RNA–Protein interactions for RNA: ENST00000339570.9

SCARB1-202, Transcript of scavenger receptor class B member 1, humanhuman

TSL 5 BASIC

Gene SCARB1, Length 3,329 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-202ENST00000339570 CUX2O14529 1486 aa22.83■■□□□ 1.25
SCARB1-202ENST00000339570 ANP32EQ9BTT0 268 aa22.83■■□□□ 1.25
SCARB1-202ENST00000339570 PHLDB1Q86UU1 1377 aa22.82■■□□□ 1.24
SCARB1-202ENST00000339570 SETD5Q9C0A6 1442 aa22.8■■□□□ 1.24
SCARB1-202ENST00000339570 WDR97A6NE52 1622 aa22.8■■□□□ 1.24
SCARB1-202ENST00000339570 ERICH3Q5RHP9 1530 aa22.77■■□□□ 1.24
SCARB1-202ENST00000339570 ARID3CA6NKF2 412 aa22.75■■□□□ 1.23
SCARB1-202ENST00000339570 MAPKBP1O60336 1514 aa22.74■■□□□ 1.23
SCARB1-202ENST00000339570 CARMIL1Q5VZK9 1371 aa22.72■■□□□ 1.23
SCARB1-202ENST00000339570 IGF1RP08069 1367 aa22.72■■□□□ 1.23
SCARB1-202ENST00000339570 HNRNPUQ00839 825 aaKnown RBP eCLIP22.71■■□□□ 1.232e-6■□□□□ 11
SCARB1-202ENST00000339570 RBM19Q9Y4C8 960 aaKnown RBP22.71■■□□□ 1.23
SCARB1-202ENST00000339570 PPP1R15AO75807 674 aaPredicted RBP22.7■■□□□ 1.22
SCARB1-202ENST00000339570 CHIC2Q9UKJ5 165 aa22.7■■□□□ 1.22
SCARB1-202ENST00000339570 SENP3-EIF4A1A0A087X0R7 540 aa22.69■■□□□ 1.22
SCARB1-202ENST00000339570 BIVM-ERCC5R4GMW8 1640 aa22.68■■□□□ 1.22
SCARB1-202ENST00000339570 FHOD3Q2V2M9 1422 aa22.67■■□□□ 1.22
SCARB1-202ENST00000339570 TONSLQ96HA7 1378 aa22.67■■□□□ 1.22
SCARB1-202ENST00000339570 LRRC9Q6ZRR7 1453 aa22.61■■□□□ 1.21
SCARB1-202ENST00000339570 RRP7BPQ9NSQ0 103 aa22.6■■□□□ 1.21
SCARB1-202ENST00000339570 TIAM1Q13009 1591 aa22.57■■□□□ 1.2
SCARB1-202ENST00000339570 POLR3GLQ9BT43 218 aa22.55■■□□□ 1.2
SCARB1-202ENST00000339570 FOXD1Q16676 465 aa22.54■■□□□ 1.2
SCARB1-202ENST00000339570 FAM9BQ8IZU0 186 aa22.53■■□□□ 1.2
SCARB1-202ENST00000339570 CFTRP13569 1480 aa22.51■■□□□ 1.19
SCARB1-202ENST00000339570 FGD5Q6ZNL6 1462 aa22.51■■□□□ 1.19
SCARB1-202ENST00000339570 MTUS2Q5JR59 1369 aa22.5■■□□□ 1.19
SCARB1-202ENST00000339570 ERICH6Q7L0X2 663 aa22.49■■□□□ 1.19
SCARB1-202ENST00000339570 BCL11AQ9H165 835 aa22.49■■□□□ 1.19
SCARB1-202ENST00000339570 NCAPD3P42695 1498 aa22.48■■□□□ 1.19
SCARB1-202ENST00000339570 RAD54L2Q9Y4B4 1467 aa22.47■■□□□ 1.19
SCARB1-202ENST00000339570 CCDC184Q52MB2 194 aa22.46■■□□□ 1.19
SCARB1-202ENST00000339570 CCER2I3L3R5 266 aa22.46■■□□□ 1.19
SCARB1-202ENST00000339570 FHAD1B1AJZ9 1412 aa22.44■■□□□ 1.18
SCARB1-202ENST00000339570 PCF11O94913 1555 aaKnown RBP22.43■■□□□ 1.18
SCARB1-202ENST00000339570 MSH5O43196 834 aa22.43■■□□□ 1.18
SCARB1-202ENST00000339570 HSPA5P11021 654 aaKnown RBP22.42■■□□□ 1.18
SCARB1-202ENST00000339570 CDK11AQ9UQ88 783 aaPredicted RBP22.41■■□□□ 1.18
SCARB1-202ENST00000339570 B4GALNT3Q6L9W6 998 aa22.38■■□□□ 1.17
SCARB1-202ENST00000339570 CADPSQ9ULU8 1353 aa22.38■■□□□ 1.17
SCARB1-202ENST00000339570 ZNF326Q5BKZ1 582 aaKnown RBP22.36■■□□□ 1.17
SCARB1-202ENST00000339570 CCDC18Q5T9S5 1454 aa22.36■■□□□ 1.17
SCARB1-202ENST00000339570 PTPRKQ15262 1439 aa22.35■■□□□ 1.17
SCARB1-202ENST00000339570 WASHC2AQ641Q2 1341 aa22.33■■□□□ 1.16
SCARB1-202ENST00000339570 TDRD9Q8NDG6 1382 aaKnown RBP22.32■■□□□ 1.16
SCARB1-202ENST00000339570 TIMELESSQ9UNS1 1208 aa22.32■■□□□ 1.16
SCARB1-202ENST00000339570 MRS2Q9HD23 443 aa22.32■■□□□ 1.16
SCARB1-202ENST00000339570 HMGXB3Q12766 1538 aa22.32■■□□□ 1.16
SCARB1-202ENST00000339570 FGD6Q6ZV73 1430 aa22.31■■□□□ 1.16
SCARB1-202ENST00000339570 AQRO60306 1485 aaKnown RBP eCLIP22.3■■□□□ 1.167e-7■■■■■ 33.9
SCARB1-202ENST00000339570 C11orf95C9JLR9 678 aaPredicted RBP22.27■■□□□ 1.16
SCARB1-202ENST00000339570 EIF4G2P78344 907 aaKnown RBP eCLIP22.27■■□□□ 1.162e-9■■■■□ 23.9
SCARB1-202ENST00000339570 L3MBTL2Q969R5 705 aa22.24■■□□□ 1.15
SCARB1-202ENST00000339570 NESP48681 1621 aa22.22■■□□□ 1.15
SCARB1-202ENST00000339570 FANCD2Q9BXW9 1451 aa22.22■■□□□ 1.15
SCARB1-202ENST00000339570 NBR1Q14596 966 aa22.2■■□□□ 1.14
SCARB1-202ENST00000339570 CASKIN1Q8WXD9 1431 aa22.19■■□□□ 1.14
SCARB1-202ENST00000339570 MAP3K1Q13233 1512 aa22.19■■□□□ 1.14
SCARB1-202ENST00000339570 UACAQ9BZF9 1416 aa22.18■■□□□ 1.14
SCARB1-202ENST00000339570 NAIPQ13075 1403 aa22.17■■□□□ 1.14
SCARB1-202ENST00000339570 MPHOSPH9Q99550 1183 aa22.16■■□□□ 1.14
SCARB1-202ENST00000339570 SALL2Q9Y467 1007 aaPredicted RBP22.15■■□□□ 1.14
SCARB1-202ENST00000339570 FYCO1Q9BQS8 1478 aa22.15■■□□□ 1.14
SCARB1-202ENST00000339570 NCOA2Q15596 1464 aa22.14■■□□□ 1.13
SCARB1-202ENST00000339570 HFM1A2PYH4 1435 aa22.12■■□□□ 1.13
SCARB1-202ENST00000339570 FMN1Q68DA7 1419 aa22.12■■□□□ 1.13
SCARB1-202ENST00000339570 PPP4R2Q9NY27 417 aa22.12■■□□□ 1.13
SCARB1-202ENST00000339570 POLA1P09884 1462 aaPredicted RBP22.12■■□□□ 1.13
SCARB1-202ENST00000339570 PRKRIP1Q9H875 184 aaPredicted RBP22.11■■□□□ 1.13
SCARB1-202ENST00000339570 CFAP43Q8NDM7 1665 aa22.11■■□□□ 1.13
SCARB1-202ENST00000339570 NBPF8Q3BBV2 869 aa22.1■■□□□ 1.13
SCARB1-202ENST00000339570 ZNF777Q9ULD5 760 aaPredicted RBP22.1■■□□□ 1.13
SCARB1-202ENST00000339570 SLC4A1APQ9BWU0 796 aaKnown RBP22.09■■□□□ 1.13
SCARB1-202ENST00000339570 DNAJC5BQ9UF47 199 aa22.09■■□□□ 1.13
SCARB1-202ENST00000339570 ZNF644Q9H582 1327 aaPredicted RBP22.08■■□□□ 1.13
SCARB1-202ENST00000339570 MYOM3Q5VTT5 1437 aa22.08■■□□□ 1.12
SCARB1-202ENST00000339570 PTPN23Q9H3S7 1636 aa22.07■■□□□ 1.12
SCARB1-202ENST00000339570 TOPBP1Q92547 1522 aa22.02■■□□□ 1.12
SCARB1-202ENST00000339570 NPM2Q86SE8 214 aaKnown RBP21.99■■□□□ 1.11
SCARB1-202ENST00000339570 CCDC7Q96M83 1385 aa21.98■■□□□ 1.11
SCARB1-202ENST00000339570 KIF7Q2M1P5 1343 aa21.98■■□□□ 1.11
SCARB1-202ENST00000339570 FANCIQ9NVI1 1328 aa21.98■■□□□ 1.11
SCARB1-202ENST00000339570 KDM2AQ9Y2K7 1162 aa21.98■■□□□ 1.11
SCARB1-202ENST00000339570 SNAPC4Q5SXM2 1469 aa21.98■■□□□ 1.11
SCARB1-202ENST00000339570 CCDC136Q96JN2 1154 aa21.98■■□□□ 1.11
SCARB1-202ENST00000339570 CNTLNQ9NXG0 1405 aa21.97■■□□□ 1.11
SCARB1-202ENST00000339570 PAK3O75914 559 aaPredicted RBP21.97■■□□□ 1.11
SCARB1-202ENST00000339570 AKNAQ7Z591 1439 aa21.97■■□□□ 1.11
SCARB1-202ENST00000339570 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.96■■□□□ 1.113e-11■■■□□ 17
SCARB1-202ENST00000339570 ABCA10Q8WWZ4 1543 aa21.94■■□□□ 1.1
SCARB1-202ENST00000339570 KDM6BO15054 1643 aa21.94■■□□□ 1.1
SCARB1-202ENST00000339570 EFCAB5A4FU69 1503 aa21.94■■□□□ 1.1
SCARB1-202ENST00000339570 CC2D2AQ9P2K1 1620 aa21.92■■□□□ 1.1
SCARB1-202ENST00000339570 DEKP35659 375 aaKnown RBP21.92■■□□□ 1.1
SCARB1-202ENST00000339570 CDK13Q14004 1512 aaKnown RBP21.91■■□□□ 1.1
SCARB1-202ENST00000339570 KDM5BQ9UGL1 1544 aa21.9■■□□□ 1.1
SCARB1-202ENST00000339570 MAGI3Q5TCQ9 1506 aa21.89■■□□□ 1.1
SCARB1-202ENST00000339570 ZBED9Q6R2W3 1325 aa21.89■■□□□ 1.1
SCARB1-202ENST00000339570 DNMBPQ6XZF7 1577 aa21.88■■□□□ 1.09
SCARB1-202ENST00000339570 GAPVD1Q14C86 1478 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms