RNA–Protein interactions for RNA: ENST00000352993.7

BRCA1-201, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 3,668 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-201ENST00000352993 MSH5O43196 834 aa10.79□□□□□ -0.68
BRCA1-201ENST00000352993 CLIP1P30622 1438 aa10.78□□□□□ -0.68
BRCA1-201ENST00000352993 CDK11AQ9UQ88 783 aaPredicted RBP10.78□□□□□ -0.68
BRCA1-201ENST00000352993 FANCD2Q9BXW9 1451 aa10.78□□□□□ -0.68
BRCA1-201ENST00000352993 DHX57Q6P158 1386 aaKnown RBP10.78□□□□□ -0.68
BRCA1-201ENST00000352993 IRX6P78412 446 aaPredicted RBP10.77□□□□□ -0.69
BRCA1-201ENST00000352993 DNMBPQ6XZF7 1577 aa10.75□□□□□ -0.69
BRCA1-201ENST00000352993 HIRIP3Q9BW71 556 aaPredicted RBP10.75□□□□□ -0.69
BRCA1-201ENST00000352993 RIMBP3CA6NJZ7 1639 aa10.74□□□□□ -0.69
BRCA1-201ENST00000352993 RIMBP3BA6NNM3 1639 aa10.74□□□□□ -0.69
BRCA1-201ENST00000352993 RIMBP3Q9UFD9 1639 aa10.74□□□□□ -0.69
BRCA1-201ENST00000352993 EEA1Q15075 1411 aa10.74□□□□□ -0.69
BRCA1-201ENST00000352993 EIF4G3O43432 1585 aaKnown RBP10.73□□□□□ -0.69
BRCA1-201ENST00000352993 CHD1O14646 1710 aa10.73□□□□□ -0.69
BRCA1-201ENST00000352993 DEKP35659 375 aaKnown RBP10.72□□□□□ -0.69
BRCA1-201ENST00000352993 ANP32CO43423 234 aa10.72□□□□□ -0.69
BRCA1-201ENST00000352993 VPS8Q8N3P4 1428 aa10.71□□□□□ -0.7
BRCA1-201ENST00000352993 IFT140Q96RY7 1462 aa10.71□□□□□ -0.7
BRCA1-201ENST00000352993 NBR1Q14596 966 aa10.7□□□□□ -0.7
BRCA1-201ENST00000352993 CLASP1Q7Z460 1538 aa10.68□□□□□ -0.7
BRCA1-201ENST00000352993 TOPBP1Q92547 1522 aa10.66□□□□□ -0.7
BRCA1-201ENST00000352993 FANCIQ9NVI1 1328 aa10.66□□□□□ -0.7
BRCA1-201ENST00000352993 HNRNPUQ00839 825 aaKnown RBP eCLIP10.65□□□□□ -0.7
BRCA1-201ENST00000352993 MYT1LQ9UL68 1186 aa10.65□□□□□ -0.7
BRCA1-201ENST00000352993 KANK4Q5T7N3 995 aaPredicted RBP10.65□□□□□ -0.7
BRCA1-201ENST00000352993 PBRM1Q86U86 1689 aa10.64□□□□□ -0.71
BRCA1-201ENST00000352993 SIN3AQ96ST3 1273 aa10.63□□□□□ -0.71
BRCA1-201ENST00000352993 ANO8Q9HCE9 1232 aaPredicted RBP10.63□□□□□ -0.71
BRCA1-201ENST00000352993 ABCA5Q8WWZ7 1642 aa10.61□□□□□ -0.71
BRCA1-201ENST00000352993 RTL5Q5HYW3 569 aaPredicted RBP10.6□□□□□ -0.71
BRCA1-201ENST00000352993 CCER2I3L3R5 266 aa10.59□□□□□ -0.71
BRCA1-201ENST00000352993 SHROOM2Q13796 1616 aa10.59□□□□□ -0.71
BRCA1-201ENST00000352993 BIVM-ERCC5R4GMW8 1640 aa10.58□□□□□ -0.72
BRCA1-201ENST00000352993 RAPGEF2Q9Y4G8 1499 aa10.57□□□□□ -0.72
BRCA1-201ENST00000352993 RTN4Q9NQC3 1192 aaKnown RBP10.57□□□□□ -0.72
BRCA1-201ENST00000352993 ARHGEF11O15085 1522 aa10.57□□□□□ -0.72
BRCA1-201ENST00000352993 B4GALNT3Q6L9W6 998 aa10.57□□□□□ -0.72
BRCA1-201ENST00000352993 PPP1R15AO75807 674 aaPredicted RBP10.56□□□□□ -0.72
BRCA1-201ENST00000352993 FAM50AQ14320 339 aaKnown RBP10.56□□□□□ -0.72
BRCA1-201ENST00000352993 NOP58Q9Y2X3 529 aaKnown RBP10.56□□□□□ -0.72
BRCA1-201ENST00000352993 RAB3GAP2Q9H2M9 1393 aa10.55□□□□□ -0.72
BRCA1-201ENST00000352993 CCDC136Q96JN2 1154 aa10.54□□□□□ -0.72
BRCA1-201ENST00000352993 CCNB3Q8WWL7 1395 aa10.54□□□□□ -0.72
BRCA1-201ENST00000352993 KIF21BO75037 1637 aa10.54□□□□□ -0.72
BRCA1-201ENST00000352993 PPP4R2Q9NY27 417 aa10.54□□□□□ -0.72
BRCA1-201ENST00000352993 ATP1B4Q9UN42 357 aaPredicted RBP10.53□□□□□ -0.72
BRCA1-201ENST00000352993 ZNF608Q9ULD9 1512 aaPredicted RBP10.53□□□□□ -0.72
BRCA1-201ENST00000352993 SALL2Q9Y467 1007 aaPredicted RBP10.53□□□□□ -0.72
BRCA1-201ENST00000352993 POLA1P09884 1462 aaPredicted RBP10.51□□□□□ -0.73
BRCA1-201ENST00000352993 PAK3O75914 559 aaPredicted RBP10.51□□□□□ -0.73
BRCA1-201ENST00000352993 ANP32AP39687 249 aaKnown RBP10.5□□□□□ -0.73
BRCA1-201ENST00000352993 MAGI1Q96QZ7 1491 aaPredicted RBP10.5□□□□□ -0.73
BRCA1-201ENST00000352993 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.49□□□□□ -0.73
BRCA1-201ENST00000352993 FAM9BQ8IZU0 186 aa10.49□□□□□ -0.73
BRCA1-201ENST00000352993 CNGB1Q14028 1251 aaPredicted RBP10.48□□□□□ -0.73
BRCA1-201ENST00000352993 ZBTB47Q9UFB7 747 aaPredicted RBP10.48□□□□□ -0.73
BRCA1-201ENST00000352993 CUX1P39880 1505 aa10.47□□□□□ -0.73
BRCA1-201ENST00000352993 ARAP1Q96P48 1450 aa10.47□□□□□ -0.73
BRCA1-201ENST00000352993 SYNJ1O43426 1573 aa10.46□□□□□ -0.73
BRCA1-201ENST00000352993 IL27Q8NEV9 243 aa10.46□□□□□ -0.73
BRCA1-201ENST00000352993 RRBP1Q9P2E9 1410 aaKnown RBP10.46□□□□□ -0.74
BRCA1-201ENST00000352993 TONSLQ96HA7 1378 aa10.46□□□□□ -0.74
BRCA1-201ENST00000352993 NPM2Q86SE8 214 aaKnown RBP10.45□□□□□ -0.74
BRCA1-201ENST00000352993 SETD5Q9C0A6 1442 aa10.45□□□□□ -0.74
BRCA1-201ENST00000352993 ABCA10Q8WWZ4 1543 aa10.44□□□□□ -0.74
BRCA1-201ENST00000352993 ERICH6BQ5W0A0 696 aa10.43□□□□□ -0.74
BRCA1-201ENST00000352993 ADAMTS12P58397 1594 aa10.43□□□□□ -0.74
BRCA1-201ENST00000352993 EIF5BO60841 1220 aaKnown RBP10.42□□□□□ -0.74
BRCA1-201ENST00000352993 MAPKBP1O60336 1514 aa10.42□□□□□ -0.74
BRCA1-201ENST00000352993 TOP2BQ02880 1626 aa10.42□□□□□ -0.74
BRCA1-201ENST00000352993 KIF13AQ9H1H9 1805 aa10.42□□□□□ -0.74
BRCA1-201ENST00000352993 SENP3-EIF4A1A0A087X0R7 540 aa10.4□□□□□ -0.74
BRCA1-201ENST00000352993 IPO9Q96P70 1041 aaKnown RBP10.4□□□□□ -0.74
BRCA1-201ENST00000352993 MRS2Q9HD23 443 aa10.4□□□□□ -0.74
BRCA1-201ENST00000352993 LAS1LQ9Y4W2 734 aaKnown RBP10.4□□□□□ -0.74
BRCA1-201ENST00000352993 TIMELESSQ9UNS1 1208 aa10.39□□□□□ -0.75
BRCA1-201ENST00000352993 SYNJ2O15056 1496 aa10.39□□□□□ -0.75
BRCA1-201ENST00000352993 OSCARQ8IYS5 282 aa10.38□□□□□ -0.75
BRCA1-201ENST00000352993 P3H3Q8IVL6 736 aa10.37□□□□□ -0.75
BRCA1-201ENST00000352993 FGD5Q6ZNL6 1462 aa10.37□□□□□ -0.75
BRCA1-201ENST00000352993 NEFMP07197 916 aa10.37□□□□□ -0.75
BRCA1-201ENST00000352993 CCDC184Q52MB2 194 aa10.37□□□□□ -0.75
BRCA1-201ENST00000352993 GRIN2BQ13224 1484 aa10.36□□□□□ -0.75
BRCA1-201ENST00000352993 ERICH3Q5RHP9 1530 aa10.36□□□□□ -0.75
BRCA1-201ENST00000352993 CEP170Q5SW79 1584 aa10.34□□□□□ -0.75
BRCA1-201ENST00000352993 NUP160Q12769 1436 aa10.34□□□□□ -0.75
BRCA1-201ENST00000352993 POLR3GLQ9BT43 218 aa10.34□□□□□ -0.75
BRCA1-201ENST00000352993 SNAPC4Q5SXM2 1469 aa10.34□□□□□ -0.75
BRCA1-201ENST00000352993 HSPA5P11021 654 aaKnown RBP10.32□□□□□ -0.76
BRCA1-201ENST00000352993 PHLDB1Q86UU1 1377 aa10.29□□□□□ -0.76
BRCA1-201ENST00000352993 EIF4G2P78344 907 aaKnown RBP eCLIP10.29□□□□□ -0.76
BRCA1-201ENST00000352993 AQRO60306 1485 aaKnown RBP eCLIP10.29□□□□□ -0.764e-10■■■■■ 36.9
BRCA1-201ENST00000352993 WASHC2AQ641Q2 1341 aa10.29□□□□□ -0.76
BRCA1-201ENST00000352993 RAD54L2Q9Y4B4 1467 aa10.28□□□□□ -0.76
BRCA1-201ENST00000352993 ZBED9Q6R2W3 1325 aa10.28□□□□□ -0.76
BRCA1-201ENST00000352993 PRKRIP1Q9H875 184 aaPredicted RBP10.27□□□□□ -0.77
BRCA1-201ENST00000352993 ARHGAP35Q9NRY4 1499 aa10.27□□□□□ -0.77
BRCA1-201ENST00000352993 CUL7Q14999 1698 aa10.27□□□□□ -0.77
BRCA1-201ENST00000352993 PRXQ9BXM0 1461 aa10.26□□□□□ -0.77
BRCA1-201ENST00000352993 AKNAQ7Z591 1439 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms