RNA–Protein interactions for RNA: ENST00000409455.5

LIMS2-205, Transcript of LIM zinc finger domain containing 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS2, Length 2,500 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-205ENST00000409455 TARBP1Q13395 1621 aaKnown RBP22.73■■□□□ 1.23
LIMS2-205ENST00000409455 GAPVD1Q14C86 1478 aa22.72■■□□□ 1.23
LIMS2-205ENST00000409455 WDR62O43379 1518 aa22.71■■□□□ 1.23
LIMS2-205ENST00000409455 ABCA5Q8WWZ7 1642 aa22.69■■□□□ 1.22
LIMS2-205ENST00000409455 CLSPNQ9HAW4 1339 aa22.68■■□□□ 1.22
LIMS2-205ENST00000409455 HNRNPUL2Q1KMD3 747 aaKnown RBP22.65■■□□□ 1.22
LIMS2-205ENST00000409455 AQRO60306 1485 aaKnown RBP eCLIP22.64■■□□□ 1.21
LIMS2-205ENST00000409455 VPS8Q8N3P4 1428 aa22.64■■□□□ 1.21
LIMS2-205ENST00000409455 CUL7Q14999 1698 aa22.62■■□□□ 1.21
LIMS2-205ENST00000409455 IFT140Q96RY7 1462 aa22.61■■□□□ 1.21
LIMS2-205ENST00000409455 THOC2Q8NI27 1593 aaKnown RBP22.59■■□□□ 1.21
LIMS2-205ENST00000409455 ARAP1Q96P48 1450 aa22.57■■□□□ 1.2
LIMS2-205ENST00000409455 ZNF608Q9ULD9 1512 aaPredicted RBP22.57■■□□□ 1.2
LIMS2-205ENST00000409455 ARHGAP35Q9NRY4 1499 aa22.56■■□□□ 1.2
LIMS2-205ENST00000409455 SUPT16HQ9Y5B9 1047 aaKnown RBP22.51■■□□□ 1.19
LIMS2-205ENST00000409455 APLP2Q06481 763 aa22.5■■□□□ 1.19
LIMS2-205ENST00000409455 GRIN2BQ13224 1484 aa22.49■■□□□ 1.19
LIMS2-205ENST00000409455 PBRM1Q86U86 1689 aa22.47■■□□□ 1.19
LIMS2-205ENST00000409455 FHAD1B1AJZ9 1412 aa22.46■■□□□ 1.19
LIMS2-205ENST00000409455 P3H3Q8IVL6 736 aa22.45■■□□□ 1.18
LIMS2-205ENST00000409455 EIF4G3O43432 1585 aaKnown RBP22.39■■□□□ 1.17
LIMS2-205ENST00000409455 ADAMTS12P58397 1594 aa22.38■■□□□ 1.17
LIMS2-205ENST00000409455 CTTNBP2Q8WZ74 1663 aa22.38■■□□□ 1.17
LIMS2-205ENST00000409455 SNAPC4Q5SXM2 1469 aa22.35■■□□□ 1.17
LIMS2-205ENST00000409455 FHOD3Q2V2M9 1422 aa22.33■■□□□ 1.16
LIMS2-205ENST00000409455 KANK4Q5T7N3 995 aaPredicted RBP22.32■■□□□ 1.16
LIMS2-205ENST00000409455 ANP32EQ9BTT0 268 aa22.32■■□□□ 1.16
LIMS2-205ENST00000409455 TSHZ2Q9NRE2 1034 aa22.32■■□□□ 1.16
LIMS2-205ENST00000409455 EFCAB5A4FU69 1503 aa22.3■■□□□ 1.16
LIMS2-205ENST00000409455 DHX57Q6P158 1386 aaKnown RBP22.28■■□□□ 1.16
LIMS2-205ENST00000409455 CHMP7Q8WUX9 453 aaPredicted RBP22.26■■□□□ 1.15
LIMS2-205ENST00000409455 MAGI1Q96QZ7 1491 aaPredicted RBP22.26■■□□□ 1.15
LIMS2-205ENST00000409455 FBLN2P98095 1184 aa22.24■■□□□ 1.15
LIMS2-205ENST00000409455 ATP1B4Q9UN42 357 aaPredicted RBP22.24■■□□□ 1.15
LIMS2-205ENST00000409455 GRIN2AQ12879 1464 aa22.23■■□□□ 1.15
LIMS2-205ENST00000409455 SAMD9Q5K651 1589 aa22.2■■□□□ 1.15
LIMS2-205ENST00000409455 SYNJ2O15056 1496 aa22.2■■□□□ 1.14
LIMS2-205ENST00000409455 IQGAP2Q13576 1575 aa22.2■■□□□ 1.14
LIMS2-205ENST00000409455 FMN1Q68DA7 1419 aa22.17■■□□□ 1.14
LIMS2-205ENST00000409455 KIAA0586Q9BVV6 1533 aa22.16■■□□□ 1.14
LIMS2-205ENST00000409455 PCF11O94913 1555 aaKnown RBP22.16■■□□□ 1.14
LIMS2-205ENST00000409455 CASKIN1Q8WXD9 1431 aa22.15■■□□□ 1.14
LIMS2-205ENST00000409455 MAP3K1Q13233 1512 aa22.13■■□□□ 1.13
LIMS2-205ENST00000409455 TIAM1Q13009 1591 aa22.13■■□□□ 1.13
LIMS2-205ENST00000409455 FYCO1Q9BQS8 1478 aa22.12■■□□□ 1.13
LIMS2-205ENST00000409455 UGGT2Q9NYU1 1516 aa22.09■■□□□ 1.13
LIMS2-205ENST00000409455 CEP170Q5SW79 1584 aa22.08■■□□□ 1.12
LIMS2-205ENST00000409455 LRRC9Q6ZRR7 1453 aa22.07■■□□□ 1.12
LIMS2-205ENST00000409455 BCL11AQ9H165 835 aa22.07■■□□□ 1.12
LIMS2-205ENST00000409455 NUP160Q12769 1436 aa22.05■■□□□ 1.12
LIMS2-205ENST00000409455 DISP1Q96F81 1524 aa22.02■■□□□ 1.12
LIMS2-205ENST00000409455 JPH4Q96JJ6 628 aa22.02■■□□□ 1.11
LIMS2-205ENST00000409455 RRBP1Q9P2E9 1410 aaKnown RBP22.01■■□□□ 1.11
LIMS2-205ENST00000409455 CFAP43Q8NDM7 1665 aa21.99■■□□□ 1.11
LIMS2-205ENST00000409455 BCANQ96GW7 911 aa21.98■■□□□ 1.11
LIMS2-205ENST00000409455 KIAA0556O60303 1618 aa21.96■■□□□ 1.11
LIMS2-205ENST00000409455 KCNH8Q96L42 1107 aa21.96■■□□□ 1.11
LIMS2-205ENST00000409455 FKBP8Q14318 412 aa21.95■■□□□ 1.1
LIMS2-205ENST00000409455 PHLDB1Q86UU1 1377 aa21.94■■□□□ 1.1
LIMS2-205ENST00000409455 CCNB3Q8WWL7 1395 aa21.94■■□□□ 1.1
LIMS2-205ENST00000409455 MTUS2Q5JR59 1369 aa21.92■■□□□ 1.1
LIMS2-205ENST00000409455 LRRIQ1Q96JM4 1722 aa21.91■■□□□ 1.1
LIMS2-205ENST00000409455 ARID3CA6NKF2 412 aa21.9■■□□□ 1.1
LIMS2-205ENST00000409455 NEFLP07196 543 aa21.88■■□□□ 1.09
LIMS2-205ENST00000409455 CARMIL2Q6F5E8 1435 aa21.88■■□□□ 1.09
LIMS2-205ENST00000409455 EPRSP07814 1512 aaKnown RBP21.86■■□□□ 1.09
LIMS2-205ENST00000409455 HECW1Q76N89 1606 aa21.86■■□□□ 1.09
LIMS2-205ENST00000409455 CHD1O14646 1710 aa21.86■■□□□ 1.09
LIMS2-205ENST00000409455 CCDC18Q5T9S5 1454 aa21.85■■□□□ 1.09
LIMS2-205ENST00000409455 ITGAEP38570 1179 aa21.85■■□□□ 1.09
LIMS2-205ENST00000409455 RBM19Q9Y4C8 960 aaKnown RBP21.84■■□□□ 1.09
LIMS2-205ENST00000409455 FAM50AQ14320 339 aaKnown RBP21.81■■□□□ 1.08
LIMS2-205ENST00000409455 CDK13Q14004 1512 aaKnown RBP21.81■■□□□ 1.08
LIMS2-205ENST00000409455 MAGI3Q5TCQ9 1506 aa21.81■■□□□ 1.08
LIMS2-205ENST00000409455 MAPKBP1O60336 1514 aa21.8■■□□□ 1.08
LIMS2-205ENST00000409455 PRG4Q92954 1404 aaPredicted RBP21.8■■□□□ 1.08
LIMS2-205ENST00000409455 RAB3GAP2Q9H2M9 1393 aa21.79■■□□□ 1.08
LIMS2-205ENST00000409455 NUP153P49790 1475 aaKnown RBP21.79■■□□□ 1.08
LIMS2-205ENST00000409455 PLB1Q6P1J6 1458 aa21.79■■□□□ 1.08
LIMS2-205ENST00000409455 DDX10Q13206 875 aaKnown RBP21.78■■□□□ 1.08
LIMS2-205ENST00000409455 NCOA2Q15596 1464 aa21.77■■□□□ 1.08
LIMS2-205ENST00000409455 EHBP1L1Q8N3D4 1523 aa21.77■■□□□ 1.08
LIMS2-205ENST00000409455 RAPGEF6Q8TEU7 1601 aa21.77■■□□□ 1.08
LIMS2-205ENST00000409455 FGD6Q6ZV73 1430 aa21.72■■□□□ 1.07
LIMS2-205ENST00000409455 SUPT6HQ7KZ85 1726 aaKnown RBP21.71■■□□□ 1.07
LIMS2-205ENST00000409455 CCER2I3L3R5 266 aa21.7■■□□□ 1.06
LIMS2-205ENST00000409455 PTPRGP23470 1445 aa21.7■■□□□ 1.06
LIMS2-205ENST00000409455 CDK11AQ9UQ88 783 aaPredicted RBP21.69■■□□□ 1.06
LIMS2-205ENST00000409455 MYOM3Q5VTT5 1437 aa21.69■■□□□ 1.06
LIMS2-205ENST00000409455 PPP1R15AO75807 674 aaPredicted RBP21.68■■□□□ 1.06
LIMS2-205ENST00000409455 ARHGEF11O15085 1522 aa21.68■■□□□ 1.06
LIMS2-205ENST00000409455 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.67■■□□□ 1.06
LIMS2-205ENST00000409455 SETD5Q9C0A6 1442 aa21.67■■□□□ 1.06
LIMS2-205ENST00000409455 TRIM52Q96A61 297 aa21.66■■□□□ 1.06
LIMS2-205ENST00000409455 SHROOM2Q13796 1616 aa21.66■■□□□ 1.06
LIMS2-205ENST00000409455 ANP32CO43423 234 aa21.65■■□□□ 1.06
LIMS2-205ENST00000409455 ABCA8O94911 1581 aa21.64■■□□□ 1.05
LIMS2-205ENST00000409455 TIMELESSQ9UNS1 1208 aa21.63■■□□□ 1.05
LIMS2-205ENST00000409455 ERCC6L2Q5T890 1561 aa21.62■■□□□ 1.05
LIMS2-205ENST00000409455 CLASP1Q7Z460 1538 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms