RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 CARMIL1Q5VZK9 1371 aa20.84■□□□□ 0.93
CLCNKA-202ENST00000375692 TARBP1Q13395 1621 aaKnown RBP20.83■□□□□ 0.93
CLCNKA-202ENST00000375692 AQRO60306 1485 aaKnown RBP eCLIP20.83■□□□□ 0.92
CLCNKA-202ENST00000375692 THOC2Q8NI27 1593 aaKnown RBP20.82■□□□□ 0.92
CLCNKA-202ENST00000375692 GAPVD1Q14C86 1478 aa20.79■□□□□ 0.92
CLCNKA-202ENST00000375692 WDR97A6NE52 1622 aa20.79■□□□□ 0.92
CLCNKA-202ENST00000375692 ZNF608Q9ULD9 1512 aaPredicted RBP20.79■□□□□ 0.92
CLCNKA-202ENST00000375692 ERICH3Q5RHP9 1530 aa20.75■□□□□ 0.91
CLCNKA-202ENST00000375692 ABCA5Q8WWZ7 1642 aa20.73■□□□□ 0.91
CLCNKA-202ENST00000375692 IFT140Q96RY7 1462 aa20.72■□□□□ 0.91
CLCNKA-202ENST00000375692 MYT1Q01538 1121 aa20.68■□□□□ 0.9
CLCNKA-202ENST00000375692 DHX57Q6P158 1386 aaKnown RBP20.65■□□□□ 0.9
CLCNKA-202ENST00000375692 KANK4Q5T7N3 995 aaPredicted RBP20.65■□□□□ 0.9
CLCNKA-202ENST00000375692 GRIN2BQ13224 1484 aa20.6■□□□□ 0.89
CLCNKA-202ENST00000375692 CUL7Q14999 1698 aa20.58■□□□□ 0.89
CLCNKA-202ENST00000375692 CLSPNQ9HAW4 1339 aa20.57■□□□□ 0.88
CLCNKA-202ENST00000375692 EIF4G3O43432 1585 aaKnown RBP20.57■□□□□ 0.88
CLCNKA-202ENST00000375692 PBRM1Q86U86 1689 aa20.56■□□□□ 0.88
CLCNKA-202ENST00000375692 ARAP1Q96P48 1450 aa20.56■□□□□ 0.88
CLCNKA-202ENST00000375692 P3H3Q8IVL6 736 aa20.55■□□□□ 0.88
CLCNKA-202ENST00000375692 FHAD1B1AJZ9 1412 aa20.53■□□□□ 0.88
CLCNKA-202ENST00000375692 SNAPC4Q5SXM2 1469 aa20.52■□□□□ 0.88
CLCNKA-202ENST00000375692 FBLN2P98095 1184 aa20.52■□□□□ 0.88
CLCNKA-202ENST00000375692 SUPT16HQ9Y5B9 1047 aaKnown RBP20.49■□□□□ 0.87
CLCNKA-202ENST00000375692 ARHGAP35Q9NRY4 1499 aa20.49■□□□□ 0.87
CLCNKA-202ENST00000375692 ITGAEP38570 1179 aa20.48■□□□□ 0.87
CLCNKA-202ENST00000375692 ADAMTS12P58397 1594 aa20.47■□□□□ 0.87
CLCNKA-202ENST00000375692 CHMP7Q8WUX9 453 aaPredicted RBP20.45■□□□□ 0.86
CLCNKA-202ENST00000375692 RRBP1Q9P2E9 1410 aaKnown RBP20.43■□□□□ 0.86
CLCNKA-202ENST00000375692 CCNB3Q8WWL7 1395 aa20.38■□□□□ 0.85
CLCNKA-202ENST00000375692 MAGI1Q96QZ7 1491 aaPredicted RBP20.38■□□□□ 0.85
CLCNKA-202ENST00000375692 KCNH8Q96L42 1107 aa20.38■□□□□ 0.85
CLCNKA-202ENST00000375692 GRIN2AQ12879 1464 aa20.36■□□□□ 0.85
CLCNKA-202ENST00000375692 CTTNBP2Q8WZ74 1663 aa20.36■□□□□ 0.85
CLCNKA-202ENST00000375692 FHOD3Q2V2M9 1422 aa20.36■□□□□ 0.85
CLCNKA-202ENST00000375692 SYNJ2O15056 1496 aa20.35■□□□□ 0.85
CLCNKA-202ENST00000375692 ATP1B4Q9UN42 357 aaPredicted RBP20.31■□□□□ 0.84
CLCNKA-202ENST00000375692 RAB3GAP2Q9H2M9 1393 aa20.28■□□□□ 0.84
CLCNKA-202ENST00000375692 TSHZ2Q9NRE2 1034 aa20.26■□□□□ 0.83
CLCNKA-202ENST00000375692 IQGAP2Q13576 1575 aa20.26■□□□□ 0.83
CLCNKA-202ENST00000375692 CEP170Q5SW79 1584 aa20.25■□□□□ 0.83
CLCNKA-202ENST00000375692 KIAA0586Q9BVV6 1533 aa20.25■□□□□ 0.83
CLCNKA-202ENST00000375692 MAPKBP1O60336 1514 aa20.22■□□□□ 0.83
CLCNKA-202ENST00000375692 EFCAB5A4FU69 1503 aa20.21■□□□□ 0.83
CLCNKA-202ENST00000375692 SIN3AQ96ST3 1273 aa20.21■□□□□ 0.83
CLCNKA-202ENST00000375692 NUP160Q12769 1436 aa20.2■□□□□ 0.82
CLCNKA-202ENST00000375692 DDX10Q13206 875 aaKnown RBP20.2■□□□□ 0.82
CLCNKA-202ENST00000375692 SAMD9Q5K651 1589 aa20.19■□□□□ 0.82
CLCNKA-202ENST00000375692 JPH4Q96JJ6 628 aa20.19■□□□□ 0.82
CLCNKA-202ENST00000375692 BCANQ96GW7 911 aa20.18■□□□□ 0.82
CLCNKA-202ENST00000375692 FAM50AQ14320 339 aaKnown RBP20.15■□□□□ 0.82
CLCNKA-202ENST00000375692 SETD5Q9C0A6 1442 aa20.15■□□□□ 0.82
CLCNKA-202ENST00000375692 PCF11O94913 1555 aaKnown RBP20.14■□□□□ 0.81
CLCNKA-202ENST00000375692 DISP1Q96F81 1524 aa20.14■□□□□ 0.81
CLCNKA-202ENST00000375692 UGGT2Q9NYU1 1516 aa20.14■□□□□ 0.81
CLCNKA-202ENST00000375692 ARID3CA6NKF2 412 aa20.14■□□□□ 0.81
CLCNKA-202ENST00000375692 CHD1O14646 1710 aa20.13■□□□□ 0.81
CLCNKA-202ENST00000375692 PHLDB1Q86UU1 1377 aa20.12■□□□□ 0.81
CLCNKA-202ENST00000375692 HIRIP3Q9BW71 556 aaPredicted RBP20.12■□□□□ 0.81
CLCNKA-202ENST00000375692 FMN1Q68DA7 1419 aa20.12■□□□□ 0.81
CLCNKA-202ENST00000375692 TIAM1Q13009 1591 aa20.12■□□□□ 0.81
CLCNKA-202ENST00000375692 CASKIN1Q8WXD9 1431 aa20.1■□□□□ 0.81
CLCNKA-202ENST00000375692 FKBP8Q14318 412 aa20.09■□□□□ 0.81
CLCNKA-202ENST00000375692 LRRC9Q6ZRR7 1453 aa20.08■□□□□ 0.81
CLCNKA-202ENST00000375692 PPP1R15AO75807 674 aaPredicted RBP20.05■□□□□ 0.8
CLCNKA-202ENST00000375692 KIAA0556O60303 1618 aa20.05■□□□□ 0.8
CLCNKA-202ENST00000375692 FYCO1Q9BQS8 1478 aa20.04■□□□□ 0.8
CLCNKA-202ENST00000375692 MAP3K1Q13233 1512 aa20.03■□□□□ 0.8
CLCNKA-202ENST00000375692 PRG4Q92954 1404 aaPredicted RBP20.02■□□□□ 0.79
CLCNKA-202ENST00000375692 ANP32EQ9BTT0 268 aa20■□□□□ 0.79
CLCNKA-202ENST00000375692 TRIM52Q96A61 297 aa19.99■□□□□ 0.79
CLCNKA-202ENST00000375692 CARMIL2Q6F5E8 1435 aa19.98■□□□□ 0.79
CLCNKA-202ENST00000375692 LRRIQ1Q96JM4 1722 aa19.96■□□□□ 0.79
CLCNKA-202ENST00000375692 PLB1Q6P1J6 1458 aa19.96■□□□□ 0.79
CLCNKA-202ENST00000375692 ERCC6L2Q5T890 1561 aa19.93■□□□□ 0.78
CLCNKA-202ENST00000375692 TIMELESSQ9UNS1 1208 aa19.92■□□□□ 0.78
CLCNKA-202ENST00000375692 CDK13Q14004 1512 aaKnown RBP19.92■□□□□ 0.78
CLCNKA-202ENST00000375692 ANP32CO43423 234 aa19.92■□□□□ 0.78
CLCNKA-202ENST00000375692 MTUS2Q5JR59 1369 aa19.91■□□□□ 0.78
CLCNKA-202ENST00000375692 CFAP43Q8NDM7 1665 aa19.9■□□□□ 0.78
CLCNKA-202ENST00000375692 EPRSP07814 1512 aaKnown RBP19.9■□□□□ 0.78
CLCNKA-202ENST00000375692 NEFLP07196 543 aa19.9■□□□□ 0.78
CLCNKA-202ENST00000375692 NUP153P49790 1475 aaKnown RBP19.89■□□□□ 0.77
CLCNKA-202ENST00000375692 CCER2I3L3R5 266 aa19.89■□□□□ 0.77
CLCNKA-202ENST00000375692 PTPRGP23470 1445 aa19.88■□□□□ 0.77
CLCNKA-202ENST00000375692 MAGI3Q5TCQ9 1506 aa19.87■□□□□ 0.77
CLCNKA-202ENST00000375692 CLASP1Q7Z460 1538 aa19.87■□□□□ 0.77
CLCNKA-202ENST00000375692 OSCARQ8IYS5 282 aa19.87■□□□□ 0.77
CLCNKA-202ENST00000375692 HECW1Q76N89 1606 aa19.86■□□□□ 0.77
CLCNKA-202ENST00000375692 SHROOM2Q13796 1616 aa19.85■□□□□ 0.77
CLCNKA-202ENST00000375692 RAPGEF6Q8TEU7 1601 aa19.84■□□□□ 0.77
CLCNKA-202ENST00000375692 RBM19Q9Y4C8 960 aaKnown RBP19.84■□□□□ 0.77
CLCNKA-202ENST00000375692 TONSLQ96HA7 1378 aa19.82■□□□□ 0.76
CLCNKA-202ENST00000375692 CCDC18Q5T9S5 1454 aa19.81■□□□□ 0.76
CLCNKA-202ENST00000375692 NCOA2Q15596 1464 aa19.77■□□□□ 0.76
CLCNKA-202ENST00000375692 ABCA8O94911 1581 aa19.77■□□□□ 0.75
CLCNKA-202ENST00000375692 PTPRKQ15262 1439 aa19.76■□□□□ 0.75
CLCNKA-202ENST00000375692 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.76■□□□□ 0.75
CLCNKA-202ENST00000375692 FGD6Q6ZV73 1430 aa19.76■□□□□ 0.75
CLCNKA-202ENST00000375692 ATP10BO94823 1461 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms