RNA–Protein interactions for RNA: ENST00000348987.4

SCARF1-202, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best) BASIC

Gene SCARF1, Length 2,619 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-202ENST00000348987 ITGAEP38570 1179 aa26.82■■□□□ 1.88
SCARF1-202ENST00000348987 KCNH8Q96L42 1107 aa26.78■■□□□ 1.88
SCARF1-202ENST00000348987 CCNB3Q8WWL7 1395 aa26.76■■□□□ 1.87
SCARF1-202ENST00000348987 RAD54L2Q9Y4B4 1467 aa26.74■■□□□ 1.87
SCARF1-202ENST00000348987 CARMIL1Q5VZK9 1371 aa26.74■■□□□ 1.87
SCARF1-202ENST00000348987 P3H3Q8IVL6 736 aa26.71■■□□□ 1.87
SCARF1-202ENST00000348987 FKBP8Q14318 412 aa26.7■■□□□ 1.86
SCARF1-202ENST00000348987 RBM19Q9Y4C8 960 aaKnown RBP26.65■■□□□ 1.86
SCARF1-202ENST00000348987 TOPBP1Q92547 1522 aa26.6■■□□□ 1.85
SCARF1-202ENST00000348987 POLA1P09884 1462 aaPredicted RBP26.58■■□□□ 1.85
SCARF1-202ENST00000348987 DNMBPQ6XZF7 1577 aa26.58■■□□□ 1.84
SCARF1-202ENST00000348987 ATP1B4Q9UN42 357 aaPredicted RBP26.57■■□□□ 1.84
SCARF1-202ENST00000348987 TIAM1Q13009 1591 aa26.57■■□□□ 1.84
SCARF1-202ENST00000348987 RAB3GAP2Q9H2M9 1393 aa26.56■■□□□ 1.84
SCARF1-202ENST00000348987 PHLDB1Q86UU1 1377 aa26.54■■□□□ 1.84
SCARF1-202ENST00000348987 LRRC9Q6ZRR7 1453 aa26.51■■□□□ 1.83
SCARF1-202ENST00000348987 URB2Q14146 1524 aaKnown RBP26.49■■□□□ 1.83
SCARF1-202ENST00000348987 TDRD9Q8NDG6 1382 aaKnown RBP26.48■■□□□ 1.83
SCARF1-202ENST00000348987 FAM50AQ14320 339 aaKnown RBP26.48■■□□□ 1.83
SCARF1-202ENST00000348987 MAP3K1Q13233 1512 aa26.46■■□□□ 1.83
SCARF1-202ENST00000348987 LAMC3Q9Y6N6 1575 aa26.45■■□□□ 1.83
SCARF1-202ENST00000348987 FHOD3Q2V2M9 1422 aa26.45■■□□□ 1.83
SCARF1-202ENST00000348987 ABCA10Q8WWZ4 1543 aa26.44■■□□□ 1.82
SCARF1-202ENST00000348987 NEFLP07196 543 aa26.43■■□□□ 1.82
SCARF1-202ENST00000348987 MAPKBP1O60336 1514 aa26.43■■□□□ 1.82
SCARF1-202ENST00000348987 MSH5O43196 834 aa26.42■■□□□ 1.82
SCARF1-202ENST00000348987 PCF11O94913 1555 aaKnown RBP26.42■■□□□ 1.82
SCARF1-202ENST00000348987 FHAD1B1AJZ9 1412 aa26.41■■□□□ 1.82
SCARF1-202ENST00000348987 SETD5Q9C0A6 1442 aa26.39■■□□□ 1.81
SCARF1-202ENST00000348987 DDX10Q13206 875 aaKnown RBP26.37■■□□□ 1.81
SCARF1-202ENST00000348987 SIN3AQ96ST3 1273 aa26.36■■□□□ 1.81
SCARF1-202ENST00000348987 PDS5BQ9NTI5 1447 aa26.35■■□□□ 1.81
SCARF1-202ENST00000348987 KIF21AQ7Z4S6 1674 aa26.34■■□□□ 1.81
SCARF1-202ENST00000348987 TRIM52Q96A61 297 aa26.32■■□□□ 1.8
SCARF1-202ENST00000348987 CFAP43Q8NDM7 1665 aa26.28■■□□□ 1.8
SCARF1-202ENST00000348987 FYCO1Q9BQS8 1478 aa26.23■■□□□ 1.79
SCARF1-202ENST00000348987 CASKIN1Q8WXD9 1431 aa26.23■■□□□ 1.79
SCARF1-202ENST00000348987 WDR97A6NE52 1622 aa26.22■■□□□ 1.79
SCARF1-202ENST00000348987 GAPVD1Q14C86 1478 aa26.21■■□□□ 1.79
SCARF1-202ENST00000348987 EFCAB5A4FU69 1503 aa26.19■■□□□ 1.78
SCARF1-202ENST00000348987 CUL7Q14999 1698 aa26.19■■□□□ 1.78
SCARF1-202ENST00000348987 PPP1R15AO75807 674 aaPredicted RBP26.18■■□□□ 1.78
SCARF1-202ENST00000348987 ABCA5Q8WWZ7 1642 aa26.15■■□□□ 1.78
SCARF1-202ENST00000348987 ERICH6Q7L0X2 663 aa26.15■■□□□ 1.78
SCARF1-202ENST00000348987 FANCIQ9NVI1 1328 aa26.15■■□□□ 1.78
SCARF1-202ENST00000348987 HIRIP3Q9BW71 556 aaPredicted RBP26.14■■□□□ 1.77
SCARF1-202ENST00000348987 AQRO60306 1485 aaKnown RBP eCLIP26.14■■□□□ 1.77
SCARF1-202ENST00000348987 SNAPC4Q5SXM2 1469 aa26.12■■□□□ 1.77
SCARF1-202ENST00000348987 CTTNBP2Q8WZ74 1663 aa26.11■■□□□ 1.77
SCARF1-202ENST00000348987 FMN1Q68DA7 1419 aa26.11■■□□□ 1.77
SCARF1-202ENST00000348987 CCER2I3L3R5 266 aa26.1■■□□□ 1.77
SCARF1-202ENST00000348987 FGD6Q6ZV73 1430 aa26.1■■□□□ 1.77
SCARF1-202ENST00000348987 MTUS2Q5JR59 1369 aa26.09■■□□□ 1.77
SCARF1-202ENST00000348987 ANP32CO43423 234 aa26.08■■□□□ 1.77
SCARF1-202ENST00000348987 PTPRKQ15262 1439 aa26.07■■□□□ 1.76
SCARF1-202ENST00000348987 TARBP1Q13395 1621 aaKnown RBP26.06■■□□□ 1.76
SCARF1-202ENST00000348987 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.05■■□□□ 1.766e-8■■■■□ 21.9
SCARF1-202ENST00000348987 ARID3CA6NKF2 412 aa26.05■■□□□ 1.76
SCARF1-202ENST00000348987 CDK11AQ9UQ88 783 aaPredicted RBP26.05■■□□□ 1.76
SCARF1-202ENST00000348987 IRX6P78412 446 aaPredicted RBP26.01■■□□□ 1.76
SCARF1-202ENST00000348987 PRKCSHP14314 528 aaPredicted RBP25.99■■□□□ 1.75
SCARF1-202ENST00000348987 MRC2Q9UBG0 1479 aa25.98■■□□□ 1.75
SCARF1-202ENST00000348987 LRRIQ1Q96JM4 1722 aa25.97■■□□□ 1.75
SCARF1-202ENST00000348987 SAMD9Q5K651 1589 aa25.97■■□□□ 1.75
SCARF1-202ENST00000348987 TIMELESSQ9UNS1 1208 aa25.96■■□□□ 1.75
SCARF1-202ENST00000348987 NCOA2Q15596 1464 aa25.96■■□□□ 1.75
SCARF1-202ENST00000348987 CCDC18Q5T9S5 1454 aa25.95■■□□□ 1.74
SCARF1-202ENST00000348987 GRIN2BQ13224 1484 aa25.95■■□□□ 1.74
SCARF1-202ENST00000348987 ZNF608Q9ULD9 1512 aaPredicted RBP25.93■■□□□ 1.74
SCARF1-202ENST00000348987 HFM1A2PYH4 1435 aa25.92■■□□□ 1.74
SCARF1-202ENST00000348987 DEKP35659 375 aaKnown RBP25.92■■□□□ 1.74
SCARF1-202ENST00000348987 MYOM3Q5VTT5 1437 aa25.9■■□□□ 1.74
SCARF1-202ENST00000348987 PBRM1Q86U86 1689 aa25.9■■□□□ 1.74
SCARF1-202ENST00000348987 NAIPQ13075 1403 aa25.88■■□□□ 1.73
SCARF1-202ENST00000348987 TONSLQ96HA7 1378 aa25.87■■□□□ 1.73
SCARF1-202ENST00000348987 MYT1LQ9UL68 1186 aa25.87■■□□□ 1.73
SCARF1-202ENST00000348987 HNRNPUQ00839 825 aaKnown RBP eCLIP25.86■■□□□ 1.73
SCARF1-202ENST00000348987 MAGI3Q5TCQ9 1506 aa25.86■■□□□ 1.73
SCARF1-202ENST00000348987 UACAQ9BZF9 1416 aa25.86■■□□□ 1.73
SCARF1-202ENST00000348987 PTPN23Q9H3S7 1636 aa25.86■■□□□ 1.73
SCARF1-202ENST00000348987 CHIC2Q9UKJ5 165 aa25.85■■□□□ 1.73
SCARF1-202ENST00000348987 RRP7BPQ9NSQ0 103 aa25.84■■□□□ 1.73
SCARF1-202ENST00000348987 ERCC6Q03468 1493 aa25.79■■□□□ 1.72
SCARF1-202ENST00000348987 ADAMTS12P58397 1594 aa25.79■■□□□ 1.72
SCARF1-202ENST00000348987 EHBP1L1Q8N3D4 1523 aa25.78■■□□□ 1.72
SCARF1-202ENST00000348987 SUPT6HQ7KZ85 1726 aaKnown RBP25.78■■□□□ 1.72
SCARF1-202ENST00000348987 UGGT2Q9NYU1 1516 aa25.77■■□□□ 1.72
SCARF1-202ENST00000348987 THOC2Q8NI27 1593 aaKnown RBP25.75■■□□□ 1.71
SCARF1-202ENST00000348987 IFT140Q96RY7 1462 aa25.74■■□□□ 1.71
SCARF1-202ENST00000348987 WDR62O43379 1518 aa25.74■■□□□ 1.71
SCARF1-202ENST00000348987 ARHGEF11O15085 1522 aa25.73■■□□□ 1.71
SCARF1-202ENST00000348987 FBLN2P98095 1184 aa25.73■■□□□ 1.71
SCARF1-202ENST00000348987 PPP4R2Q9NY27 417 aa25.72■■□□□ 1.71
SCARF1-202ENST00000348987 IQGAP2Q13576 1575 aa25.72■■□□□ 1.71
SCARF1-202ENST00000348987 CDK13Q14004 1512 aaKnown RBP25.7■■□□□ 1.7
SCARF1-202ENST00000348987 NBR1Q14596 966 aa25.69■■□□□ 1.7
SCARF1-202ENST00000348987 KDM5BQ9UGL1 1544 aa25.69■■□□□ 1.7
SCARF1-202ENST00000348987 EPRSP07814 1512 aaKnown RBP25.68■■□□□ 1.7
SCARF1-202ENST00000348987 DENND4BO75064 1496 aaPredicted RBP25.67■■□□□ 1.7
SCARF1-202ENST00000348987 ERICH6BQ5W0A0 696 aa25.67■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 131.1 ms