RNA–Protein interactions for RNA: ENST00000381578.6_PAR_Y

SHOX-203, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SHOX, Length 3,757 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-203ENST00000381578_PAR_Y RTN4Q9NQC3 1192 aaKnown RBP16.94■□□□□ 0.3
SHOX-203ENST00000381578_PAR_Y SIN3AQ96ST3 1273 aa16.93■□□□□ 0.3
SHOX-203ENST00000381578_PAR_Y FANCD2Q9BXW9 1451 aa16.93■□□□□ 0.3
SHOX-203ENST00000381578_PAR_Y SENP3-EIF4A1A0A087X0R7 540 aa16.92■□□□□ 0.3
SHOX-203ENST00000381578_PAR_Y TOP2BQ02880 1626 aa16.92■□□□□ 0.3
SHOX-203ENST00000381578_PAR_Y DEKP35659 375 aaKnown RBP16.92■□□□□ 0.3
SHOX-203ENST00000381578_PAR_Y NESP48681 1621 aa16.91■□□□□ 0.3
SHOX-203ENST00000381578_PAR_Y CUX1P39880 1505 aa16.91■□□□□ 0.3
SHOX-203ENST00000381578_PAR_Y CUX2O14529 1486 aa16.9■□□□□ 0.3
SHOX-203ENST00000381578_PAR_Y NPM2Q86SE8 214 aaKnown RBP16.88■□□□□ 0.29
SHOX-203ENST00000381578_PAR_Y RAPGEF2Q9Y4G8 1499 aa16.87■□□□□ 0.29
SHOX-203ENST00000381578_PAR_Y FAM9BQ8IZU0 186 aa16.86■□□□□ 0.29
SHOX-203ENST00000381578_PAR_Y PDS5BQ9NTI5 1447 aa16.84■□□□□ 0.29
SHOX-203ENST00000381578_PAR_Y B4GALNT3Q6L9W6 998 aa16.83■□□□□ 0.29
SHOX-203ENST00000381578_PAR_Y AEBP2Q6ZN18 517 aaPredicted RBP16.83■□□□□ 0.28
SHOX-203ENST00000381578_PAR_Y KANK4Q5T7N3 995 aaPredicted RBP16.83■□□□□ 0.28
SHOX-203ENST00000381578_PAR_Y EIF5BO60841 1220 aaKnown RBP16.82■□□□□ 0.28
SHOX-203ENST00000381578_PAR_Y P3H3Q8IVL6 736 aa16.82■□□□□ 0.28
SHOX-203ENST00000381578_PAR_Y FGD5Q6ZNL6 1462 aa16.81■□□□□ 0.28
SHOX-203ENST00000381578_PAR_Y MSH5O43196 834 aa16.8■□□□□ 0.28
SHOX-203ENST00000381578_PAR_Y DHX57Q6P158 1386 aaKnown RBP16.78■□□□□ 0.28
SHOX-203ENST00000381578_PAR_Y BIVM-ERCC5R4GMW8 1640 aa16.78■□□□□ 0.28
SHOX-203ENST00000381578_PAR_Y ANP32AP39687 249 aaKnown RBP16.77■□□□□ 0.28
SHOX-203ENST00000381578_PAR_Y CARMIL1Q5VZK9 1371 aa16.76■□□□□ 0.27
SHOX-203ENST00000381578_PAR_Y CCDC136Q96JN2 1154 aa16.76■□□□□ 0.27
SHOX-203ENST00000381578_PAR_Y PRKCSHP14314 528 aaPredicted RBP16.75■□□□□ 0.27
SHOX-203ENST00000381578_PAR_Y KIF21BO75037 1637 aa16.74■□□□□ 0.27
SHOX-203ENST00000381578_PAR_Y RAD54L2Q9Y4B4 1467 aa16.73■□□□□ 0.27
SHOX-203ENST00000381578_PAR_Y ZBTB4Q9P1Z0 1013 aaPredicted RBP16.71■□□□□ 0.27
SHOX-203ENST00000381578_PAR_Y IGF1RP08069 1367 aa16.71■□□□□ 0.27
SHOX-203ENST00000381578_PAR_Y TDRD9Q8NDG6 1382 aaKnown RBP16.71■□□□□ 0.26
SHOX-203ENST00000381578_PAR_Y ZBTB47Q9UFB7 747 aaPredicted RBP16.7■□□□□ 0.26
SHOX-203ENST00000381578_PAR_Y ANO8Q9HCE9 1232 aaPredicted RBP16.69■□□□□ 0.26
SHOX-203ENST00000381578_PAR_Y NOP58Q9Y2X3 529 aaKnown RBP16.69■□□□□ 0.26
SHOX-203ENST00000381578_PAR_Y TOPBP1Q92547 1522 aa16.69■□□□□ 0.26
SHOX-203ENST00000381578_PAR_Y MYT1LQ9UL68 1186 aa16.68■□□□□ 0.26
SHOX-203ENST00000381578_PAR_Y LAMC3Q9Y6N6 1575 aa16.68■□□□□ 0.26
SHOX-203ENST00000381578_PAR_Y PRXQ9BXM0 1461 aa16.67■□□□□ 0.26
SHOX-203ENST00000381578_PAR_Y VPS8Q8N3P4 1428 aa16.67■□□□□ 0.26
SHOX-203ENST00000381578_PAR_Y TONSLQ96HA7 1378 aa16.67■□□□□ 0.26
SHOX-203ENST00000381578_PAR_Y DAXXQ9UER7 740 aaPredicted RBP16.66■□□□□ 0.26
SHOX-203ENST00000381578_PAR_Y MRS2Q9HD23 443 aa16.65■□□□□ 0.26
SHOX-203ENST00000381578_PAR_Y DNMBPQ6XZF7 1577 aa16.65■□□□□ 0.26
SHOX-203ENST00000381578_PAR_Y POLA1P09884 1462 aaPredicted RBP16.64■□□□□ 0.26
SHOX-203ENST00000381578_PAR_Y ERCC6Q03468 1493 aa16.64■□□□□ 0.25
SHOX-203ENST00000381578_PAR_Y LAS1LQ9Y4W2 734 aaKnown RBP16.64■□□□□ 0.25
SHOX-203ENST00000381578_PAR_Y PRDM2Q13029 1718 aa16.64■□□□□ 0.25
SHOX-203ENST00000381578_PAR_Y PPP4R2Q9NY27 417 aa16.63■□□□□ 0.25
SHOX-203ENST00000381578_PAR_Y SALL2Q9Y467 1007 aaPredicted RBP16.62■□□□□ 0.25
SHOX-203ENST00000381578_PAR_Y ERICH3Q5RHP9 1530 aa16.61■□□□□ 0.25
SHOX-203ENST00000381578_PAR_Y ZNF326Q5BKZ1 582 aaKnown RBP16.59■□□□□ 0.25
SHOX-203ENST00000381578_PAR_Y FBLN2P98095 1184 aa16.58■□□□□ 0.25
SHOX-203ENST00000381578_PAR_Y URB2Q14146 1524 aaKnown RBP16.58■□□□□ 0.24
SHOX-203ENST00000381578_PAR_Y FANCIQ9NVI1 1328 aa16.57■□□□□ 0.24
SHOX-203ENST00000381578_PAR_Y CCNB3Q8WWL7 1395 aa16.57■□□□□ 0.24
SHOX-203ENST00000381578_PAR_Y CCER2I3L3R5 266 aa16.57■□□□□ 0.24
SHOX-203ENST00000381578_PAR_Y RAB3GAP2Q9H2M9 1393 aa16.57■□□□□ 0.24
SHOX-203ENST00000381578_PAR_Y ARID3CA6NKF2 412 aa16.56■□□□□ 0.24
SHOX-203ENST00000381578_PAR_Y PAK3O75914 559 aaPredicted RBP16.53■□□□□ 0.24
SHOX-203ENST00000381578_PAR_Y ABCA10Q8WWZ4 1543 aa16.52■□□□□ 0.24
SHOX-203ENST00000381578_PAR_Y GAPVD1Q14C86 1478 aa16.52■□□□□ 0.23
SHOX-203ENST00000381578_PAR_Y NEFMP07197 916 aa16.5■□□□□ 0.23
SHOX-203ENST00000381578_PAR_Y CHIC2Q9UKJ5 165 aa16.5■□□□□ 0.23
SHOX-203ENST00000381578_PAR_Y IL27Q8NEV9 243 aa16.48■□□□□ 0.23
SHOX-203ENST00000381578_PAR_Y MRC2Q9UBG0 1479 aa16.48■□□□□ 0.23
SHOX-203ENST00000381578_PAR_Y PPP1R15AO75807 674 aaPredicted RBP16.48■□□□□ 0.23
SHOX-203ENST00000381578_PAR_Y ARAP1Q96P48 1450 aa16.46■□□□□ 0.23
SHOX-203ENST00000381578_PAR_Y AQRO60306 1485 aaKnown RBP eCLIP16.45■□□□□ 0.22
SHOX-203ENST00000381578_PAR_Y KIF21AQ7Z4S6 1674 aa16.44■□□□□ 0.22
SHOX-203ENST00000381578_PAR_Y ARXQ96QS3 562 aa16.44■□□□□ 0.22
SHOX-203ENST00000381578_PAR_Y CHMP7Q8WUX9 453 aaPredicted RBP16.44■□□□□ 0.22
SHOX-203ENST00000381578_PAR_Y ARHGAP35Q9NRY4 1499 aa16.43■□□□□ 0.22
SHOX-203ENST00000381578_PAR_Y FHOD3Q2V2M9 1422 aa16.41■□□□□ 0.22
SHOX-203ENST00000381578_PAR_Y FHAD1B1AJZ9 1412 aa16.4■□□□□ 0.22
SHOX-203ENST00000381578_PAR_Y EIF4G2P78344 907 aaKnown RBP eCLIP16.4■□□□□ 0.22
SHOX-203ENST00000381578_PAR_Y RRP7BPQ9NSQ0 103 aa16.39■□□□□ 0.21
SHOX-203ENST00000381578_PAR_Y SETD5Q9C0A6 1442 aa16.38■□□□□ 0.21
SHOX-203ENST00000381578_PAR_Y IPO9Q96P70 1041 aaKnown RBP16.37■□□□□ 0.21
SHOX-203ENST00000381578_PAR_Y HSPA5P11021 654 aaKnown RBP16.37■□□□□ 0.21
SHOX-203ENST00000381578_PAR_Y CCDC184Q52MB2 194 aa16.34■□□□□ 0.21
SHOX-203ENST00000381578_PAR_Y TMC1Q8TDI8 760 aa16.34■□□□□ 0.21
SHOX-203ENST00000381578_PAR_Y IFT140Q96RY7 1462 aa16.32■□□□□ 0.2
SHOX-203ENST00000381578_PAR_Y CUL7Q14999 1698 aa16.32■□□□□ 0.2
SHOX-203ENST00000381578_PAR_Y MTUS2Q5JR59 1369 aa16.31■□□□□ 0.2
SHOX-203ENST00000381578_PAR_Y GRIN2BQ13224 1484 aa16.31■□□□□ 0.2
SHOX-203ENST00000381578_PAR_Y FOXD1Q16676 465 aa16.29■□□□□ 0.2
SHOX-203ENST00000381578_PAR_Y FMN1Q68DA7 1419 aa16.28■□□□□ 0.2
SHOX-203ENST00000381578_PAR_Y ZNF608Q9ULD9 1512 aaPredicted RBP16.28■□□□□ 0.2
SHOX-203ENST00000381578_PAR_Y SLC4A3P48751 1232 aa16.26■□□□□ 0.19
SHOX-203ENST00000381578_PAR_Y WDR97A6NE52 1622 aa16.25■□□□□ 0.19
SHOX-203ENST00000381578_PAR_Y ERICH6BQ5W0A0 696 aa16.25■□□□□ 0.19
SHOX-203ENST00000381578_PAR_Y TIMELESSQ9UNS1 1208 aa16.24■□□□□ 0.19
SHOX-203ENST00000381578_PAR_Y ABCA5Q8WWZ7 1642 aa16.22■□□□□ 0.19
SHOX-203ENST00000381578_PAR_Y BRPF3Q9ULD4 1205 aa16.21■□□□□ 0.19
SHOX-203ENST00000381578_PAR_Y EFCAB5A4FU69 1503 aa16.2■□□□□ 0.18
SHOX-203ENST00000381578_PAR_Y TARBP1Q13395 1621 aaKnown RBP16.2■□□□□ 0.18
SHOX-203ENST00000381578_PAR_Y SNAPC4Q5SXM2 1469 aa16.2■□□□□ 0.18
SHOX-203ENST00000381578_PAR_Y PPM1GO15355 546 aaPredicted RBP16.2■□□□□ 0.18
SHOX-203ENST00000381578_PAR_Y PRKRIP1Q9H875 184 aaPredicted RBP16.18■□□□□ 0.18
SHOX-203ENST00000381578_PAR_Y WDR62O43379 1518 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms