RNA–Protein interactions for RNA: ENST00000395978.7

BDNF-203, Transcript of brain derived neurotrophic factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene BDNF, Length 3,988 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BDNF-203ENST00000395978 LAMC3Q9Y6N6 1575 aa9.22□□□□□ -0.93
BDNF-203ENST00000395978 CHIC2Q9UKJ5 165 aa9.21□□□□□ -0.93
BDNF-203ENST00000395978 DDX10Q13206 875 aaKnown RBP9.21□□□□□ -0.94
BDNF-203ENST00000395978 SYNJ1O43426 1573 aa9.2□□□□□ -0.94
BDNF-203ENST00000395978 ZNF777Q9ULD5 760 aaPredicted RBP9.2□□□□□ -0.94
BDNF-203ENST00000395978 CNGB1Q14028 1251 aaPredicted RBP9.19□□□□□ -0.94
BDNF-203ENST00000395978 IGF1RP08069 1367 aa9.18□□□□□ -0.94
BDNF-203ENST00000395978 MYT1LQ9UL68 1186 aa9.18□□□□□ -0.94
BDNF-203ENST00000395978 CHMP7Q8WUX9 453 aaPredicted RBP9.17□□□□□ -0.94
BDNF-203ENST00000395978 KIF21BO75037 1637 aa9.17□□□□□ -0.94
BDNF-203ENST00000395978 TDRD9Q8NDG6 1382 aaKnown RBP9.17□□□□□ -0.94
BDNF-203ENST00000395978 ZNF326Q5BKZ1 582 aaKnown RBP9.16□□□□□ -0.94
BDNF-203ENST00000395978 RRP7BPQ9NSQ0 103 aa9.16□□□□□ -0.94
BDNF-203ENST00000395978 PLPPR3Q6T4P5 718 aa9.15□□□□□ -0.94
BDNF-203ENST00000395978 SIN3AQ96ST3 1273 aa9.15□□□□□ -0.95
BDNF-203ENST00000395978 SETD5Q9C0A6 1442 aa9.14□□□□□ -0.95
BDNF-203ENST00000395978 PRXQ9BXM0 1461 aa9.13□□□□□ -0.95
BDNF-203ENST00000395978 TOP2BQ02880 1626 aa9.13□□□□□ -0.95
BDNF-203ENST00000395978 ERICH6Q7L0X2 663 aa9.13□□□□□ -0.95
BDNF-203ENST00000395978 TIMELESSQ9UNS1 1208 aa9.13□□□□□ -0.95
BDNF-203ENST00000395978 HIRIP3Q9BW71 556 aaPredicted RBP9.12□□□□□ -0.95
BDNF-203ENST00000395978 FMN1Q68DA7 1419 aa9.12□□□□□ -0.95
BDNF-203ENST00000395978 FGD5Q6ZNL6 1462 aa9.12□□□□□ -0.95
BDNF-203ENST00000395978 MYT1Q01538 1121 aa9.12□□□□□ -0.95
BDNF-203ENST00000395978 RAB3GAP2Q9H2M9 1393 aa9.12□□□□□ -0.95
BDNF-203ENST00000395978 ERICH3Q5RHP9 1530 aa9.11□□□□□ -0.95
BDNF-203ENST00000395978 BCANQ96GW7 911 aa9.11□□□□□ -0.95
BDNF-203ENST00000395978 ARHGAP35Q9NRY4 1499 aa9.11□□□□□ -0.95
BDNF-203ENST00000395978 FHOD3Q2V2M9 1422 aa9.1□□□□□ -0.95
BDNF-203ENST00000395978 DHX57Q6P158 1386 aaKnown RBP9.1□□□□□ -0.95
BDNF-203ENST00000395978 CUX1P39880 1505 aa9.1□□□□□ -0.95
BDNF-203ENST00000395978 MRC2Q9UBG0 1479 aa9.09□□□□□ -0.95
BDNF-203ENST00000395978 TOPBP1Q92547 1522 aa9.09□□□□□ -0.95
BDNF-203ENST00000395978 PRDM2Q13029 1718 aa9.08□□□□□ -0.96
BDNF-203ENST00000395978 TSPY4P0CV99 314 aa9.08□□□□□ -0.96
BDNF-203ENST00000395978 TSPY10P0CW01 314 aa9.08□□□□□ -0.96
BDNF-203ENST00000395978 SLC4A1APQ9BWU0 796 aaKnown RBP9.08□□□□□ -0.96
BDNF-203ENST00000395978 ARAP1Q96P48 1450 aa9.08□□□□□ -0.96
BDNF-203ENST00000395978 DNMBPQ6XZF7 1577 aa9.08□□□□□ -0.96
BDNF-203ENST00000395978 PLEKHD1A6NEE1 506 aa9.07□□□□□ -0.96
BDNF-203ENST00000395978 EIF4G2P78344 907 aaKnown RBP eCLIP9.07□□□□□ -0.96
BDNF-203ENST00000395978 CFDP1Q9UEE9 299 aaPredicted RBP9.07□□□□□ -0.96
BDNF-203ENST00000395978 RAD54L2Q9Y4B4 1467 aa9.06□□□□□ -0.96
BDNF-203ENST00000395978 URB2Q14146 1524 aaKnown RBP9.04□□□□□ -0.96
BDNF-203ENST00000395978 HNRNPUQ00839 825 aaKnown RBP eCLIP9.04□□□□□ -0.96
BDNF-203ENST00000395978 BIVM-ERCC5R4GMW8 1640 aa9.04□□□□□ -0.96
BDNF-203ENST00000395978 FKBP8Q14318 412 aa9.04□□□□□ -0.96
BDNF-203ENST00000395978 POLA1P09884 1462 aaPredicted RBP9.03□□□□□ -0.96
BDNF-203ENST00000395978 PPP1R15AO75807 674 aaPredicted RBP9.02□□□□□ -0.97
BDNF-203ENST00000395978 KIF21AQ7Z4S6 1674 aa9.02□□□□□ -0.97
BDNF-203ENST00000395978 RRBP1Q9P2E9 1410 aaKnown RBP9.01□□□□□ -0.97
BDNF-203ENST00000395978 GAPVD1Q14C86 1478 aa9.01□□□□□ -0.97
BDNF-203ENST00000395978 LRRC9Q6ZRR7 1453 aa8.99□□□□□ -0.97
BDNF-203ENST00000395978 PHLDB1Q86UU1 1377 aa8.99□□□□□ -0.97
BDNF-203ENST00000395978 FAM9BQ8IZU0 186 aa8.99□□□□□ -0.97
BDNF-203ENST00000395978 IFT140Q96RY7 1462 aa8.99□□□□□ -0.97
BDNF-203ENST00000395978 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.98□□□□□ -0.97
BDNF-203ENST00000395978 MRS2Q9HD23 443 aa8.98□□□□□ -0.97
BDNF-203ENST00000395978 KDM2AQ9Y2K7 1162 aa8.98□□□□□ -0.97
BDNF-203ENST00000395978 ABCA10Q8WWZ4 1543 aa8.97□□□□□ -0.97
BDNF-203ENST00000395978 CASKIN1Q8WXD9 1431 aa8.96□□□□□ -0.97
BDNF-203ENST00000395978 DAXXQ9UER7 740 aaPredicted RBP8.96□□□□□ -0.97
BDNF-203ENST00000395978 MPHOSPH9Q99550 1183 aa8.96□□□□□ -0.98
BDNF-203ENST00000395978 CARMIL2Q6F5E8 1435 aa8.95□□□□□ -0.98
BDNF-203ENST00000395978 CCER2I3L3R5 266 aa8.95□□□□□ -0.98
BDNF-203ENST00000395978 KCNH8Q96L42 1107 aa8.95□□□□□ -0.98
BDNF-203ENST00000395978 AQRO60306 1485 aaKnown RBP eCLIP8.94□□□□□ -0.98
BDNF-203ENST00000395978 WDR62O43379 1518 aa8.94□□□□□ -0.98
BDNF-203ENST00000395978 FGD6Q6ZV73 1430 aa8.94□□□□□ -0.98
BDNF-203ENST00000395978 RTN4Q9NQC3 1192 aaKnown RBP8.94□□□□□ -0.98
BDNF-203ENST00000395978 TMC1Q8TDI8 760 aa8.93□□□□□ -0.98
BDNF-203ENST00000395978 FOXD1Q16676 465 aa8.93□□□□□ -0.98
BDNF-203ENST00000395978 HSPA5P11021 654 aaKnown RBP8.92□□□□□ -0.98
BDNF-203ENST00000395978 JPH4Q96JJ6 628 aa8.92□□□□□ -0.98
BDNF-203ENST00000395978 CCDC18Q5T9S5 1454 aa8.92□□□□□ -0.98
BDNF-203ENST00000395978 FYCO1Q9BQS8 1478 aa8.92□□□□□ -0.98
BDNF-203ENST00000395978 GRIN2BQ13224 1484 aa8.92□□□□□ -0.98
BDNF-203ENST00000395978 SUPT16HQ9Y5B9 1047 aaKnown RBP8.91□□□□□ -0.98
BDNF-203ENST00000395978 MYOM3Q5VTT5 1437 aa8.91□□□□□ -0.98
BDNF-203ENST00000395978 NPM1P06748 294 aaKnown RBP eCLIP8.9□□□□□ -0.98
BDNF-203ENST00000395978 EFCAB5A4FU69 1503 aa8.9□□□□□ -0.98
BDNF-203ENST00000395978 TIAM1Q13009 1591 aa8.9□□□□□ -0.98
BDNF-203ENST00000395978 RGL3Q3MIN7 710 aa8.9□□□□□ -0.99
BDNF-203ENST00000395978 L3MBTL2Q969R5 705 aa8.9□□□□□ -0.99
BDNF-203ENST00000395978 CARD11Q9BXL7 1154 aa8.9□□□□□ -0.99
BDNF-203ENST00000395978 PKD2Q13563 968 aa8.89□□□□□ -0.99
BDNF-203ENST00000395978 ZNF608Q9ULD9 1512 aaPredicted RBP8.88□□□□□ -0.99
BDNF-203ENST00000395978 NCOA2Q15596 1464 aa8.88□□□□□ -0.99
BDNF-203ENST00000395978 ANKRD30AQ9BXX3 1397 aa8.87□□□□□ -0.99
BDNF-203ENST00000395978 MAP3K1Q13233 1512 aa8.87□□□□□ -0.99
BDNF-203ENST00000395978 THOC2Q8NI27 1593 aaKnown RBP8.87□□□□□ -0.99
BDNF-203ENST00000395978 UACAQ9BZF9 1416 aa8.87□□□□□ -0.99
BDNF-203ENST00000395978 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.86□□□□□ -0.99
BDNF-203ENST00000395978 IRX6P78412 446 aaPredicted RBP8.86□□□□□ -0.99
BDNF-203ENST00000395978 TARBP1Q13395 1621 aaKnown RBP8.85□□□□□ -0.99
BDNF-203ENST00000395978 NUP155O75694 1391 aa8.85□□□□□ -0.99
BDNF-203ENST00000395978 CHGAP10645 457 aaKnown RBP8.85□□□□□ -0.99
BDNF-203ENST00000395978 DCAF11Q8TEB1 546 aa8.85□□□□□ -0.99
BDNF-203ENST00000395978 SALL2Q9Y467 1007 aaPredicted RBP8.84□□□□□ -0.99
BDNF-203ENST00000395978 CUL7Q14999 1698 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms