RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 RAB3GAP2Q9H2M9 1393 aa15.82■□□□□ 0.12
SYNE1-202ENST00000347037 FANCD2Q9BXW9 1451 aa15.8■□□□□ 0.12
SYNE1-202ENST00000347037 WDR97A6NE52 1622 aa15.79■□□□□ 0.12
SYNE1-202ENST00000347037 SIN3AQ96ST3 1273 aa15.79■□□□□ 0.12
SYNE1-202ENST00000347037 HIRIP3Q9BW71 556 aaPredicted RBP15.78■□□□□ 0.12
SYNE1-202ENST00000347037 KIF27Q86VH2 1401 aa15.78■□□□□ 0.12
SYNE1-202ENST00000347037 FAM50AQ14320 339 aaKnown RBP15.78■□□□□ 0.12
SYNE1-202ENST00000347037 DNMBPQ6XZF7 1577 aa15.77■□□□□ 0.12
SYNE1-202ENST00000347037 ATP1B4Q9UN42 357 aaPredicted RBP15.76■□□□□ 0.11
SYNE1-202ENST00000347037 NEFLP07196 543 aa15.76■□□□□ 0.11
SYNE1-202ENST00000347037 CUX2O14529 1486 aa15.75■□□□□ 0.11
SYNE1-202ENST00000347037 ARHGAP35Q9NRY4 1499 aa15.75■□□□□ 0.11
SYNE1-202ENST00000347037 TRIM52Q96A61 297 aa15.74■□□□□ 0.11
SYNE1-202ENST00000347037 URB2Q14146 1524 aaKnown RBP15.72■□□□□ 0.11
SYNE1-202ENST00000347037 MAPKBP1O60336 1514 aa15.72■□□□□ 0.11
SYNE1-202ENST00000347037 TOPBP1Q92547 1522 aa15.71■□□□□ 0.11
SYNE1-202ENST00000347037 SETD5Q9C0A6 1442 aa15.71■□□□□ 0.1
SYNE1-202ENST00000347037 FGD5Q6ZNL6 1462 aa15.7■□□□□ 0.1
SYNE1-202ENST00000347037 P3H3Q8IVL6 736 aa15.68■□□□□ 0.1
SYNE1-202ENST00000347037 ANP32CO43423 234 aa15.67■□□□□ 0.1
SYNE1-202ENST00000347037 PPP1R15AO75807 674 aaPredicted RBP15.64■□□□□ 0.09
SYNE1-202ENST00000347037 POLA1P09884 1462 aaPredicted RBP15.64■□□□□ 0.09
SYNE1-202ENST00000347037 RBM19Q9Y4C8 960 aaKnown RBP15.63■□□□□ 0.09
SYNE1-202ENST00000347037 PHLDB1Q86UU1 1377 aa15.63■□□□□ 0.09
SYNE1-202ENST00000347037 TARBP1Q13395 1621 aaKnown RBP15.62■□□□□ 0.09
SYNE1-202ENST00000347037 ABCA10Q8WWZ4 1543 aa15.61■□□□□ 0.09
SYNE1-202ENST00000347037 TIAM1Q13009 1591 aa15.61■□□□□ 0.09
SYNE1-202ENST00000347037 ABCA5Q8WWZ7 1642 aa15.6■□□□□ 0.09
SYNE1-202ENST00000347037 LRRC9Q6ZRR7 1453 aa15.59■□□□□ 0.09
SYNE1-202ENST00000347037 PDS5BQ9NTI5 1447 aa15.58■□□□□ 0.09
SYNE1-202ENST00000347037 BCL11AQ9H165 835 aa15.58■□□□□ 0.08
SYNE1-202ENST00000347037 IGF1RP08069 1367 aa15.57■□□□□ 0.08
SYNE1-202ENST00000347037 CCER2I3L3R5 266 aa15.57■□□□□ 0.08
SYNE1-202ENST00000347037 THOC2Q8NI27 1593 aaKnown RBP15.56■□□□□ 0.08
SYNE1-202ENST00000347037 CARMIL1Q5VZK9 1371 aa15.56■□□□□ 0.08
SYNE1-202ENST00000347037 RAD54L2Q9Y4B4 1467 aa15.55■□□□□ 0.08
SYNE1-202ENST00000347037 WDR62O43379 1518 aa15.55■□□□□ 0.08
SYNE1-202ENST00000347037 TONSLQ96HA7 1378 aa15.53■□□□□ 0.08
SYNE1-202ENST00000347037 IRX6P78412 446 aaPredicted RBP15.53■□□□□ 0.08
SYNE1-202ENST00000347037 TIMELESSQ9UNS1 1208 aa15.53■□□□□ 0.08
SYNE1-202ENST00000347037 HNRNPUQ00839 825 aaKnown RBP eCLIP15.5■□□□□ 0.07
SYNE1-202ENST00000347037 MAP3K1Q13233 1512 aa15.5■□□□□ 0.07
SYNE1-202ENST00000347037 FHAD1B1AJZ9 1412 aa15.5■□□□□ 0.07
SYNE1-202ENST00000347037 MRC2Q9UBG0 1479 aa15.49■□□□□ 0.07
SYNE1-202ENST00000347037 CUL7Q14999 1698 aa15.48■□□□□ 0.07
SYNE1-202ENST00000347037 PBRM1Q86U86 1689 aa15.47■□□□□ 0.07
SYNE1-202ENST00000347037 FHOD3Q2V2M9 1422 aa15.47■□□□□ 0.07
SYNE1-202ENST00000347037 PCF11O94913 1555 aaKnown RBP15.46■□□□□ 0.06
SYNE1-202ENST00000347037 ERICH6Q7L0X2 663 aa15.45■□□□□ 0.06
SYNE1-202ENST00000347037 CDK11AQ9UQ88 783 aaPredicted RBP15.44■□□□□ 0.06
SYNE1-202ENST00000347037 MSH5O43196 834 aa15.43■□□□□ 0.06
SYNE1-202ENST00000347037 CTTNBP2Q8WZ74 1663 aa15.4■□□□□ 0.06
SYNE1-202ENST00000347037 CFAP43Q8NDM7 1665 aa15.39■□□□□ 0.05
SYNE1-202ENST00000347037 CCDC18Q5T9S5 1454 aa15.39■□□□□ 0.05
SYNE1-202ENST00000347037 MTUS2Q5JR59 1369 aa15.37■□□□□ 0.05
SYNE1-202ENST00000347037 FGD6Q6ZV73 1430 aa15.35■□□□□ 0.05
SYNE1-202ENST00000347037 FYCO1Q9BQS8 1478 aa15.34■□□□□ 0.05
SYNE1-202ENST00000347037 GAPVD1Q14C86 1478 aa15.33■□□□□ 0.05
SYNE1-202ENST00000347037 CASKIN1Q8WXD9 1431 aa15.33■□□□□ 0.04
SYNE1-202ENST00000347037 HSPA5P11021 654 aaKnown RBP15.33■□□□□ 0.04
SYNE1-202ENST00000347037 ADAMTS12P58397 1594 aa15.32■□□□□ 0.04
SYNE1-202ENST00000347037 UACAQ9BZF9 1416 aa15.32■□□□□ 0.04
SYNE1-202ENST00000347037 CHIC2Q9UKJ5 165 aa15.32■□□□□ 0.04
SYNE1-202ENST00000347037 RRP7BPQ9NSQ0 103 aa15.32■□□□□ 0.04
SYNE1-202ENST00000347037 PTPRKQ15262 1439 aa15.32■□□□□ 0.04
SYNE1-202ENST00000347037 FAM9BQ8IZU0 186 aa15.31■□□□□ 0.04
SYNE1-202ENST00000347037 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.31■□□□□ 0.04
SYNE1-202ENST00000347037 EIF4G3O43432 1585 aaKnown RBP15.31■□□□□ 0.04
SYNE1-202ENST00000347037 WASHC2AQ641Q2 1341 aa15.3■□□□□ 0.04
SYNE1-202ENST00000347037 IFT140Q96RY7 1462 aa15.3■□□□□ 0.04
SYNE1-202ENST00000347037 FANCIQ9NVI1 1328 aa15.3■□□□□ 0.04
SYNE1-202ENST00000347037 ZNF608Q9ULD9 1512 aaPredicted RBP15.29■□□□□ 0.04
SYNE1-202ENST00000347037 HFM1A2PYH4 1435 aa15.29■□□□□ 0.04
SYNE1-202ENST00000347037 CCDC184Q52MB2 194 aa15.28■□□□□ 0.04
SYNE1-202ENST00000347037 TDRD9Q8NDG6 1382 aaKnown RBP15.27■□□□□ 0.04
SYNE1-202ENST00000347037 EIF4G2P78344 907 aaKnown RBP eCLIP15.27■□□□□ 0.03
SYNE1-202ENST00000347037 B4GALNT3Q6L9W6 998 aa15.27■□□□□ 0.03
SYNE1-202ENST00000347037 PPP4R2Q9NY27 417 aa15.27■□□□□ 0.03
SYNE1-202ENST00000347037 PTPN23Q9H3S7 1636 aa15.26■□□□□ 0.03
SYNE1-202ENST00000347037 AQRO60306 1485 aaKnown RBP eCLIP15.26■□□□□ 0.03
SYNE1-202ENST00000347037 CNGB1Q14028 1251 aaPredicted RBP15.26■□□□□ 0.03
SYNE1-202ENST00000347037 NAIPQ13075 1403 aa15.26■□□□□ 0.03
SYNE1-202ENST00000347037 FMN1Q68DA7 1419 aa15.26■□□□□ 0.03
SYNE1-202ENST00000347037 SAMD9Q5K651 1589 aa15.26■□□□□ 0.03
SYNE1-202ENST00000347037 MRS2Q9HD23 443 aa15.25■□□□□ 0.03
SYNE1-202ENST00000347037 EFCAB5A4FU69 1503 aa15.25■□□□□ 0.03
SYNE1-202ENST00000347037 FOXD1Q16676 465 aa15.22■□□□□ 0.03
SYNE1-202ENST00000347037 NCOA2Q15596 1464 aa15.22■□□□□ 0.03
SYNE1-202ENST00000347037 LRRIQ1Q96JM4 1722 aa15.21■□□□□ 0.03
SYNE1-202ENST00000347037 MYOM3Q5VTT5 1437 aa15.21■□□□□ 0.03
SYNE1-202ENST00000347037 ERCC6Q03468 1493 aa15.21■□□□□ 0.03
SYNE1-202ENST00000347037 GRIN2BQ13224 1484 aa15.19■□□□□ 0.02
SYNE1-202ENST00000347037 ARID3CA6NKF2 412 aa15.19■□□□□ 0.02
SYNE1-202ENST00000347037 C11orf95C9JLR9 678 aaPredicted RBP15.18■□□□□ 0.02
SYNE1-202ENST00000347037 ERICH6BQ5W0A0 696 aa15.18■□□□□ 0.02
SYNE1-202ENST00000347037 L3MBTL2Q969R5 705 aa15.18■□□□□ 0.02
SYNE1-202ENST00000347037 PRKRIP1Q9H875 184 aaPredicted RBP15.18■□□□□ 0.02
SYNE1-202ENST00000347037 CNTLNQ9NXG0 1405 aa15.18■□□□□ 0.02
SYNE1-202ENST00000347037 SNAPC4Q5SXM2 1469 aa15.18■□□□□ 0.02
SYNE1-202ENST00000347037 KDM5BQ9UGL1 1544 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms