RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PHLDB1Q86UU1 1377 aa17.34■□□□□ 0.37
CLIP3-201ENST00000360535 HMGXB3Q12766 1538 aa17.33■□□□□ 0.36
CLIP3-201ENST00000360535 SETD5Q9C0A6 1442 aa17.32■□□□□ 0.36
CLIP3-201ENST00000360535 TRIM52Q96A61 297 aa17.29■□□□□ 0.36
CLIP3-201ENST00000360535 FGD5Q6ZNL6 1462 aa17.29■□□□□ 0.36
CLIP3-201ENST00000360535 FHOD3Q2V2M9 1422 aa17.28■□□□□ 0.36
CLIP3-201ENST00000360535 FKBP8Q14318 412 aa17.27■□□□□ 0.36
CLIP3-201ENST00000360535 CADPSQ9ULU8 1353 aa17.27■□□□□ 0.36
CLIP3-201ENST00000360535 LRRC9Q6ZRR7 1453 aa17.26■□□□□ 0.35
CLIP3-201ENST00000360535 TIAM1Q13009 1591 aa17.25■□□□□ 0.35
CLIP3-201ENST00000360535 MAPKBP1O60336 1514 aa17.25■□□□□ 0.35
CLIP3-201ENST00000360535 WDR97A6NE52 1622 aa17.24■□□□□ 0.35
CLIP3-201ENST00000360535 RAD54L2Q9Y4B4 1467 aa17.22■□□□□ 0.35
CLIP3-201ENST00000360535 TSHZ2Q9NRE2 1034 aa17.21■□□□□ 0.35
CLIP3-201ENST00000360535 ARID3CA6NKF2 412 aa17.2■□□□□ 0.34
CLIP3-201ENST00000360535 ANP32CO43423 234 aa17.19■□□□□ 0.34
CLIP3-201ENST00000360535 FHAD1B1AJZ9 1412 aa17.18■□□□□ 0.34
CLIP3-201ENST00000360535 PPP1R15AO75807 674 aaPredicted RBP17.16■□□□□ 0.34
CLIP3-201ENST00000360535 CHIC2Q9UKJ5 165 aa17.16■□□□□ 0.34
CLIP3-201ENST00000360535 NEFLP07196 543 aa17.15■□□□□ 0.34
CLIP3-201ENST00000360535 PCF11O94913 1555 aaKnown RBP17.15■□□□□ 0.34
CLIP3-201ENST00000360535 TONSLQ96HA7 1378 aa17.15■□□□□ 0.34
CLIP3-201ENST00000360535 MTUS2Q5JR59 1369 aa17.13■□□□□ 0.33
CLIP3-201ENST00000360535 FANCD2Q9BXW9 1451 aa17.13■□□□□ 0.33
CLIP3-201ENST00000360535 RRP7BPQ9NSQ0 103 aa17.11■□□□□ 0.33
CLIP3-201ENST00000360535 NESP48681 1621 aa17.1■□□□□ 0.33
CLIP3-201ENST00000360535 TDRD9Q8NDG6 1382 aaKnown RBP17.09■□□□□ 0.33
CLIP3-201ENST00000360535 IRX6P78412 446 aaPredicted RBP17.07■□□□□ 0.32
CLIP3-201ENST00000360535 CNGB1Q14028 1251 aaPredicted RBP17.06■□□□□ 0.32
CLIP3-201ENST00000360535 MAP3K1Q13233 1512 aa17.04■□□□□ 0.32
CLIP3-201ENST00000360535 POLA1P09884 1462 aaPredicted RBP17.02■□□□□ 0.32
CLIP3-201ENST00000360535 DNAJC5BQ9UF47 199 aa17.02■□□□□ 0.32
CLIP3-201ENST00000360535 CC2D2AQ9P2K1 1620 aa17.02■□□□□ 0.32
CLIP3-201ENST00000360535 HNRNPUQ00839 825 aaKnown RBP eCLIP17.02■□□□□ 0.32
CLIP3-201ENST00000360535 PRDM2Q13029 1718 aa17.01■□□□□ 0.31
CLIP3-201ENST00000360535 FGD6Q6ZV73 1430 aa17.01■□□□□ 0.31
CLIP3-201ENST00000360535 CCDC18Q5T9S5 1454 aa17■□□□□ 0.31
CLIP3-201ENST00000360535 FOXD1Q16676 465 aa17■□□□□ 0.31
CLIP3-201ENST00000360535 CASKIN1Q8WXD9 1431 aa17■□□□□ 0.31
CLIP3-201ENST00000360535 TIMELESSQ9UNS1 1208 aa17■□□□□ 0.31
CLIP3-201ENST00000360535 PTPRKQ15262 1439 aa16.99■□□□□ 0.31
CLIP3-201ENST00000360535 TOPBP1Q92547 1522 aa16.98■□□□□ 0.31
CLIP3-201ENST00000360535 FYCO1Q9BQS8 1478 aa16.98■□□□□ 0.31
CLIP3-201ENST00000360535 CFAP43Q8NDM7 1665 aa16.97■□□□□ 0.31
CLIP3-201ENST00000360535 FMN1Q68DA7 1419 aa16.96■□□□□ 0.31
CLIP3-201ENST00000360535 CCER2I3L3R5 266 aa16.95■□□□□ 0.3
CLIP3-201ENST00000360535 ABCA10Q8WWZ4 1543 aa16.93■□□□□ 0.3
CLIP3-201ENST00000360535 HSPA5P11021 654 aaKnown RBP16.92■□□□□ 0.3
CLIP3-201ENST00000360535 DNMBPQ6XZF7 1577 aa16.92■□□□□ 0.3
CLIP3-201ENST00000360535 POLR3GLQ9BT43 218 aa16.91■□□□□ 0.3
CLIP3-201ENST00000360535 ANP32EQ9BTT0 268 aa16.91■□□□□ 0.3
CLIP3-201ENST00000360535 AQRO60306 1485 aaKnown RBP eCLIP16.91■□□□□ 0.3
CLIP3-201ENST00000360535 NCOA2Q15596 1464 aa16.9■□□□□ 0.3
CLIP3-201ENST00000360535 RBM19Q9Y4C8 960 aaKnown RBP16.9■□□□□ 0.3
CLIP3-201ENST00000360535 FAM9BQ8IZU0 186 aa16.89■□□□□ 0.3
CLIP3-201ENST00000360535 UACAQ9BZF9 1416 aa16.89■□□□□ 0.29
CLIP3-201ENST00000360535 SENP3-EIF4A1A0A087X0R7 540 aa16.88■□□□□ 0.29
CLIP3-201ENST00000360535 EFCAB5A4FU69 1503 aa16.88■□□□□ 0.29
CLIP3-201ENST00000360535 NAIPQ13075 1403 aa16.88■□□□□ 0.29
CLIP3-201ENST00000360535 HFM1A2PYH4 1435 aa16.87■□□□□ 0.29
CLIP3-201ENST00000360535 MYOM3Q5VTT5 1437 aa16.86■□□□□ 0.29
CLIP3-201ENST00000360535 CCDC184Q52MB2 194 aa16.86■□□□□ 0.29
CLIP3-201ENST00000360535 WASHC2AQ641Q2 1341 aa16.85■□□□□ 0.29
CLIP3-201ENST00000360535 SNAPC4Q5SXM2 1469 aa16.85■□□□□ 0.29
CLIP3-201ENST00000360535 CTTNBP2Q8WZ74 1663 aa16.84■□□□□ 0.29
CLIP3-201ENST00000360535 EIF4G2P78344 907 aaKnown RBP eCLIP16.84■□□□□ 0.29
CLIP3-201ENST00000360535 GAPVD1Q14C86 1478 aa16.84■□□□□ 0.29
CLIP3-201ENST00000360535 PTPN23Q9H3S7 1636 aa16.84■□□□□ 0.29
CLIP3-201ENST00000360535 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.84■□□□□ 0.29
CLIP3-201ENST00000360535 ZNF326Q5BKZ1 582 aaKnown RBP16.83■□□□□ 0.29
CLIP3-201ENST00000360535 L3MBTL2Q969R5 705 aa16.83■□□□□ 0.29
CLIP3-201ENST00000360535 URB2Q14146 1524 aaKnown RBP16.83■□□□□ 0.29
CLIP3-201ENST00000360535 MPHOSPH9Q99550 1183 aa16.82■□□□□ 0.28
CLIP3-201ENST00000360535 CUL7Q14999 1698 aa16.81■□□□□ 0.28
CLIP3-201ENST00000360535 C11orf95C9JLR9 678 aaPredicted RBP16.79■□□□□ 0.28
CLIP3-201ENST00000360535 MRS2Q9HD23 443 aa16.78■□□□□ 0.28
CLIP3-201ENST00000360535 ZNF644Q9H582 1327 aaPredicted RBP16.77■□□□□ 0.28
CLIP3-201ENST00000360535 ZNF777Q9ULD5 760 aaPredicted RBP16.77■□□□□ 0.27
CLIP3-201ENST00000360535 LRRIQ1Q96JM4 1722 aa16.76■□□□□ 0.27
CLIP3-201ENST00000360535 SLC4A1APQ9BWU0 796 aaKnown RBP16.75■□□□□ 0.27
CLIP3-201ENST00000360535 GRIN2BQ13224 1484 aa16.75■□□□□ 0.27
CLIP3-201ENST00000360535 SUPT6HQ7KZ85 1726 aaKnown RBP16.75■□□□□ 0.27
CLIP3-201ENST00000360535 CDK11AQ9UQ88 783 aaPredicted RBP16.75■□□□□ 0.27
CLIP3-201ENST00000360535 MAGI3Q5TCQ9 1506 aa16.74■□□□□ 0.27
CLIP3-201ENST00000360535 CDK13Q14004 1512 aaKnown RBP16.73■□□□□ 0.27
CLIP3-201ENST00000360535 NBPF8Q3BBV2 869 aa16.72■□□□□ 0.27
CLIP3-201ENST00000360535 BCL11AQ9H165 835 aa16.71■□□□□ 0.27
CLIP3-201ENST00000360535 B4GALNT3Q6L9W6 998 aa16.71■□□□□ 0.26
CLIP3-201ENST00000360535 KDM6BO15054 1643 aa16.7■□□□□ 0.26
CLIP3-201ENST00000360535 EHBP1L1Q8N3D4 1523 aa16.7■□□□□ 0.26
CLIP3-201ENST00000360535 ERICH6Q7L0X2 663 aa16.69■□□□□ 0.26
CLIP3-201ENST00000360535 PDS5BQ9NTI5 1447 aa16.69■□□□□ 0.26
CLIP3-201ENST00000360535 FBLN2P98095 1184 aa16.68■□□□□ 0.26
CLIP3-201ENST00000360535 PRKRIP1Q9H875 184 aaPredicted RBP16.68■□□□□ 0.26
CLIP3-201ENST00000360535 SAMD9Q5K651 1589 aa16.67■□□□□ 0.26
CLIP3-201ENST00000360535 UGGT2Q9NYU1 1516 aa16.67■□□□□ 0.26
CLIP3-201ENST00000360535 MSH5O43196 834 aa16.65■□□□□ 0.26
CLIP3-201ENST00000360535 KDM5BQ9UGL1 1544 aa16.65■□□□□ 0.26
CLIP3-201ENST00000360535 EPRSP07814 1512 aaKnown RBP16.64■□□□□ 0.25
CLIP3-201ENST00000360535 DENND4BO75064 1496 aaPredicted RBP16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms