RNA–Protein interactions for RNA: ENST00000397511.6

SSR1-202, Transcript of signal sequence receptor subunit 1, humanhuman

TSL 5 BASIC

Gene SSR1, Length 3,248 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1-202ENST00000397511 SUPT16HQ9Y5B9 1047 aaKnown RBP7.24□□□□□ -1.25
SSR1-202ENST00000397511 PRXQ9BXM0 1461 aa7.24□□□□□ -1.25
SSR1-202ENST00000397511 HIRIP3Q9BW71 556 aaPredicted RBP7.24□□□□□ -1.25
SSR1-202ENST00000397511 DHX57Q6P158 1386 aaKnown RBP7.24□□□□□ -1.25
SSR1-202ENST00000397511 PPP6R1Q9UPN7 881 aa7.23□□□□□ -1.25
SSR1-202ENST00000397511 CUX2O14529 1486 aa7.23□□□□□ -1.25
SSR1-202ENST00000397511 ADRA2BP18089 450 aa7.23□□□□□ -1.25
SSR1-202ENST00000397511 PRDM2Q13029 1718 aa7.23□□□□□ -1.25
SSR1-202ENST00000397511 BIVM-ERCC5R4GMW8 1640 aa7.22□□□□□ -1.25
SSR1-202ENST00000397511 ARHGAP35Q9NRY4 1499 aa7.21□□□□□ -1.26
SSR1-202ENST00000397511 SIN3AQ96ST3 1273 aa7.21□□□□□ -1.26
SSR1-202ENST00000397511 CC2D2AQ9P2K1 1620 aa7.21□□□□□ -1.26
SSR1-202ENST00000397511 KCNH8Q96L42 1107 aa7.2□□□□□ -1.26
SSR1-202ENST00000397511 CFTRP13569 1480 aa7.2□□□□□ -1.26
SSR1-202ENST00000397511 CCNB3Q8WWL7 1395 aa7.2□□□□□ -1.26
SSR1-202ENST00000397511 IGF1RP08069 1367 aa7.2□□□□□ -1.26
SSR1-202ENST00000397511 AMER1Q5JTC6 1135 aaPredicted RBP7.2□□□□□ -1.26
SSR1-202ENST00000397511 ARXQ96QS3 562 aa7.19□□□□□ -1.26
SSR1-202ENST00000397511 ERICH3Q5RHP9 1530 aa7.19□□□□□ -1.26
SSR1-202ENST00000397511 CARMIL1Q5VZK9 1371 aa7.19□□□□□ -1.26
SSR1-202ENST00000397511 ARID3CA6NKF2 412 aa7.18□□□□□ -1.26
SSR1-202ENST00000397511 RAB3GAP2Q9H2M9 1393 aa7.17□□□□□ -1.26
SSR1-202ENST00000397511 FGD5Q6ZNL6 1462 aa7.17□□□□□ -1.26
SSR1-202ENST00000397511 CADPSQ9ULU8 1353 aa7.16□□□□□ -1.26
SSR1-202ENST00000397511 RAD54L2Q9Y4B4 1467 aa7.16□□□□□ -1.26
SSR1-202ENST00000397511 DNAJC5BQ9UF47 199 aa7.16□□□□□ -1.26
SSR1-202ENST00000397511 DDX10Q13206 875 aaKnown RBP7.16□□□□□ -1.26
SSR1-202ENST00000397511 NESP48681 1621 aa7.15□□□□□ -1.26
SSR1-202ENST00000397511 PHLDB1Q86UU1 1377 aa7.15□□□□□ -1.27
SSR1-202ENST00000397511 FHOD3Q2V2M9 1422 aa7.15□□□□□ -1.27
SSR1-202ENST00000397511 RRBP1Q9P2E9 1410 aaKnown RBP7.14□□□□□ -1.27
SSR1-202ENST00000397511 BCANQ96GW7 911 aa7.13□□□□□ -1.27
SSR1-202ENST00000397511 FANCD2Q9BXW9 1451 aa7.12□□□□□ -1.27
SSR1-202ENST00000397511 TDRD9Q8NDG6 1382 aaKnown RBP7.11□□□□□ -1.27
SSR1-202ENST00000397511 CHIC2Q9UKJ5 165 aa7.1□□□□□ -1.27
SSR1-202ENST00000397511 LAMC3Q9Y6N6 1575 aa7.1□□□□□ -1.27
SSR1-202ENST00000397511 MYT1LQ9UL68 1186 aa7.1□□□□□ -1.27
SSR1-202ENST00000397511 LRRC9Q6ZRR7 1453 aa7.1□□□□□ -1.27
SSR1-202ENST00000397511 SETD5Q9C0A6 1442 aa7.09□□□□□ -1.27
SSR1-202ENST00000397511 TIAM1Q13009 1591 aa7.09□□□□□ -1.27
SSR1-202ENST00000397511 TRIM52Q96A61 297 aa7.09□□□□□ -1.27
SSR1-202ENST00000397511 RBM19Q9Y4C8 960 aaKnown RBP7.08□□□□□ -1.28
SSR1-202ENST00000397511 MAPKBP1O60336 1514 aa7.07□□□□□ -1.28
SSR1-202ENST00000397511 PCF11O94913 1555 aaKnown RBP7.07□□□□□ -1.28
SSR1-202ENST00000397511 RRP7BPQ9NSQ0 103 aa7.07□□□□□ -1.28
SSR1-202ENST00000397511 POLA1P09884 1462 aaPredicted RBP7.07□□□□□ -1.28
SSR1-202ENST00000397511 WDR97A6NE52 1622 aa7.07□□□□□ -1.28
SSR1-202ENST00000397511 CNGB1Q14028 1251 aaPredicted RBP7.06□□□□□ -1.28
SSR1-202ENST00000397511 MTUS2Q5JR59 1369 aa7.06□□□□□ -1.28
SSR1-202ENST00000397511 FHAD1B1AJZ9 1412 aa7.06□□□□□ -1.28
SSR1-202ENST00000397511 TOPBP1Q92547 1522 aa7.04□□□□□ -1.28
SSR1-202ENST00000397511 KCNA4P22459 653 aa7.03□□□□□ -1.28
SSR1-202ENST00000397511 FKBP8Q14318 412 aa7.03□□□□□ -1.28
SSR1-202ENST00000397511 ANO8Q9HCE9 1232 aaPredicted RBP7.03□□□□□ -1.28
SSR1-202ENST00000397511 TIMELESSQ9UNS1 1208 aa7.03□□□□□ -1.28
SSR1-202ENST00000397511 TONSLQ96HA7 1378 aa7.03□□□□□ -1.28
SSR1-202ENST00000397511 PPP1R15AO75807 674 aaPredicted RBP7.02□□□□□ -1.29
SSR1-202ENST00000397511 PTPRKQ15262 1439 aa7.01□□□□□ -1.29
SSR1-202ENST00000397511 PDS5BQ9NTI5 1447 aa7.01□□□□□ -1.29
SSR1-202ENST00000397511 DNMBPQ6XZF7 1577 aa7.01□□□□□ -1.29
SSR1-202ENST00000397511 ANP32CO43423 234 aa7.01□□□□□ -1.29
SSR1-202ENST00000397511 NEFLP07196 543 aa7□□□□□ -1.29
SSR1-202ENST00000397511 DEKP35659 375 aaKnown RBP7□□□□□ -1.29
SSR1-202ENST00000397511 ERICH6BQ5W0A0 696 aa7□□□□□ -1.29
SSR1-202ENST00000397511 URB2Q14146 1524 aaKnown RBP7□□□□□ -1.29
SSR1-202ENST00000397511 ABCA10Q8WWZ4 1543 aa7□□□□□ -1.29
SSR1-202ENST00000397511 FANCIQ9NVI1 1328 aa7□□□□□ -1.29
SSR1-202ENST00000397511 SENP3-EIF4A1A0A087X0R7 540 aa6.99□□□□□ -1.29
SSR1-202ENST00000397511 IRX6P78412 446 aaPredicted RBP6.99□□□□□ -1.29
SSR1-202ENST00000397511 FGD6Q6ZV73 1430 aa6.99□□□□□ -1.29
SSR1-202ENST00000397511 CASKIN1Q8WXD9 1431 aa6.99□□□□□ -1.29
SSR1-202ENST00000397511 FBLN2P98095 1184 aa6.98□□□□□ -1.29
SSR1-202ENST00000397511 CCDC18Q5T9S5 1454 aa6.98□□□□□ -1.29
SSR1-202ENST00000397511 FMN1Q68DA7 1419 aa6.98□□□□□ -1.29
SSR1-202ENST00000397511 GAPVD1Q14C86 1478 aa6.98□□□□□ -1.29
SSR1-202ENST00000397511 FYCO1Q9BQS8 1478 aa6.98□□□□□ -1.29
SSR1-202ENST00000397511 AQRO60306 1485 aaKnown RBP eCLIP6.97□□□□□ -1.297e-15■■■■□ 23.4
SSR1-202ENST00000397511 POLR3GLQ9BT43 218 aa6.97□□□□□ -1.29
SSR1-202ENST00000397511 CFAP43Q8NDM7 1665 aa6.97□□□□□ -1.29
SSR1-202ENST00000397511 MAP3K1Q13233 1512 aa6.97□□□□□ -1.29
SSR1-202ENST00000397511 NCOA2Q15596 1464 aa6.96□□□□□ -1.29
SSR1-202ENST00000397511 ZNF777Q9ULD5 760 aaPredicted RBP6.96□□□□□ -1.29
SSR1-202ENST00000397511 ZNF326Q5BKZ1 582 aaKnown RBP6.96□□□□□ -1.3
SSR1-202ENST00000397511 ZNF644Q9H582 1327 aaPredicted RBP6.96□□□□□ -1.3
SSR1-202ENST00000397511 HNRNPUQ00839 825 aaKnown RBP eCLIP6.95□□□□□ -1.3
SSR1-202ENST00000397511 UBE2Q2Q8WVN8 375 aa6.95□□□□□ -1.3
SSR1-202ENST00000397511 CTTNBP2Q8WZ74 1663 aa6.95□□□□□ -1.3
SSR1-202ENST00000397511 SNAPC4Q5SXM2 1469 aa6.95□□□□□ -1.3
SSR1-202ENST00000397511 SALL2Q9Y467 1007 aaPredicted RBP6.94□□□□□ -1.3
SSR1-202ENST00000397511 EFCAB5A4FU69 1503 aa6.94□□□□□ -1.3
SSR1-202ENST00000397511 LRRIQ1Q96JM4 1722 aa6.94□□□□□ -1.3
SSR1-202ENST00000397511 NAIPQ13075 1403 aa6.94□□□□□ -1.3
SSR1-202ENST00000397511 MYOM3Q5VTT5 1437 aa6.94□□□□□ -1.3
SSR1-202ENST00000397511 HSPA5P11021 654 aaKnown RBP6.93□□□□□ -1.3
SSR1-202ENST00000397511 CDK13Q14004 1512 aaKnown RBP6.93□□□□□ -1.3
SSR1-202ENST00000397511 CUL7Q14999 1698 aa6.93□□□□□ -1.3
SSR1-202ENST00000397511 FAM9BQ8IZU0 186 aa6.93□□□□□ -1.3
SSR1-202ENST00000397511 CCDC184Q52MB2 194 aa6.93□□□□□ -1.3
SSR1-202ENST00000397511 MAGI3Q5TCQ9 1506 aa6.92□□□□□ -1.3
SSR1-202ENST00000397511 HFM1A2PYH4 1435 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms