RNA–Protein interactions for RNA: ENST00000394804.6

UBE2D3-209, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene UBE2D3, Length 4,166 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-209ENST00000394804 SYNJ1O43426 1573 aa16.44■□□□□ 0.22
UBE2D3-209ENST00000394804 DNMBPQ6XZF7 1577 aa16.44■□□□□ 0.22
UBE2D3-209ENST00000394804 WDR62O43379 1518 aa16.44■□□□□ 0.22
UBE2D3-209ENST00000394804 DDX10Q13206 875 aaKnown RBP16.43■□□□□ 0.22
UBE2D3-209ENST00000394804 KANK4Q5T7N3 995 aaPredicted RBP16.42■□□□□ 0.22
UBE2D3-209ENST00000394804 POLA1P09884 1462 aaPredicted RBP16.41■□□□□ 0.22
UBE2D3-209ENST00000394804 KIF21BO75037 1637 aa16.41■□□□□ 0.22
UBE2D3-209ENST00000394804 TDRD9Q8NDG6 1382 aaKnown RBP16.4■□□□□ 0.22
UBE2D3-209ENST00000394804 TRIM52Q96A61 297 aa16.39■□□□□ 0.21
UBE2D3-209ENST00000394804 TONSLQ96HA7 1378 aa16.38■□□□□ 0.21
UBE2D3-209ENST00000394804 CUX2O14529 1486 aa16.37■□□□□ 0.21
UBE2D3-209ENST00000394804 TOP2BQ02880 1626 aa16.34■□□□□ 0.21
UBE2D3-209ENST00000394804 FBLN2P98095 1184 aa16.34■□□□□ 0.21
UBE2D3-209ENST00000394804 AQRO60306 1485 aaKnown RBP eCLIP16.33■□□□□ 0.212e-7■■■■□ 25.1
UBE2D3-209ENST00000394804 DHX57Q6P158 1386 aaKnown RBP16.33■□□□□ 0.2
UBE2D3-209ENST00000394804 ZNF608Q9ULD9 1512 aaPredicted RBP16.33■□□□□ 0.2
UBE2D3-209ENST00000394804 FKBP8Q14318 412 aa16.33■□□□□ 0.2
UBE2D3-209ENST00000394804 IFT140Q96RY7 1462 aa16.3■□□□□ 0.2
UBE2D3-209ENST00000394804 CARMIL1Q5VZK9 1371 aa16.29■□□□□ 0.2
UBE2D3-209ENST00000394804 MTUS2Q5JR59 1369 aa16.29■□□□□ 0.2
UBE2D3-209ENST00000394804 FHAD1B1AJZ9 1412 aa16.29■□□□□ 0.2
UBE2D3-209ENST00000394804 POLR3GLQ9BT43 218 aa16.28■□□□□ 0.2
UBE2D3-209ENST00000394804 SUPT16HQ9Y5B9 1047 aaKnown RBP16.27■□□□□ 0.19
UBE2D3-209ENST00000394804 BIVM-ERCC5R4GMW8 1640 aa16.26■□□□□ 0.19
UBE2D3-209ENST00000394804 SETD5Q9C0A6 1442 aa16.24■□□□□ 0.19
UBE2D3-209ENST00000394804 SIN3AQ96ST3 1273 aa16.24■□□□□ 0.19
UBE2D3-209ENST00000394804 RAB3GAP2Q9H2M9 1393 aa16.24■□□□□ 0.19
UBE2D3-209ENST00000394804 HIRIP3Q9BW71 556 aaPredicted RBP16.24■□□□□ 0.19
UBE2D3-209ENST00000394804 ERICH3Q5RHP9 1530 aa16.21■□□□□ 0.19
UBE2D3-209ENST00000394804 CNGB1Q14028 1251 aaPredicted RBP16.2■□□□□ 0.18
UBE2D3-209ENST00000394804 TIMELESSQ9UNS1 1208 aa16.2■□□□□ 0.18
UBE2D3-209ENST00000394804 TARBP1Q13395 1621 aaKnown RBP16.2■□□□□ 0.18
UBE2D3-209ENST00000394804 GAPVD1Q14C86 1478 aa16.2■□□□□ 0.18
UBE2D3-209ENST00000394804 CDK11AQ9UQ88 783 aaPredicted RBP16.19■□□□□ 0.18
UBE2D3-209ENST00000394804 ABCA10Q8WWZ4 1543 aa16.19■□□□□ 0.18
UBE2D3-209ENST00000394804 CHMP7Q8WUX9 453 aaPredicted RBP16.18■□□□□ 0.18
UBE2D3-209ENST00000394804 HNRNPUQ00839 825 aaKnown RBP eCLIP16.18■□□□□ 0.18
UBE2D3-209ENST00000394804 PRXQ9BXM0 1461 aa16.16■□□□□ 0.18
UBE2D3-209ENST00000394804 EIF4G3O43432 1585 aaKnown RBP16.15■□□□□ 0.18
UBE2D3-209ENST00000394804 ARID3CA6NKF2 412 aa16.15■□□□□ 0.18
UBE2D3-209ENST00000394804 CHIC2Q9UKJ5 165 aa16.14■□□□□ 0.17
UBE2D3-209ENST00000394804 ARAP1Q96P48 1450 aa16.13■□□□□ 0.17
UBE2D3-209ENST00000394804 ARHGAP35Q9NRY4 1499 aa16.13■□□□□ 0.17
UBE2D3-209ENST00000394804 GRIN2BQ13224 1484 aa16.11■□□□□ 0.17
UBE2D3-209ENST00000394804 SNAPC4Q5SXM2 1469 aa16.11■□□□□ 0.17
UBE2D3-209ENST00000394804 RRBP1Q9P2E9 1410 aaKnown RBP16.11■□□□□ 0.17
UBE2D3-209ENST00000394804 IGF1RP08069 1367 aa16.09■□□□□ 0.17
UBE2D3-209ENST00000394804 ZNF326Q5BKZ1 582 aaKnown RBP16.08■□□□□ 0.16
UBE2D3-209ENST00000394804 RRP7BPQ9NSQ0 103 aa16.08■□□□□ 0.16
UBE2D3-209ENST00000394804 CCER2I3L3R5 266 aa16.06■□□□□ 0.16
UBE2D3-209ENST00000394804 EIF4G2P78344 907 aaKnown RBP eCLIP16.06■□□□□ 0.16
UBE2D3-209ENST00000394804 WDR97A6NE52 1622 aa16.04■□□□□ 0.16
UBE2D3-209ENST00000394804 ABCA5Q8WWZ7 1642 aa16.03■□□□□ 0.16
UBE2D3-209ENST00000394804 PPP1R15AO75807 674 aaPredicted RBP16.03■□□□□ 0.16
UBE2D3-209ENST00000394804 FHOD3Q2V2M9 1422 aa16.03■□□□□ 0.16
UBE2D3-209ENST00000394804 FMN1Q68DA7 1419 aa16.02■□□□□ 0.16
UBE2D3-209ENST00000394804 OSCARQ8IYS5 282 aa16.01■□□□□ 0.15
UBE2D3-209ENST00000394804 FAM9BQ8IZU0 186 aa16.01■□□□□ 0.15
UBE2D3-209ENST00000394804 PBRM1Q86U86 1689 aa15.99■□□□□ 0.15
UBE2D3-209ENST00000394804 KCNH8Q96L42 1107 aa15.98■□□□□ 0.15
UBE2D3-209ENST00000394804 ANP32EQ9BTT0 268 aa15.98■□□□□ 0.15
UBE2D3-209ENST00000394804 MRS2Q9HD23 443 aa15.98■□□□□ 0.15
UBE2D3-209ENST00000394804 LRRC9Q6ZRR7 1453 aa15.97■□□□□ 0.15
UBE2D3-209ENST00000394804 MAGI1Q96QZ7 1491 aaPredicted RBP15.97■□□□□ 0.15
UBE2D3-209ENST00000394804 ZNF777Q9ULD5 760 aaPredicted RBP15.97■□□□□ 0.15
UBE2D3-209ENST00000394804 TSHZ2Q9NRE2 1034 aa15.96■□□□□ 0.15
UBE2D3-209ENST00000394804 PHLDB1Q86UU1 1377 aa15.96■□□□□ 0.15
UBE2D3-209ENST00000394804 SYNJ2O15056 1496 aa15.96■□□□□ 0.15
UBE2D3-209ENST00000394804 IRX6P78412 446 aaPredicted RBP15.95■□□□□ 0.14
UBE2D3-209ENST00000394804 SLC4A1APQ9BWU0 796 aaKnown RBP15.92■□□□□ 0.14
UBE2D3-209ENST00000394804 ADAMTS12P58397 1594 aa15.91■□□□□ 0.14
UBE2D3-209ENST00000394804 GRIN2AQ12879 1464 aa15.9■□□□□ 0.14
UBE2D3-209ENST00000394804 TIAM1Q13009 1591 aa15.9■□□□□ 0.14
UBE2D3-209ENST00000394804 CHD1O14646 1710 aa15.88■□□□□ 0.13
UBE2D3-209ENST00000394804 RTL5Q5HYW3 569 aaPredicted RBP15.87■□□□□ 0.13
UBE2D3-209ENST00000394804 HSPA5P11021 654 aaKnown RBP15.87■□□□□ 0.13
UBE2D3-209ENST00000394804 CCDC18Q5T9S5 1454 aa15.86■□□□□ 0.13
UBE2D3-209ENST00000394804 CUL7Q14999 1698 aa15.85■□□□□ 0.13
UBE2D3-209ENST00000394804 FGD6Q6ZV73 1430 aa15.84■□□□□ 0.13
UBE2D3-209ENST00000394804 CASKIN1Q8WXD9 1431 aa15.83■□□□□ 0.12
UBE2D3-209ENST00000394804 JPH4Q96JJ6 628 aa15.83■□□□□ 0.12
UBE2D3-209ENST00000394804 RBM19Q9Y4C8 960 aaKnown RBP15.82■□□□□ 0.12
UBE2D3-209ENST00000394804 TMC1Q8TDI8 760 aa15.82■□□□□ 0.12
UBE2D3-209ENST00000394804 FYCO1Q9BQS8 1478 aa15.82■□□□□ 0.12
UBE2D3-209ENST00000394804 MAP3K1Q13233 1512 aa15.81■□□□□ 0.12
UBE2D3-209ENST00000394804 ANP32AP39687 249 aaKnown RBP15.81■□□□□ 0.12
UBE2D3-209ENST00000394804 DAXXQ9UER7 740 aaPredicted RBP15.81■□□□□ 0.12
UBE2D3-209ENST00000394804 PPP4R2Q9NY27 417 aa15.8■□□□□ 0.12
UBE2D3-209ENST00000394804 CCDC136Q96JN2 1154 aa15.79■□□□□ 0.12
UBE2D3-209ENST00000394804 MPHOSPH9Q99550 1183 aa15.79■□□□□ 0.12
UBE2D3-209ENST00000394804 CEP170Q5SW79 1584 aa15.78■□□□□ 0.12
UBE2D3-209ENST00000394804 UACAQ9BZF9 1416 aa15.78■□□□□ 0.12
UBE2D3-209ENST00000394804 CFDP1Q9UEE9 299 aaPredicted RBP15.78■□□□□ 0.12
UBE2D3-209ENST00000394804 EFCAB5A4FU69 1503 aa15.77■□□□□ 0.11
UBE2D3-209ENST00000394804 TSPY4P0CV99 314 aa15.76■□□□□ 0.11
UBE2D3-209ENST00000394804 TSPY10P0CW01 314 aa15.76■□□□□ 0.11
UBE2D3-209ENST00000394804 MYT1LQ9UL68 1186 aa15.76■□□□□ 0.11
UBE2D3-209ENST00000394804 NUP160Q12769 1436 aa15.75■□□□□ 0.11
UBE2D3-209ENST00000394804 MYOM3Q5VTT5 1437 aa15.75■□□□□ 0.11
UBE2D3-209ENST00000394804 FOXD1Q16676 465 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms