RNA–Protein interactions for RNA: ENST00000331758.7

SS18L1-201, Transcript of SS18L1, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SS18L1, Length 4,493 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18L1-201ENST00000331758 ACIN1Q9UKV3 1341 aaKnown RBP13.35□□□□□ -0.27
SS18L1-201ENST00000331758 DDX10Q13206 875 aaKnown RBP13.35□□□□□ -0.27
SS18L1-201ENST00000331758 KCNH8Q96L42 1107 aa13.35□□□□□ -0.27
SS18L1-201ENST00000331758 HIRIP3Q9BW71 556 aaPredicted RBP13.35□□□□□ -0.27
SS18L1-201ENST00000331758 SLC4A1APQ9BWU0 796 aaKnown RBP13.35□□□□□ -0.27
SS18L1-201ENST00000331758 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.33□□□□□ -0.284e-8■□□□□ 11
SS18L1-201ENST00000331758 NPM1P06748 294 aaKnown RBP eCLIP13.32□□□□□ -0.28
SS18L1-201ENST00000331758 CFDP1Q9UEE9 299 aaPredicted RBP13.32□□□□□ -0.28
SS18L1-201ENST00000331758 ERICH6Q7L0X2 663 aa13.31□□□□□ -0.28
SS18L1-201ENST00000331758 FGD5Q6ZNL6 1462 aa13.31□□□□□ -0.28
SS18L1-201ENST00000331758 IGF1RP08069 1367 aa13.3□□□□□ -0.28
SS18L1-201ENST00000331758 SYNJ1O43426 1573 aa13.3□□□□□ -0.28
SS18L1-201ENST00000331758 SIN3AQ96ST3 1273 aa13.29□□□□□ -0.28
SS18L1-201ENST00000331758 FHOD3Q2V2M9 1422 aa13.29□□□□□ -0.28
SS18L1-201ENST00000331758 CFTRP13569 1480 aa13.29□□□□□ -0.28
SS18L1-201ENST00000331758 RAD54L2Q9Y4B4 1467 aa13.29□□□□□ -0.28
SS18L1-201ENST00000331758 MIER1Q8N108 512 aa13.28□□□□□ -0.28
SS18L1-201ENST00000331758 UNC13AQ9UPW8 1703 aa13.27□□□□□ -0.29
SS18L1-201ENST00000331758 NESP48681 1621 aa13.25□□□□□ -0.29
SS18L1-201ENST00000331758 KDM2AQ9Y2K7 1162 aa13.23□□□□□ -0.29
SS18L1-201ENST00000331758 CC2D2AQ9P2K1 1620 aa13.23□□□□□ -0.29
SS18L1-201ENST00000331758 HMGXB3Q12766 1538 aa13.23□□□□□ -0.29
SS18L1-201ENST00000331758 DNAJC5BQ9UF47 199 aa13.23□□□□□ -0.29
SS18L1-201ENST00000331758 FMN1Q68DA7 1419 aa13.22□□□□□ -0.29
SS18L1-201ENST00000331758 BCANQ96GW7 911 aa13.22□□□□□ -0.29
SS18L1-201ENST00000331758 CHGAP10645 457 aaKnown RBP13.2□□□□□ -0.3
SS18L1-201ENST00000331758 ARHGAP35Q9NRY4 1499 aa13.19□□□□□ -0.3
SS18L1-201ENST00000331758 CLSPNQ9HAW4 1339 aa13.18□□□□□ -0.3
SS18L1-201ENST00000331758 CUX1P39880 1505 aa13.17□□□□□ -0.3
SS18L1-201ENST00000331758 GAPVD1Q14C86 1478 aa13.16□□□□□ -0.3
SS18L1-201ENST00000331758 SETD5Q9C0A6 1442 aa13.16□□□□□ -0.3
SS18L1-201ENST00000331758 RAB3GAP2Q9H2M9 1393 aa13.15□□□□□ -0.3
SS18L1-201ENST00000331758 JPH4Q96JJ6 628 aa13.15□□□□□ -0.3
SS18L1-201ENST00000331758 TOP2BQ02880 1626 aa13.14□□□□□ -0.31
SS18L1-201ENST00000331758 EIF4G2P78344 907 aaKnown RBP eCLIP13.14□□□□□ -0.316e-6■■■■□ 25.1
SS18L1-201ENST00000331758 RGL3Q3MIN7 710 aa13.13□□□□□ -0.31
SS18L1-201ENST00000331758 CARMIL2Q6F5E8 1435 aa13.13□□□□□ -0.31
SS18L1-201ENST00000331758 KIF21BO75037 1637 aa13.13□□□□□ -0.31
SS18L1-201ENST00000331758 AQRO60306 1485 aaKnown RBP eCLIP13.12□□□□□ -0.313e-7■■■■□ 25.5
SS18L1-201ENST00000331758 PEG3Q9GZU2 1588 aa13.12□□□□□ -0.31
SS18L1-201ENST00000331758 PRXQ9BXM0 1461 aa13.1□□□□□ -0.31
SS18L1-201ENST00000331758 FAM9BQ8IZU0 186 aa13.1□□□□□ -0.31
SS18L1-201ENST00000331758 HNRNPUQ00839 825 aaKnown RBP eCLIP13.09□□□□□ -0.31
SS18L1-201ENST00000331758 FOXD1Q16676 465 aa13.09□□□□□ -0.31
SS18L1-201ENST00000331758 ARAP1Q96P48 1450 aa13.09□□□□□ -0.31
SS18L1-201ENST00000331758 TOPBP1Q92547 1522 aa13.08□□□□□ -0.32
SS18L1-201ENST00000331758 POLA1P09884 1462 aaPredicted RBP13.07□□□□□ -0.32
SS18L1-201ENST00000331758 ERICH3Q5RHP9 1530 aa13.05□□□□□ -0.32
SS18L1-201ENST00000331758 ESF1Q9H501 851 aaKnown RBP13.05□□□□□ -0.32
SS18L1-201ENST00000331758 STAG3Q9UJ98 1225 aa13.04□□□□□ -0.32
SS18L1-201ENST00000331758 PLPPR3Q6T4P5 718 aa13.03□□□□□ -0.32
SS18L1-201ENST00000331758 SENP3Q9H4L4 574 aaPredicted RBP13.03□□□□□ -0.32
SS18L1-201ENST00000331758 MRS2Q9HD23 443 aa13.02□□□□□ -0.32
SS18L1-201ENST00000331758 DHX57Q6P158 1386 aaKnown RBP13.02□□□□□ -0.33
SS18L1-201ENST00000331758 SALL2Q9Y467 1007 aaPredicted RBP13□□□□□ -0.33
SS18L1-201ENST00000331758 MPHOSPH9Q99550 1183 aa13□□□□□ -0.33
SS18L1-201ENST00000331758 TIMELESSQ9UNS1 1208 aa13□□□□□ -0.33
SS18L1-201ENST00000331758 PHLDB1Q86UU1 1377 aa12.99□□□□□ -0.33
SS18L1-201ENST00000331758 PKD2Q13563 968 aa12.99□□□□□ -0.33
SS18L1-201ENST00000331758 FKBP8Q14318 412 aa12.99□□□□□ -0.33
SS18L1-201ENST00000331758 TMC1Q8TDI8 760 aa12.99□□□□□ -0.33
SS18L1-201ENST00000331758 CARD11Q9BXL7 1154 aa12.99□□□□□ -0.33
SS18L1-201ENST00000331758 HNRNPMP52272 730 aaKnown RBP eCLIP12.98□□□□□ -0.334e-7■■■■■ 29.4
SS18L1-201ENST00000331758 CCDC18Q5T9S5 1454 aa12.97□□□□□ -0.33
SS18L1-201ENST00000331758 DNMBPQ6XZF7 1577 aa12.96□□□□□ -0.34
SS18L1-201ENST00000331758 PPP1R15AO75807 674 aaPredicted RBP12.95□□□□□ -0.34
SS18L1-201ENST00000331758 DCAF11Q8TEB1 546 aa12.95□□□□□ -0.34
SS18L1-201ENST00000331758 GRIN2BQ13224 1484 aa12.95□□□□□ -0.34
SS18L1-201ENST00000331758 LRRC9Q6ZRR7 1453 aa12.95□□□□□ -0.34
SS18L1-201ENST00000331758 MRC2Q9UBG0 1479 aa12.94□□□□□ -0.34
SS18L1-201ENST00000331758 PTPRGP23470 1445 aa12.94□□□□□ -0.34
SS18L1-201ENST00000331758 SENP3-EIF4A1A0A087X0R7 540 aa12.94□□□□□ -0.34
SS18L1-201ENST00000331758 NUP155O75694 1391 aa12.93□□□□□ -0.34
SS18L1-201ENST00000331758 EFCAB2Q5VUJ9 269 aa12.93□□□□□ -0.34
SS18L1-201ENST00000331758 ZNF644Q9H582 1327 aaPredicted RBP12.92□□□□□ -0.34
SS18L1-201ENST00000331758 CASKIN1Q8WXD9 1431 aa12.92□□□□□ -0.34
SS18L1-201ENST00000331758 ANKRD30AQ9BXX3 1397 aa12.92□□□□□ -0.34
SS18L1-201ENST00000331758 HSPA5P11021 654 aaKnown RBP12.91□□□□□ -0.34
SS18L1-201ENST00000331758 L3MBTL2Q969R5 705 aa12.9□□□□□ -0.34
SS18L1-201ENST00000331758 ABCA10Q8WWZ4 1543 aa12.9□□□□□ -0.34
SS18L1-201ENST00000331758 FGD6Q6ZV73 1430 aa12.9□□□□□ -0.34
SS18L1-201ENST00000331758 LAMC3Q9Y6N6 1575 aa12.89□□□□□ -0.35
SS18L1-201ENST00000331758 IRX6P78412 446 aaPredicted RBP12.87□□□□□ -0.35
SS18L1-201ENST00000331758 MYOM3Q5VTT5 1437 aa12.87□□□□□ -0.35
SS18L1-201ENST00000331758 IFT140Q96RY7 1462 aa12.87□□□□□ -0.35
SS18L1-201ENST00000331758 URB2Q14146 1524 aaKnown RBP12.86□□□□□ -0.35
SS18L1-201ENST00000331758 GGT6Q6P531 493 aa12.86□□□□□ -0.35
SS18L1-201ENST00000331758 NCOA2Q15596 1464 aa12.85□□□□□ -0.35
SS18L1-201ENST00000331758 DAXXQ9UER7 740 aaPredicted RBP12.84□□□□□ -0.35
SS18L1-201ENST00000331758 FYCO1Q9BQS8 1478 aa12.84□□□□□ -0.35
SS18L1-201ENST00000331758 RRBP1Q9P2E9 1410 aaKnown RBP12.84□□□□□ -0.35
SS18L1-201ENST00000331758 BIVM-ERCC5R4GMW8 1640 aa12.84□□□□□ -0.35
SS18L1-201ENST00000331758 SNAPC4Q5SXM2 1469 aa12.83□□□□□ -0.36
SS18L1-201ENST00000331758 CANXP27824 592 aaKnown RBP12.82□□□□□ -0.36
SS18L1-201ENST00000331758 NEFMP07197 916 aa12.82□□□□□ -0.36
SS18L1-201ENST00000331758 RSPH4AQ5TD94 716 aa12.82□□□□□ -0.36
SS18L1-201ENST00000331758 PRDM2Q13029 1718 aa12.81□□□□□ -0.36
SS18L1-201ENST00000331758 KIF3BO15066 747 aa12.81□□□□□ -0.36
SS18L1-201ENST00000331758 WDR43Q15061 677 aaKnown RBP eCLIP12.81□□□□□ -0.36
SS18L1-201ENST00000331758 ARID4BQ4LE39 1312 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms