RNA–Protein interactions for RNA: ENST00000359366.9

ATXN3-202, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 2,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-202ENST00000359366 URB2Q14146 1524 aaKnown RBP8□□□□□ -1.13
ATXN3-202ENST00000359366 TOPBP1Q92547 1522 aa8□□□□□ -1.13
ATXN3-202ENST00000359366 KIF27Q86VH2 1401 aa8□□□□□ -1.13
ATXN3-202ENST00000359366 KIF21BO75037 1637 aa8□□□□□ -1.13
ATXN3-202ENST00000359366 POLA1P09884 1462 aaPredicted RBP7.98□□□□□ -1.13
ATXN3-202ENST00000359366 KCNA4P22459 653 aa7.98□□□□□ -1.13
ATXN3-202ENST00000359366 DNMBPQ6XZF7 1577 aa7.98□□□□□ -1.13
ATXN3-202ENST00000359366 PDS5BQ9NTI5 1447 aa7.98□□□□□ -1.13
ATXN3-202ENST00000359366 TRIM26Q12899 539 aaPredicted RBP7.98□□□□□ -1.13
ATXN3-202ENST00000359366 ABCB7O75027 752 aa7.96□□□□□ -1.13
ATXN3-202ENST00000359366 IGF1RP08069 1367 aa7.96□□□□□ -1.13
ATXN3-202ENST00000359366 PRXQ9BXM0 1461 aa7.96□□□□□ -1.14
ATXN3-202ENST00000359366 TDRD9Q8NDG6 1382 aaKnown RBP7.96□□□□□ -1.14
ATXN3-202ENST00000359366 CLIP1P30622 1438 aa7.95□□□□□ -1.14
ATXN3-202ENST00000359366 HAX1O00165 279 aa7.95□□□□□ -1.14
ATXN3-202ENST00000359366 CARMIL1Q5VZK9 1371 aa7.92□□□□□ -1.14
ATXN3-202ENST00000359366 ZNF219Q9P2Y4 722 aaPredicted RBP7.92□□□□□ -1.14
ATXN3-202ENST00000359366 TRHP20396 242 aaPredicted RBP7.92□□□□□ -1.14
ATXN3-202ENST00000359366 ABCA10Q8WWZ4 1543 aa7.91□□□□□ -1.14
ATXN3-202ENST00000359366 ERICH3Q5RHP9 1530 aa7.9□□□□□ -1.14
ATXN3-202ENST00000359366 APLP2Q06481 763 aa7.9□□□□□ -1.14
ATXN3-202ENST00000359366 P3H3Q8IVL6 736 aa7.9□□□□□ -1.14
ATXN3-202ENST00000359366 ERCC6Q03468 1493 aa7.9□□□□□ -1.14
ATXN3-202ENST00000359366 AQRO60306 1485 aaKnown RBP eCLIP7.88□□□□□ -1.15
ATXN3-202ENST00000359366 MRC2Q9UBG0 1479 aa7.88□□□□□ -1.15
ATXN3-202ENST00000359366 ARAP1Q96P48 1450 aa7.87□□□□□ -1.15
ATXN3-202ENST00000359366 WDR97A6NE52 1622 aa7.87□□□□□ -1.15
ATXN3-202ENST00000359366 LHX8Q68G74 356 aa7.87□□□□□ -1.15
ATXN3-202ENST00000359366 GAPVD1Q14C86 1478 aa7.87□□□□□ -1.15
ATXN3-202ENST00000359366 HRCP23327 699 aa7.86□□□□□ -1.15
ATXN3-202ENST00000359366 ZNF608Q9ULD9 1512 aaPredicted RBP7.86□□□□□ -1.15
ATXN3-202ENST00000359366 TARBP1Q13395 1621 aaKnown RBP7.86□□□□□ -1.15
ATXN3-202ENST00000359366 VPS8Q8N3P4 1428 aa7.86□□□□□ -1.15
ATXN3-202ENST00000359366 ARHGAP35Q9NRY4 1499 aa7.85□□□□□ -1.15
ATXN3-202ENST00000359366 ABCA5Q8WWZ7 1642 aa7.84□□□□□ -1.15
ATXN3-202ENST00000359366 ATP1B4Q9UN42 357 aaPredicted RBP7.83□□□□□ -1.16
ATXN3-202ENST00000359366 KANK4Q5T7N3 995 aaPredicted RBP7.82□□□□□ -1.16
ATXN3-202ENST00000359366 WDR62O43379 1518 aa7.82□□□□□ -1.16
ATXN3-202ENST00000359366 PIP4P2Q8N4L2 257 aa7.81□□□□□ -1.16
ATXN3-202ENST00000359366 CUL7Q14999 1698 aa7.81□□□□□ -1.16
ATXN3-202ENST00000359366 THOC2Q8NI27 1593 aaKnown RBP7.8□□□□□ -1.16
ATXN3-202ENST00000359366 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.8□□□□□ -1.16
ATXN3-202ENST00000359366 PBRM1Q86U86 1689 aa7.8□□□□□ -1.16
ATXN3-202ENST00000359366 FHOD3Q2V2M9 1422 aa7.8□□□□□ -1.16
ATXN3-202ENST00000359366 FBLN2P98095 1184 aa7.79□□□□□ -1.16
ATXN3-202ENST00000359366 HNRNPUL2Q1KMD3 747 aaKnown RBP7.79□□□□□ -1.16
ATXN3-202ENST00000359366 IFT140Q96RY7 1462 aa7.78□□□□□ -1.16
ATXN3-202ENST00000359366 NCBP3Q53F19 620 aaKnown RBP7.77□□□□□ -1.16
ATXN3-202ENST00000359366 CTTNBP2Q8WZ74 1663 aa7.77□□□□□ -1.17
ATXN3-202ENST00000359366 EIF4G3O43432 1585 aaKnown RBP7.76□□□□□ -1.17
ATXN3-202ENST00000359366 GRIN2BQ13224 1484 aa7.76□□□□□ -1.17
ATXN3-202ENST00000359366 SNAPC4Q5SXM2 1469 aa7.76□□□□□ -1.17
ATXN3-202ENST00000359366 ARID3CA6NKF2 412 aa7.75□□□□□ -1.17
ATXN3-202ENST00000359366 ADAMTS12P58397 1594 aa7.75□□□□□ -1.17
ATXN3-202ENST00000359366 FHAD1B1AJZ9 1412 aa7.74□□□□□ -1.17
ATXN3-202ENST00000359366 PCF11O94913 1555 aaKnown RBP7.74□□□□□ -1.17
ATXN3-202ENST00000359366 ITGAEP38570 1179 aa7.73□□□□□ -1.17
ATXN3-202ENST00000359366 CCER1Q8TC90 406 aaPredicted RBP7.72□□□□□ -1.17
ATXN3-202ENST00000359366 CHMP7Q8WUX9 453 aaPredicted RBP7.72□□□□□ -1.17
ATXN3-202ENST00000359366 AKT1S1Q96B36 256 aa7.72□□□□□ -1.17
ATXN3-202ENST00000359366 ERICH6Q7L0X2 663 aa7.71□□□□□ -1.17
ATXN3-202ENST00000359366 TIAM1Q13009 1591 aa7.69□□□□□ -1.18
ATXN3-202ENST00000359366 IQGAP2Q13576 1575 aa7.69□□□□□ -1.18
ATXN3-202ENST00000359366 GRIN2AQ12879 1464 aa7.69□□□□□ -1.18
ATXN3-202ENST00000359366 EFCAB5A4FU69 1503 aa7.68□□□□□ -1.18
ATXN3-202ENST00000359366 SAMD9Q5K651 1589 aa7.68□□□□□ -1.18
ATXN3-202ENST00000359366 SLC24A1O60721 1099 aa7.68□□□□□ -1.18
ATXN3-202ENST00000359366 DNAJC5Q9H3Z4 198 aa7.67□□□□□ -1.18
ATXN3-202ENST00000359366 LRRIQ1Q96JM4 1722 aa7.67□□□□□ -1.18
ATXN3-202ENST00000359366 LRRC9Q6ZRR7 1453 aa7.67□□□□□ -1.18
ATXN3-202ENST00000359366 EVX2Q03828 476 aa7.66□□□□□ -1.18
ATXN3-202ENST00000359366 CASKIN1Q8WXD9 1431 aa7.66□□□□□ -1.18
ATXN3-202ENST00000359366 CEP170Q5SW79 1584 aa7.66□□□□□ -1.18
ATXN3-202ENST00000359366 PHLDB1Q86UU1 1377 aa7.66□□□□□ -1.18
ATXN3-202ENST00000359366 SYNJ2O15056 1496 aa7.66□□□□□ -1.18
ATXN3-202ENST00000359366 FMN1Q68DA7 1419 aa7.66□□□□□ -1.18
ATXN3-202ENST00000359366 FAM50AQ14320 339 aaKnown RBP7.65□□□□□ -1.18
ATXN3-202ENST00000359366 MAGI1Q96QZ7 1491 aaPredicted RBP7.65□□□□□ -1.18
ATXN3-202ENST00000359366 FYCO1Q9BQS8 1478 aa7.65□□□□□ -1.19
ATXN3-202ENST00000359366 FXR2P51116 673 aaKnown RBP eCLIP7.64□□□□□ -1.19
ATXN3-202ENST00000359366 CFAP43Q8NDM7 1665 aa7.64□□□□□ -1.19
ATXN3-202ENST00000359366 KIAA0586Q9BVV6 1533 aa7.64□□□□□ -1.19
ATXN3-202ENST00000359366 CCNB3Q8WWL7 1395 aa7.63□□□□□ -1.19
ATXN3-202ENST00000359366 DISP1Q96F81 1524 aa7.63□□□□□ -1.19
ATXN3-202ENST00000359366 MTUS2Q5JR59 1369 aa7.63□□□□□ -1.19
ATXN3-202ENST00000359366 CDK13Q14004 1512 aaKnown RBP7.63□□□□□ -1.19
ATXN3-202ENST00000359366 JPH4Q96JJ6 628 aa7.62□□□□□ -1.19
ATXN3-202ENST00000359366 RRBP1Q9P2E9 1410 aaKnown RBP7.62□□□□□ -1.19
ATXN3-202ENST00000359366 UGGT2Q9NYU1 1516 aa7.61□□□□□ -1.19
ATXN3-202ENST00000359366 KIAA0556O60303 1618 aa7.61□□□□□ -1.19
ATXN3-202ENST00000359366 MAGI3Q5TCQ9 1506 aa7.61□□□□□ -1.19
ATXN3-202ENST00000359366 ZEB1P37275 1124 aaPredicted RBP7.61□□□□□ -1.19
ATXN3-202ENST00000359366 CHD1O14646 1710 aa7.61□□□□□ -1.19
ATXN3-202ENST00000359366 MAP3K1Q13233 1512 aa7.6□□□□□ -1.19
ATXN3-202ENST00000359366 REM2Q8IYK8 340 aaPredicted RBP7.6□□□□□ -1.19
ATXN3-202ENST00000359366 NUP160Q12769 1436 aa7.59□□□□□ -1.19
ATXN3-202ENST00000359366 NPM3O75607 178 aaKnown RBP7.59□□□□□ -1.19
ATXN3-202ENST00000359366 PLB1Q6P1J6 1458 aa7.59□□□□□ -1.19
ATXN3-202ENST00000359366 EPRSP07814 1512 aaKnown RBP7.58□□□□□ -1.2
ATXN3-202ENST00000359366 NCOA2Q15596 1464 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 129.4 ms