RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 NISCHQ9Y2I1 1504 aa24.17■■□□□ 1.46
CLIP3-201ENST00000360535 SHROOM4Q9ULL8 1493 aa21.42■■□□□ 1.02
CLIP3-201ENST00000360535 SUPT5HO00267 1087 aaKnown RBP21.12■□□□□ 0.97
CLIP3-201ENST00000360535 DCAF8L2P0C7V8 631 aa20.85■□□□□ 0.93
CLIP3-201ENST00000360535 ZCCHC6Q5VYS8 1495 aaKnown RBP20.4■□□□□ 0.86
CLIP3-201ENST00000360535 CHIC1Q5VXU3 224 aa20.31■□□□□ 0.84
CLIP3-201ENST00000360535 MYO15BQ96JP2 1530 aa20.22■□□□□ 0.83
CLIP3-201ENST00000360535 CCDC180Q9P1Z9 1646 aa20.18■□□□□ 0.82
CLIP3-201ENST00000360535 PCGF6Q9BYE7 350 aa20.14■□□□□ 0.81
CLIP3-201ENST00000360535 HRCP23327 699 aa19.99■□□□□ 0.79
CLIP3-201ENST00000360535 LOC105371045A0A1W2PR82 267 aa19.97■□□□□ 0.79
CLIP3-201ENST00000360535 PPARGC1BQ86YN6 1023 aaKnown RBP19.87■□□□□ 0.77
CLIP3-201ENST00000360535 EHMT2Q96KQ7 1210 aa19.7■□□□□ 0.74
CLIP3-201ENST00000360535 FAM9AQ8IZU1 332 aaPredicted RBP19.63■□□□□ 0.73
CLIP3-201ENST00000360535 DCAF1Q9Y4B6 1507 aa19.52■□□□□ 0.72
CLIP3-201ENST00000360535 TRIM41Q8WV44 630 aa19.47■□□□□ 0.71
CLIP3-201ENST00000360535 TRIM26Q12899 539 aaPredicted RBP19.44■□□□□ 0.7
CLIP3-201ENST00000360535 SCRIBQ14160 1630 aa19.43■□□□□ 0.7
CLIP3-201ENST00000360535 RSF1Q96T23 1441 aaPredicted RBP19.31■□□□□ 0.68
CLIP3-201ENST00000360535 ABCC9O60706 1549 aa19.27■□□□□ 0.67
CLIP3-201ENST00000360535 RB1CC1Q8TDY2 1594 aa19.17■□□□□ 0.66
CLIP3-201ENST00000360535 CECR2Q9BXF3 1484 aa19.06■□□□□ 0.64
CLIP3-201ENST00000360535 TTBK1Q5TCY1 1321 aaPredicted RBP19.06■□□□□ 0.64
CLIP3-201ENST00000360535 ZEB1P37275 1124 aaPredicted RBP18.99■□□□□ 0.63
CLIP3-201ENST00000360535 MROH2BQ7Z745 1585 aa18.93■□□□□ 0.62
CLIP3-201ENST00000360535 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.89■□□□□ 0.61
CLIP3-201ENST00000360535 WIZO95785 1651 aa18.85■□□□□ 0.61
CLIP3-201ENST00000360535 CCER1Q8TC90 406 aaPredicted RBP18.82■□□□□ 0.6
CLIP3-201ENST00000360535 NACADO15069 1562 aa18.75■□□□□ 0.59
CLIP3-201ENST00000360535 SCAF1Q9H7N4 1312 aaKnown RBP18.65■□□□□ 0.58
CLIP3-201ENST00000360535 UBTFP17480 764 aaKnown RBP18.64■□□□□ 0.57
CLIP3-201ENST00000360535 ABCC8Q09428 1581 aa18.62■□□□□ 0.57
CLIP3-201ENST00000360535 PABPN1Q86U42 306 aaKnown RBP eCLIP18.59■□□□□ 0.57
CLIP3-201ENST00000360535 CCDC88BA6NC98 1476 aa18.55■□□□□ 0.56
CLIP3-201ENST00000360535 RANGAP1P46060 587 aaPredicted RBP18.54■□□□□ 0.56
CLIP3-201ENST00000360535 BAZ1AQ9NRL2 1556 aaPredicted RBP18.53■□□□□ 0.56
CLIP3-201ENST00000360535 SOGA1O94964 1423 aa18.5■□□□□ 0.55
CLIP3-201ENST00000360535 DIEXFQ68CQ4 756 aaKnown RBP18.46■□□□□ 0.55
CLIP3-201ENST00000360535 CSRNP3Q8WYN3 585 aa18.44■□□□□ 0.54
CLIP3-201ENST00000360535 CEP162Q5TB80 1403 aa18.44■□□□□ 0.54
CLIP3-201ENST00000360535 RUSC2Q8N2Y8 1516 aa18.42■□□□□ 0.54
CLIP3-201ENST00000360535 NEUROD1Q13562 356 aa18.41■□□□□ 0.54
CLIP3-201ENST00000360535 HNRNPUL2Q1KMD3 747 aaKnown RBP18.4■□□□□ 0.54
CLIP3-201ENST00000360535 TOP2AP11388 1531 aaKnown RBP18.37■□□□□ 0.53
CLIP3-201ENST00000360535 PELP1Q8IZL8 1130 aaKnown RBP18.37■□□□□ 0.53
CLIP3-201ENST00000360535 EIF4G1Q04637 1599 aaKnown RBP18.35■□□□□ 0.53
CLIP3-201ENST00000360535 SMARCA4P51532 1647 aa18.35■□□□□ 0.53
CLIP3-201ENST00000360535 ACIN1Q9UKV3 1341 aaKnown RBP18.35■□□□□ 0.53
CLIP3-201ENST00000360535 YTHDC1Q96MU7 727 aaKnown RBP18.34■□□□□ 0.53
CLIP3-201ENST00000360535 SMARCA2P51531 1590 aa18.33■□□□□ 0.53
CLIP3-201ENST00000360535 GTF3C3Q9Y5Q9 886 aa18.29■□□□□ 0.52
CLIP3-201ENST00000360535 TNIKQ9UKE5 1360 aa18.29■□□□□ 0.52
CLIP3-201ENST00000360535 CENPBP07199 599 aaPredicted RBP18.25■□□□□ 0.51
CLIP3-201ENST00000360535 APLP2Q06481 763 aa18.23■□□□□ 0.51
CLIP3-201ENST00000360535 WRNQ14191 1432 aaPredicted RBP eCLIP18.22■□□□□ 0.51
CLIP3-201ENST00000360535 UNC13AQ9UPW8 1703 aa18.21■□□□□ 0.5
CLIP3-201ENST00000360535 ZNF316A6NFI3 1004 aaPredicted RBP18.19■□□□□ 0.5
CLIP3-201ENST00000360535 GOLGA3Q08378 1498 aa18.16■□□□□ 0.5
CLIP3-201ENST00000360535 EEA1Q15075 1411 aa18.12■□□□□ 0.49
CLIP3-201ENST00000360535 CLIP1P30622 1438 aa18.08■□□□□ 0.49
CLIP3-201ENST00000360535 MIER1Q8N108 512 aa18.07■□□□□ 0.48
CLIP3-201ENST00000360535 SYNJ1O43426 1573 aa18.02■□□□□ 0.48
CLIP3-201ENST00000360535 CEP164Q9UPV0 1460 aa18.01■□□□□ 0.47
CLIP3-201ENST00000360535 RAPGEF2Q9Y4G8 1499 aa17.98■□□□□ 0.47
CLIP3-201ENST00000360535 BICRAQ9NZM4 1560 aa17.98■□□□□ 0.47
CLIP3-201ENST00000360535 ITGAEP38570 1179 aa17.96■□□□□ 0.47
CLIP3-201ENST00000360535 BAZ1BQ9UIG0 1483 aaKnown RBP17.95■□□□□ 0.46
CLIP3-201ENST00000360535 VPS8Q8N3P4 1428 aa17.91■□□□□ 0.46
CLIP3-201ENST00000360535 ATAD2BQ9ULI0 1458 aa17.91■□□□□ 0.46
CLIP3-201ENST00000360535 KANK4Q5T7N3 995 aaPredicted RBP17.86■□□□□ 0.45
CLIP3-201ENST00000360535 KIF21BO75037 1637 aa17.83■□□□□ 0.44
CLIP3-201ENST00000360535 PEG3Q9GZU2 1588 aa17.76■□□□□ 0.43
CLIP3-201ENST00000360535 ATP1B4Q9UN42 357 aaPredicted RBP17.75■□□□□ 0.43
CLIP3-201ENST00000360535 DHX57Q6P158 1386 aaKnown RBP17.68■□□□□ 0.42
CLIP3-201ENST00000360535 P3H3Q8IVL6 736 aa17.66■□□□□ 0.42
CLIP3-201ENST00000360535 TOP2BQ02880 1626 aa17.66■□□□□ 0.42
CLIP3-201ENST00000360535 ARAP1Q96P48 1450 aa17.64■□□□□ 0.41
CLIP3-201ENST00000360535 FAM50AQ14320 339 aaKnown RBP17.6■□□□□ 0.41
CLIP3-201ENST00000360535 KIF27Q86VH2 1401 aa17.6■□□□□ 0.41
CLIP3-201ENST00000360535 MYT1Q01538 1121 aa17.59■□□□□ 0.41
CLIP3-201ENST00000360535 PRXQ9BXM0 1461 aa17.59■□□□□ 0.41
CLIP3-201ENST00000360535 CUX1P39880 1505 aa17.56■□□□□ 0.4
CLIP3-201ENST00000360535 KCNH8Q96L42 1107 aa17.54■□□□□ 0.4
CLIP3-201ENST00000360535 CCNB3Q8WWL7 1395 aa17.54■□□□□ 0.4
CLIP3-201ENST00000360535 HIRIP3Q9BW71 556 aaPredicted RBP17.53■□□□□ 0.4
CLIP3-201ENST00000360535 CLSPNQ9HAW4 1339 aa17.51■□□□□ 0.39
CLIP3-201ENST00000360535 SIN3AQ96ST3 1273 aa17.51■□□□□ 0.39
CLIP3-201ENST00000360535 BIVM-ERCC5R4GMW8 1640 aa17.5■□□□□ 0.39
CLIP3-201ENST00000360535 ERICH3Q5RHP9 1530 aa17.5■□□□□ 0.39
CLIP3-201ENST00000360535 ARHGAP35Q9NRY4 1499 aa17.49■□□□□ 0.39
CLIP3-201ENST00000360535 CUX2O14529 1486 aa17.48■□□□□ 0.39
CLIP3-201ENST00000360535 DDX10Q13206 875 aaKnown RBP17.47■□□□□ 0.39
CLIP3-201ENST00000360535 BCANQ96GW7 911 aa17.47■□□□□ 0.39
CLIP3-201ENST00000360535 RAB3GAP2Q9H2M9 1393 aa17.47■□□□□ 0.39
CLIP3-201ENST00000360535 SUPT16HQ9Y5B9 1047 aaKnown RBP17.46■□□□□ 0.39
CLIP3-201ENST00000360535 RRBP1Q9P2E9 1410 aaKnown RBP17.44■□□□□ 0.38
CLIP3-201ENST00000360535 NCAPD3P42695 1498 aa17.42■□□□□ 0.38
CLIP3-201ENST00000360535 IGF1RP08069 1367 aa17.41■□□□□ 0.38
CLIP3-201ENST00000360535 CARMIL1Q5VZK9 1371 aa17.4■□□□□ 0.38
CLIP3-201ENST00000360535 CFTRP13569 1480 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms