54-203ENST00000409558 CTTNBP2Q8WZ74 1663 aa18.65■□□□□ 0.58
VPS54-203ENST00000409558 JPH4Q96JJ6 628 aa18.65■□□□□ 0.58
VPS54-203ENST00000409558 C11orf95C9JLR9 678 aaPredicted RBP18.64■□□□□ 0.57
VPS54-203ENST00000409558 GRIN2BQ13224 1484 aa18.64■□□□□ 0.57
VPS54-203ENST00000409558 PRG4Q92954 1404 aaPredicted RBP18.63■□□□□ 0.57
VPS54-203ENST00000409558 NBPF8Q3BBV2 869 aa18.63■□□□□ 0.57
VPS54-203ENST00000409558 EPRSP07814 1512 aaKnown RBP18.62■□□□□ 0.57
VPS54-203ENST00000409558 WASHC2AQ641Q2 1341 aa18.62■□□□□ 0.57
VPS54-203ENST00000409558 TIMELESSQ9UNS1 1208 aa18.61■□□□□ 0.57
VPS54-203ENST00000409558 HNRNPMP52272 730 aaKnown RBP eCLIP18.6■□□□□ 0.572e-6■■■■□ 21.4
VPS54-203ENST00000409558 RGL3Q3MIN7 710 aa18.6■□□□□ 0.57
VPS54-203ENST00000409558 PKD2Q13563 968 aa18.6■□□□□ 0.57
VPS54-203ENST00000409558 THOC2Q8NI27 1593 aaKnown RBP18.6■□□□□ 0.57
VPS54-203ENST00000409558 ABCA5Q8WWZ7 1642 aa18.59■□□□□ 0.57
VPS54-203ENST00000409558 PLEKHD1A6NEE1 506 aa18.59■□□□□ 0.57
VPS54-203ENST00000409558 MRC2Q9UBG0 1479 aa18.59■□□□□ 0.57
VPS54-203ENST00000409558 MRS2Q9HD23 443 aa18.59■□□□□ 0.57
VPS54-203ENST00000409558 SALL2Q9Y467 1007 aaPredicted RBP18.58■□□□□ 0.56
VPS54-203ENST00000409558 PTPN23Q9H3S7 1636 aa18.57■□□□□ 0.56
VPS54-203ENST00000409558 PLB1Q6P1J6 1458 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms