RNA–Protein interactions for RNA: ENST00000343053.4

NELFB-201, Transcript of negative elongation factor complex member B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NELFB, Length 2,698 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFB-201ENST00000343053 MAPKBP1O60336 1514 aa34.78■■■■□ 3.16
NELFB-201ENST00000343053 SIN3AQ96ST3 1273 aa34.74■■■■□ 3.15
NELFB-201ENST00000343053 RAD54L2Q9Y4B4 1467 aa34.74■■■■□ 3.15
NELFB-201ENST00000343053 PCF11O94913 1555 aaKnown RBP34.73■■■■□ 3.15
NELFB-201ENST00000343053 FHOD3Q2V2M9 1422 aa34.72■■■■□ 3.15
NELFB-201ENST00000343053 KCNH8Q96L42 1107 aa34.7■■■■□ 3.15
NELFB-201ENST00000343053 FANCD2Q9BXW9 1451 aa34.7■■■■□ 3.15
NELFB-201ENST00000343053 CC2D2AQ9P2K1 1620 aa34.69■■■■□ 3.14
NELFB-201ENST00000343053 SETD5Q9C0A6 1442 aa34.68■■■■□ 3.14
NELFB-201ENST00000343053 MAP3K1Q13233 1512 aa34.61■■■■□ 3.13
NELFB-201ENST00000343053 FHAD1B1AJZ9 1412 aa34.61■■■■□ 3.13
NELFB-201ENST00000343053 NESP48681 1621 aa34.59■■■■□ 3.13
NELFB-201ENST00000343053 CFAP43Q8NDM7 1665 aa34.57■■■■□ 3.13
NELFB-201ENST00000343053 HIRIP3Q9BW71 556 aaPredicted RBP34.57■■■■□ 3.12
NELFB-201ENST00000343053 WDR97A6NE52 1622 aa34.56■■■■□ 3.12
NELFB-201ENST00000343053 SUPT16HQ9Y5B9 1047 aaKnown RBP34.54■■■■□ 3.12
NELFB-201ENST00000343053 POLA1P09884 1462 aaPredicted RBP34.52■■■■□ 3.12
NELFB-201ENST00000343053 DDX10Q13206 875 aaKnown RBP34.51■■■■□ 3.11
NELFB-201ENST00000343053 TOPBP1Q92547 1522 aa34.47■■■■□ 3.11
NELFB-201ENST00000343053 DNMBPQ6XZF7 1577 aa34.46■■■■□ 3.11
NELFB-201ENST00000343053 MYT1Q01538 1121 aa34.45■■■■□ 3.11
NELFB-201ENST00000343053 ABCA10Q8WWZ4 1543 aa34.42■■■■□ 3.1
NELFB-201ENST00000343053 FYCO1Q9BQS8 1478 aa34.39■■■■□ 3.1
NELFB-201ENST00000343053 CASKIN1Q8WXD9 1431 aa34.34■■■■□ 3.09
NELFB-201ENST00000343053 CTTNBP2Q8WZ74 1663 aa34.33■■■■□ 3.09
NELFB-201ENST00000343053 TDRD9Q8NDG6 1382 aaKnown RBP34.31■■■■□ 3.08
NELFB-201ENST00000343053 EFCAB5A4FU69 1503 aa34.29■■■■□ 3.08
NELFB-201ENST00000343053 MTUS2Q5JR59 1369 aa34.27■■■■□ 3.08
NELFB-201ENST00000343053 CUL7Q14999 1698 aa34.26■■■■□ 3.07
NELFB-201ENST00000343053 FGD6Q6ZV73 1430 aa34.25■■■■□ 3.07
NELFB-201ENST00000343053 BCANQ96GW7 911 aa34.24■■■■□ 3.07
NELFB-201ENST00000343053 URB2Q14146 1524 aaKnown RBP34.21■■■■□ 3.07
NELFB-201ENST00000343053 PPP1R15AO75807 674 aaPredicted RBP34.19■■■■□ 3.06
NELFB-201ENST00000343053 SNAPC4Q5SXM2 1469 aa34.19■■■■□ 3.06
NELFB-201ENST00000343053 FMN1Q68DA7 1419 aa34.19■■■■□ 3.06
NELFB-201ENST00000343053 PTPRKQ15262 1439 aa34.19■■■■□ 3.06
NELFB-201ENST00000343053 AQRO60306 1485 aaKnown RBP eCLIP34.17■■■■□ 3.066e-7■■■■□ 21.2
NELFB-201ENST00000343053 CCDC18Q5T9S5 1454 aa34.16■■■■□ 3.06
NELFB-201ENST00000343053 LRRIQ1Q96JM4 1722 aa34.15■■■■□ 3.06
NELFB-201ENST00000343053 DNAJC5BQ9UF47 199 aa34.13■■■■□ 3.05
NELFB-201ENST00000343053 TONSLQ96HA7 1378 aa34.12■■■■□ 3.05
NELFB-201ENST00000343053 TRIM52Q96A61 297 aa34.09■■■■□ 3.05
NELFB-201ENST00000343053 ARID3CA6NKF2 412 aa34.06■■■■□ 3.04
NELFB-201ENST00000343053 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.05■■■■□ 3.049e-8■□□□□ 8.7
NELFB-201ENST00000343053 NCOA2Q15596 1464 aa34.05■■■■□ 3.04
NELFB-201ENST00000343053 GAPVD1Q14C86 1478 aa34.05■■■■□ 3.04
NELFB-201ENST00000343053 CHIC2Q9UKJ5 165 aa34.03■■■■□ 3.04
NELFB-201ENST00000343053 TIMELESSQ9UNS1 1208 aa34.03■■■■□ 3.04
NELFB-201ENST00000343053 FKBP8Q14318 412 aa34.02■■■■□ 3.04
NELFB-201ENST00000343053 PTPN23Q9H3S7 1636 aa34.02■■■■□ 3.04
NELFB-201ENST00000343053 ABCA5Q8WWZ7 1642 aa34■■■■□ 3.03
NELFB-201ENST00000343053 RRP7BPQ9NSQ0 103 aa34■■■■□ 3.03
NELFB-201ENST00000343053 ANP32CO43423 234 aa33.99■■■■□ 3.03
NELFB-201ENST00000343053 TSHZ2Q9NRE2 1034 aa33.99■■■■□ 3.03
NELFB-201ENST00000343053 SAMD9Q5K651 1589 aa33.99■■■■□ 3.03
NELFB-201ENST00000343053 HFM1A2PYH4 1435 aa33.99■■■■□ 3.03
NELFB-201ENST00000343053 MYOM3Q5VTT5 1437 aa33.97■■■■□ 3.03
NELFB-201ENST00000343053 UACAQ9BZF9 1416 aa33.96■■■■□ 3.03
NELFB-201ENST00000343053 GRIN2BQ13224 1484 aa33.96■■■■□ 3.03
NELFB-201ENST00000343053 NAIPQ13075 1403 aa33.96■■■■□ 3.03
NELFB-201ENST00000343053 LAMC3Q9Y6N6 1575 aa33.94■■■■□ 3.02
NELFB-201ENST00000343053 SUPT6HQ7KZ85 1726 aaKnown RBP33.9■■■■□ 3.02
NELFB-201ENST00000343053 MAGI3Q5TCQ9 1506 aa33.9■■■■□ 3.02
NELFB-201ENST00000343053 KIF21AQ7Z4S6 1674 aa33.86■■■■□ 3.01
NELFB-201ENST00000343053 EHBP1L1Q8N3D4 1523 aa33.83■■■■□ 3.01
NELFB-201ENST00000343053 PDS5BQ9NTI5 1447 aa33.79■■■■□ 3
NELFB-201ENST00000343053 CCER2I3L3R5 266 aa33.79■■■■□ 3
NELFB-201ENST00000343053 UGGT2Q9NYU1 1516 aa33.78■■■■□ 3
NELFB-201ENST00000343053 FOXD1Q16676 465 aa33.76■■■□□ 2.99
NELFB-201ENST00000343053 CDK13Q14004 1512 aaKnown RBP33.74■■■□□ 2.99
NELFB-201ENST00000343053 NEFLP07196 543 aa33.73■■■□□ 2.99
NELFB-201ENST00000343053 KDM6BO15054 1643 aa33.73■■■□□ 2.99
NELFB-201ENST00000343053 KDM5BQ9UGL1 1544 aa33.72■■■□□ 2.99
NELFB-201ENST00000343053 THOC2Q8NI27 1593 aaKnown RBP33.72■■■□□ 2.99
NELFB-201ENST00000343053 TARBP1Q13395 1621 aaKnown RBP33.69■■■□□ 2.98
NELFB-201ENST00000343053 HSPA5P11021 654 aaKnown RBP33.66■■■□□ 2.98
NELFB-201ENST00000343053 DENND4BO75064 1496 aaPredicted RBP33.65■■■□□ 2.98
NELFB-201ENST00000343053 ARHGEF11O15085 1522 aa33.65■■■□□ 2.98
NELFB-201ENST00000343053 EPRSP07814 1512 aaKnown RBP33.63■■■□□ 2.97
NELFB-201ENST00000343053 PBRM1Q86U86 1689 aa33.62■■■□□ 2.97
NELFB-201ENST00000343053 HECW1Q76N89 1606 aa33.62■■■□□ 2.97
NELFB-201ENST00000343053 WASHC2AQ641Q2 1341 aa33.61■■■□□ 2.97
NELFB-201ENST00000343053 HNRNPUQ00839 825 aaKnown RBP eCLIP33.6■■■□□ 2.97
NELFB-201ENST00000343053 IQGAP2Q13576 1575 aa33.6■■■□□ 2.97
NELFB-201ENST00000343053 GCC2Q8IWJ2 1684 aa33.57■■■□□ 2.96
NELFB-201ENST00000343053 MPHOSPH9Q99550 1183 aa33.56■■■□□ 2.96
NELFB-201ENST00000343053 IRX6P78412 446 aaPredicted RBP33.55■■■□□ 2.96
NELFB-201ENST00000343053 TCOF1Q13428 1488 aaKnown RBP33.54■■■□□ 2.96
NELFB-201ENST00000343053 L3MBTL2Q969R5 705 aa33.52■■■□□ 2.96
NELFB-201ENST00000343053 ZNF644Q9H582 1327 aaPredicted RBP33.5■■■□□ 2.95
NELFB-201ENST00000343053 ADAMTS12P58397 1594 aa33.49■■■□□ 2.95
NELFB-201ENST00000343053 EIF4G2P78344 907 aaKnown RBP eCLIP33.47■■■□□ 2.95
NELFB-201ENST00000343053 WDR62O43379 1518 aa33.47■■■□□ 2.95
NELFB-201ENST00000343053 CCDC184Q52MB2 194 aa33.46■■■□□ 2.95
NELFB-201ENST00000343053 C11orf95C9JLR9 678 aaPredicted RBP33.44■■■□□ 2.94
NELFB-201ENST00000343053 ZNF608Q9ULD9 1512 aaPredicted RBP33.41■■■□□ 2.94
NELFB-201ENST00000343053 CNGB1Q14028 1251 aaPredicted RBP33.37■■■□□ 2.93
NELFB-201ENST00000343053 MIA2Q96PC5 1412 aa33.37■■■□□ 2.93
NELFB-201ENST00000343053 NBPF8Q3BBV2 869 aa33.36■■■□□ 2.93
NELFB-201ENST00000343053 AKNAQ7Z591 1439 aa33.35■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms