RNA–Protein interactions for RNA: ENST00000400946.2

LINC01139-201, Transcript of long intergenic non-protein coding RNA 1139, humanhuman

TSL 1 (best) BASIC

Gene LINC01139, Length 1,537 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01139-201ENST00000400946 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.18□□□□□ -0.3
LINC01139-201ENST00000400946 APLP2Q06481 763 aa13.17□□□□□ -0.3
LINC01139-201ENST00000400946 FANCD2Q9BXW9 1451 aa13.16□□□□□ -0.3
LINC01139-201ENST00000400946 MRC2Q9UBG0 1479 aa13.15□□□□□ -0.3
LINC01139-201ENST00000400946 CLSPNQ9HAW4 1339 aa13.12□□□□□ -0.31
LINC01139-201ENST00000400946 WDR62O43379 1518 aa13.11□□□□□ -0.31
LINC01139-201ENST00000400946 ARAP1Q96P48 1450 aa13.08□□□□□ -0.32
LINC01139-201ENST00000400946 MAP3K1Q13233 1512 aa13.08□□□□□ -0.32
LINC01139-201ENST00000400946 NPM3O75607 178 aaKnown RBP13.05□□□□□ -0.32
LINC01139-201ENST00000400946 URB2Q14146 1524 aaKnown RBP13.04□□□□□ -0.32
LINC01139-201ENST00000400946 DIEXFQ68CQ4 756 aaKnown RBP13.04□□□□□ -0.32
LINC01139-201ENST00000400946 ZNF316A6NFI3 1004 aaPredicted RBP13.03□□□□□ -0.32
LINC01139-201ENST00000400946 RRBP1Q9P2E9 1410 aaKnown RBP13.02□□□□□ -0.32
LINC01139-201ENST00000400946 PELP1Q8IZL8 1130 aaKnown RBP13□□□□□ -0.33
LINC01139-201ENST00000400946 ARHGAP35Q9NRY4 1499 aa12.99□□□□□ -0.33
LINC01139-201ENST00000400946 IGF1RP08069 1367 aa12.98□□□□□ -0.33
LINC01139-201ENST00000400946 TTBK1Q5TCY1 1321 aaPredicted RBP12.98□□□□□ -0.33
LINC01139-201ENST00000400946 CENPBP07199 599 aaPredicted RBP12.98□□□□□ -0.33
LINC01139-201ENST00000400946 DNAJC5Q9H3Z4 198 aa12.97□□□□□ -0.33
LINC01139-201ENST00000400946 TOPBP1Q92547 1522 aa12.95□□□□□ -0.34
LINC01139-201ENST00000400946 FGD5Q6ZNL6 1462 aa12.95□□□□□ -0.34
LINC01139-201ENST00000400946 ACIN1Q9UKV3 1341 aaKnown RBP12.94□□□□□ -0.34
LINC01139-201ENST00000400946 HNRNPUL2Q1KMD3 747 aaKnown RBP12.94□□□□□ -0.34
LINC01139-201ENST00000400946 DNMBPQ6XZF7 1577 aa12.94□□□□□ -0.34
LINC01139-201ENST00000400946 CARMIL1Q5VZK9 1371 aa12.92□□□□□ -0.34
LINC01139-201ENST00000400946 FHAD1B1AJZ9 1412 aa12.92□□□□□ -0.34
LINC01139-201ENST00000400946 ABCA10Q8WWZ4 1543 aa12.91□□□□□ -0.34
LINC01139-201ENST00000400946 TIAM1Q13009 1591 aa12.91□□□□□ -0.34
LINC01139-201ENST00000400946 CUL7Q14999 1698 aa12.91□□□□□ -0.34
LINC01139-201ENST00000400946 EFCAB5A4FU69 1503 aa12.9□□□□□ -0.34
LINC01139-201ENST00000400946 CCNB3Q8WWL7 1395 aa12.89□□□□□ -0.35
LINC01139-201ENST00000400946 DHX57Q6P158 1386 aaKnown RBP12.88□□□□□ -0.35
LINC01139-201ENST00000400946 IFT140Q96RY7 1462 aa12.88□□□□□ -0.35
LINC01139-201ENST00000400946 AQRO60306 1485 aaKnown RBP eCLIP12.87□□□□□ -0.35
LINC01139-201ENST00000400946 CFAP43Q8NDM7 1665 aa12.87□□□□□ -0.35
LINC01139-201ENST00000400946 KANK4Q5T7N3 995 aaPredicted RBP12.86□□□□□ -0.35
LINC01139-201ENST00000400946 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.84□□□□□ -0.35
LINC01139-201ENST00000400946 POLA1P09884 1462 aaPredicted RBP12.84□□□□□ -0.35
LINC01139-201ENST00000400946 LRRC9Q6ZRR7 1453 aa12.84□□□□□ -0.35
LINC01139-201ENST00000400946 ZNF608Q9ULD9 1512 aaPredicted RBP12.83□□□□□ -0.35
LINC01139-201ENST00000400946 U3KPZ7 1027 aaPredicted RBP12.83□□□□□ -0.36
LINC01139-201ENST00000400946 TARBP1Q13395 1621 aaKnown RBP12.82□□□□□ -0.36
LINC01139-201ENST00000400946 CTTNBP2Q8WZ74 1663 aa12.82□□□□□ -0.36
LINC01139-201ENST00000400946 FYCO1Q9BQS8 1478 aa12.81□□□□□ -0.36
LINC01139-201ENST00000400946 WDR97A6NE52 1622 aa12.81□□□□□ -0.36
LINC01139-201ENST00000400946 RANGAP1P46060 587 aaPredicted RBP12.8□□□□□ -0.36
LINC01139-201ENST00000400946 NEUROD1Q13562 356 aa12.8□□□□□ -0.36
LINC01139-201ENST00000400946 CASKIN1Q8WXD9 1431 aa12.78□□□□□ -0.36
LINC01139-201ENST00000400946 RAD54L2Q9Y4B4 1467 aa12.78□□□□□ -0.36
LINC01139-201ENST00000400946 EIF4G3O43432 1585 aaKnown RBP12.76□□□□□ -0.37
LINC01139-201ENST00000400946 TIMELESSQ9UNS1 1208 aa12.76□□□□□ -0.37
LINC01139-201ENST00000400946 FMN1Q68DA7 1419 aa12.75□□□□□ -0.37
LINC01139-201ENST00000400946 PCF11O94913 1555 aaKnown RBP12.75□□□□□ -0.37
LINC01139-201ENST00000400946 CAPN15O75808 1086 aa12.75□□□□□ -0.37
LINC01139-201ENST00000400946 SETD5Q9C0A6 1442 aa12.75□□□□□ -0.37
LINC01139-201ENST00000400946 ABCA5Q8WWZ7 1642 aa12.75□□□□□ -0.37
LINC01139-201ENST00000400946 DSG3P32926 999 aa12.72□□□□□ -0.37
LINC01139-201ENST00000400946 OSCARQ8IYS5 282 aa12.72□□□□□ -0.37
LINC01139-201ENST00000400946 TDRD9Q8NDG6 1382 aaKnown RBP12.71□□□□□ -0.37
LINC01139-201ENST00000400946 SAMD9Q5K651 1589 aa12.71□□□□□ -0.37
LINC01139-201ENST00000400946 RAB3GAP2Q9H2M9 1393 aa12.71□□□□□ -0.38
LINC01139-201ENST00000400946 SPINK5Q9NQ38 1064 aaPredicted RBP12.7□□□□□ -0.38
LINC01139-201ENST00000400946 MIER1Q8N108 512 aa12.69□□□□□ -0.38
LINC01139-201ENST00000400946 GTF3C3Q9Y5Q9 886 aa12.68□□□□□ -0.38
LINC01139-201ENST00000400946 PHLDB1Q86UU1 1377 aa12.68□□□□□ -0.38
LINC01139-201ENST00000400946 MAPKBP1O60336 1514 aa12.67□□□□□ -0.38
LINC01139-201ENST00000400946 GAPVD1Q14C86 1478 aa12.66□□□□□ -0.38
LINC01139-201ENST00000400946 SNAPC4Q5SXM2 1469 aa12.66□□□□□ -0.38
LINC01139-201ENST00000400946 FHOD3Q2V2M9 1422 aa12.64□□□□□ -0.39
LINC01139-201ENST00000400946 GRIN2BQ13224 1484 aa12.64□□□□□ -0.39
LINC01139-201ENST00000400946 CHD1O14646 1710 aa12.62□□□□□ -0.39
LINC01139-201ENST00000400946 FGD6Q6ZV73 1430 aa12.61□□□□□ -0.39
LINC01139-201ENST00000400946 CCDC18Q5T9S5 1454 aa12.61□□□□□ -0.39
LINC01139-201ENST00000400946 MAGI1Q96QZ7 1491 aaPredicted RBP12.61□□□□□ -0.39
LINC01139-201ENST00000400946 EHBP1L1Q8N3D4 1523 aa12.61□□□□□ -0.39
LINC01139-201ENST00000400946 PBRM1Q86U86 1689 aa12.59□□□□□ -0.39
LINC01139-201ENST00000400946 SUPT6HQ7KZ85 1726 aaKnown RBP12.59□□□□□ -0.39
LINC01139-201ENST00000400946 FBLN2P98095 1184 aa12.59□□□□□ -0.39
LINC01139-201ENST00000400946 ARHGEF11O15085 1522 aa12.57□□□□□ -0.4
LINC01139-201ENST00000400946 HFM1A2PYH4 1435 aa12.57□□□□□ -0.4
LINC01139-201ENST00000400946 MTUS2Q5JR59 1369 aa12.57□□□□□ -0.4
LINC01139-201ENST00000400946 CHMP7Q8WUX9 453 aaPredicted RBP12.57□□□□□ -0.4
LINC01139-201ENST00000400946 SYNJ2O15056 1496 aa12.56□□□□□ -0.4
LINC01139-201ENST00000400946 MYOM3Q5VTT5 1437 aa12.56□□□□□ -0.4
LINC01139-201ENST00000400946 FAM50AQ14320 339 aaKnown RBP12.56□□□□□ -0.4
LINC01139-201ENST00000400946 SP7Q8TDD2 431 aaPredicted RBP12.56□□□□□ -0.4
LINC01139-201ENST00000400946 AKNAQ7Z591 1439 aa12.55□□□□□ -0.4
LINC01139-201ENST00000400946 UACAQ9BZF9 1416 aa12.54□□□□□ -0.4
LINC01139-201ENST00000400946 LRRIQ1Q96JM4 1722 aa12.54□□□□□ -0.4
LINC01139-201ENST00000400946 HECW1Q76N89 1606 aa12.54□□□□□ -0.4
LINC01139-201ENST00000400946 KCNA4P22459 653 aa12.54□□□□□ -0.4
LINC01139-201ENST00000400946 ITGAEP38570 1179 aa12.54□□□□□ -0.4
LINC01139-201ENST00000400946 UGGT2Q9NYU1 1516 aa12.54□□□□□ -0.4
LINC01139-201ENST00000400946 TCOF1Q13428 1488 aaKnown RBP12.53□□□□□ -0.4
LINC01139-201ENST00000400946 NCOA2Q15596 1464 aa12.53□□□□□ -0.4
LINC01139-201ENST00000400946 PTPN23Q9H3S7 1636 aa12.52□□□□□ -0.4
LINC01139-201ENST00000400946 ADAMTS12P58397 1594 aa12.52□□□□□ -0.41
LINC01139-201ENST00000400946 IQGAP2Q13576 1575 aa12.52□□□□□ -0.41
LINC01139-201ENST00000400946 P3H3Q8IVL6 736 aa12.52□□□□□ -0.41
LINC01139-201ENST00000400946 RIMBP3CA6NJZ7 1639 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms