RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 SAMD1Q6SPF0 538 aaPredicted RBP16.26■□□□□ 0.19
VPS53-203ENST00000401468 ABCC8Q09428 1581 aa16.26■□□□□ 0.19
VPS53-203ENST00000401468 FGD5Q6ZNL6 1462 aa16.23■□□□□ 0.19
VPS53-203ENST00000401468 WDR97A6NE52 1622 aa16.21■□□□□ 0.19
VPS53-203ENST00000401468 ZNF219Q9P2Y4 722 aaPredicted RBP16.21■□□□□ 0.19
VPS53-203ENST00000401468 PBRM1Q86U86 1689 aa16.21■□□□□ 0.18
VPS53-203ENST00000401468 MYCNP04198 464 aaPredicted RBP16.2■□□□□ 0.18
VPS53-203ENST00000401468 TDRD9Q8NDG6 1382 aaKnown RBP16.18■□□□□ 0.18
VPS53-203ENST00000401468 SOGA1O94964 1423 aa16.17■□□□□ 0.18
VPS53-203ENST00000401468 FBLN2P98095 1184 aa16.16■□□□□ 0.18
VPS53-203ENST00000401468 ARHGEF11O15085 1522 aa16.14■□□□□ 0.18
VPS53-203ENST00000401468 SNAPC4Q5SXM2 1469 aa16.12■□□□□ 0.17
VPS53-203ENST00000401468 ABCB7O75027 752 aa16.11■□□□□ 0.17
VPS53-203ENST00000401468 FOXD4L1Q9NU39 408 aa16.11■□□□□ 0.17
VPS53-203ENST00000401468 SYNJ1O43426 1573 aa16.09■□□□□ 0.17
VPS53-203ENST00000401468 BIVM-ERCC5R4GMW8 1640 aa16.05■□□□□ 0.16
VPS53-203ENST00000401468 ABCA5Q8WWZ7 1642 aa16.05■□□□□ 0.16
VPS53-203ENST00000401468 TOP2BQ02880 1626 aa16.01■□□□□ 0.15
VPS53-203ENST00000401468 GRIN2BQ13224 1484 aa15.99■□□□□ 0.15
VPS53-203ENST00000401468 GAPVD1Q14C86 1478 aa15.99■□□□□ 0.15
VPS53-203ENST00000401468 CLASP1Q7Z460 1538 aa15.98■□□□□ 0.15
VPS53-203ENST00000401468 ARAP1Q96P48 1450 aa15.97■□□□□ 0.15
VPS53-203ENST00000401468 CYB5RLQ6IPT4 315 aa15.97■□□□□ 0.15
VPS53-203ENST00000401468 MAGI1Q96QZ7 1491 aaPredicted RBP15.97■□□□□ 0.15
VPS53-203ENST00000401468 ABCA10Q8WWZ4 1543 aa15.96■□□□□ 0.15
VPS53-203ENST00000401468 CHMP7Q8WUX9 453 aaPredicted RBP15.95■□□□□ 0.14
VPS53-203ENST00000401468 WRNQ14191 1432 aaPredicted RBP eCLIP15.94■□□□□ 0.14
VPS53-203ENST00000401468 SYNJ2O15056 1496 aa15.93■□□□□ 0.14
VPS53-203ENST00000401468 ADAMTS12P58397 1594 aa15.92■□□□□ 0.14
VPS53-203ENST00000401468 ILDR1Q86SU0 546 aaPredicted RBP15.89■□□□□ 0.13
VPS53-203ENST00000401468 ERCC6L2Q5T890 1561 aa15.88■□□□□ 0.13
VPS53-203ENST00000401468 ZBTB22O15209 634 aa15.88■□□□□ 0.13
VPS53-203ENST00000401468 CEP170Q5SW79 1584 aa15.87■□□□□ 0.13
VPS53-203ENST00000401468 GRIN2AQ12879 1464 aa15.83■□□□□ 0.12
VPS53-203ENST00000401468 POLA2Q14181 598 aa15.82■□□□□ 0.12
VPS53-203ENST00000401468 ATF5Q9Y2D1 282 aaPredicted RBP15.79■□□□□ 0.12
VPS53-203ENST00000401468 ERICH3Q5RHP9 1530 aa15.76■□□□□ 0.11
VPS53-203ENST00000401468 SHROOM2Q13796 1616 aa15.74■□□□□ 0.11
VPS53-203ENST00000401468 FHAD1B1AJZ9 1412 aa15.73■□□□□ 0.11
VPS53-203ENST00000401468 NUP160Q12769 1436 aa15.71■□□□□ 0.11
VPS53-203ENST00000401468 RUSC2Q8N2Y8 1516 aa15.7■□□□□ 0.1
VPS53-203ENST00000401468 CUL7Q14999 1698 aa15.65■□□□□ 0.1
VPS53-203ENST00000401468 KIF13AQ9H1H9 1805 aa15.64■□□□□ 0.09
VPS53-203ENST00000401468 PRG4Q92954 1404 aaPredicted RBP15.61■□□□□ 0.09
VPS53-203ENST00000401468 KIF27Q86VH2 1401 aa15.59■□□□□ 0.09
VPS53-203ENST00000401468 ATXN8OSP0DMR3 200 aa15.58■□□□□ 0.08
VPS53-203ENST00000401468 RBM42Q9BTD8 480 aaKnown RBP15.58■□□□□ 0.08
VPS53-203ENST00000401468 TTBK1Q5TCY1 1321 aaPredicted RBP15.57■□□□□ 0.08
VPS53-203ENST00000401468 IGF1RP08069 1367 aa15.57■□□□□ 0.08
VPS53-203ENST00000401468 TSPOAP1O95153 1857 aa15.56■□□□□ 0.08
VPS53-203ENST00000401468 JPH4Q96JJ6 628 aa15.55■□□□□ 0.08
VPS53-203ENST00000401468 ADCY10Q96PN6 1610 aa15.54■□□□□ 0.08
VPS53-203ENST00000401468 ZBTB12Q9Y330 459 aaPredicted RBP15.52■□□□□ 0.08
VPS53-203ENST00000401468 CARMIL1Q5VZK9 1371 aa15.49■□□□□ 0.07
VPS53-203ENST00000401468 CTTNBP2Q8WZ74 1663 aa15.49■□□□□ 0.07
VPS53-203ENST00000401468 KIAA0586Q9BVV6 1533 aa15.48■□□□□ 0.07
VPS53-203ENST00000401468 IQGAP2Q13576 1575 aa15.47■□□□□ 0.07
VPS53-203ENST00000401468 EEA1Q15075 1411 aa15.42■□□□□ 0.06
VPS53-203ENST00000401468 POTEHQ6S545 545 aa15.4■□□□□ 0.06
VPS53-203ENST00000401468 DIP2BQ9P265 1576 aa15.39■□□□□ 0.05
VPS53-203ENST00000401468 RAPGEF2Q9Y4G8 1499 aa15.38■□□□□ 0.05
VPS53-203ENST00000401468 KDM4FA0A1W2PPD8 638 aa15.36■□□□□ 0.05
VPS53-203ENST00000401468 DISP1Q96F81 1524 aa15.35■□□□□ 0.05
VPS53-203ENST00000401468 KIAA0556O60303 1618 aa15.35■□□□□ 0.05
VPS53-203ENST00000401468 MAPKBP1O60336 1514 aa15.33■□□□□ 0.05
VPS53-203ENST00000401468 PTPRGP23470 1445 aa15.33■□□□□ 0.04
VPS53-203ENST00000401468 FAM69CQ0P6D2 419 aa15.32■□□□□ 0.04
VPS53-203ENST00000401468 ZCCHC11Q5TAX3 1644 aaKnown RBP15.32■□□□□ 0.04
VPS53-203ENST00000401468 NPM1P06748 294 aaKnown RBP eCLIP15.31■□□□□ 0.04
VPS53-203ENST00000401468 PRXQ9BXM0 1461 aa15.31■□□□□ 0.04
VPS53-203ENST00000401468 ABCC10Q5T3U5 1492 aa15.3■□□□□ 0.04
VPS53-203ENST00000401468 CARMIL2Q6F5E8 1435 aa15.3■□□□□ 0.04
VPS53-203ENST00000401468 ABCC2Q92887 1545 aa15.3■□□□□ 0.04
VPS53-203ENST00000401468 PPRC1Q5VV67 1664 aaKnown RBP15.29■□□□□ 0.04
VPS53-203ENST00000401468 KIF21BO75037 1637 aa15.29■□□□□ 0.04
VPS53-203ENST00000401468 TNIKQ9UKE5 1360 aa15.29■□□□□ 0.04
VPS53-203ENST00000401468 CSRNP3Q8WYN3 585 aa15.29■□□□□ 0.04
VPS53-203ENST00000401468 UGGT2Q9NYU1 1516 aa15.28■□□□□ 0.04
VPS53-203ENST00000401468 FAM9AQ8IZU1 332 aaPredicted RBP15.26■□□□□ 0.03
VPS53-203ENST00000401468 KDM6BO15054 1643 aa15.25■□□□□ 0.03
VPS53-203ENST00000401468 RANGAP1P46060 587 aaPredicted RBP15.24■□□□□ 0.03
VPS53-203ENST00000401468 EHMT2Q96KQ7 1210 aa15.24■□□□□ 0.03
VPS53-203ENST00000401468 AKT1S1Q96B36 256 aa15.23■□□□□ 0.03
VPS53-203ENST00000401468 ASXL2Q76L83 1435 aa15.23■□□□□ 0.03
VPS53-203ENST00000401468 PLB1Q6P1J6 1458 aa15.22■□□□□ 0.03
VPS53-203ENST00000401468 P3H3Q8IVL6 736 aa15.22■□□□□ 0.03
VPS53-203ENST00000401468 UACAQ9BZF9 1416 aa15.22■□□□□ 0.03
VPS53-203ENST00000401468 ARID3CA6NKF2 412 aa15.21■□□□□ 0.03
VPS53-203ENST00000401468 HECW2Q9P2P5 1572 aa15.19■□□□□ 0.02
VPS53-203ENST00000401468 MAP3K4Q9Y6R4 1608 aa15.17■□□□□ 0.02
VPS53-203ENST00000401468 UHRF1BP1LA0JNW5 1464 aa15.17■□□□□ 0.02
VPS53-203ENST00000401468 CHRDL2Q6WN34 429 aa15.17■□□□□ 0.02
VPS53-203ENST00000401468 ABCA8O94911 1581 aa15.15■□□□□ 0.02
VPS53-203ENST00000401468 KDM5BQ9UGL1 1544 aa15.15■□□□□ 0.02
VPS53-203ENST00000401468 FBXO41Q8TF61 875 aa15.13■□□□□ 0.01
VPS53-203ENST00000401468 GOLGA3Q08378 1498 aa15.13■□□□□ 0.01
VPS53-203ENST00000401468 EPRSP07814 1512 aaKnown RBP15.12■□□□□ 0.01
VPS53-203ENST00000401468 GLI2P10070 1586 aa15.12■□□□□ 0.01
VPS53-203ENST00000401468 SAMD9Q5K651 1589 aa15.12■□□□□ 0.01
VPS53-203ENST00000401468 REM2Q8IYK8 340 aaPredicted RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms