RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 GAPVD1Q14C86 1478 aa20.24■□□□□ 0.83
CPNE1-201ENST00000317677 SCAF1Q9H7N4 1312 aaKnown RBP20.2■□□□□ 0.82
CPNE1-201ENST00000317677 ARHGAP35Q9NRY4 1499 aa20.19■□□□□ 0.82
CPNE1-201ENST00000317677 PBRM1Q86U86 1689 aa20.18■□□□□ 0.82
CPNE1-201ENST00000317677 CHD1O14646 1710 aa20.17■□□□□ 0.82
CPNE1-201ENST00000317677 CTTNBP2Q8WZ74 1663 aa20.13■□□□□ 0.81
CPNE1-201ENST00000317677 FBLN2P98095 1184 aa20.13■□□□□ 0.81
CPNE1-201ENST00000317677 GRIN2BQ13224 1484 aa20.12■□□□□ 0.81
CPNE1-201ENST00000317677 SNAPC4Q5SXM2 1469 aa20.11■□□□□ 0.81
CPNE1-201ENST00000317677 MAGI1Q96QZ7 1491 aaPredicted RBP20.1■□□□□ 0.81
CPNE1-201ENST00000317677 TTBK1Q5TCY1 1321 aaPredicted RBP20.1■□□□□ 0.81
CPNE1-201ENST00000317677 ADAMTS12P58397 1594 aa20.06■□□□□ 0.8
CPNE1-201ENST00000317677 CHMP7Q8WUX9 453 aaPredicted RBP20.05■□□□□ 0.8
CPNE1-201ENST00000317677 RIMBP3CA6NJZ7 1639 aa20.03■□□□□ 0.8
CPNE1-201ENST00000317677 RIMBP3BA6NNM3 1639 aa20.03■□□□□ 0.8
CPNE1-201ENST00000317677 RIMBP3Q9UFD9 1639 aa20.03■□□□□ 0.8
CPNE1-201ENST00000317677 SYNJ2O15056 1496 aa20.02■□□□□ 0.79
CPNE1-201ENST00000317677 ARHGEF11O15085 1522 aa20■□□□□ 0.79
CPNE1-201ENST00000317677 FHAD1B1AJZ9 1412 aa20■□□□□ 0.79
CPNE1-201ENST00000317677 ZEB1P37275 1124 aaPredicted RBP19.97■□□□□ 0.79
CPNE1-201ENST00000317677 EFCAB5A4FU69 1503 aa19.96■□□□□ 0.79
CPNE1-201ENST00000317677 SAMD9Q5K651 1589 aa19.94■□□□□ 0.78
CPNE1-201ENST00000317677 FHOD3Q2V2M9 1422 aa19.93■□□□□ 0.78
CPNE1-201ENST00000317677 PCF11O94913 1555 aaKnown RBP19.91■□□□□ 0.78
CPNE1-201ENST00000317677 CLASP1Q7Z460 1538 aa19.91■□□□□ 0.78
CPNE1-201ENST00000317677 APLP2Q06481 763 aa19.9■□□□□ 0.78
CPNE1-201ENST00000317677 P3H3Q8IVL6 736 aa19.9■□□□□ 0.78
CPNE1-201ENST00000317677 KANK4Q5T7N3 995 aaPredicted RBP19.9■□□□□ 0.78
CPNE1-201ENST00000317677 TIAM1Q13009 1591 aa19.86■□□□□ 0.77
CPNE1-201ENST00000317677 GRIN2AQ12879 1464 aa19.85■□□□□ 0.77
CPNE1-201ENST00000317677 IQGAP2Q13576 1575 aa19.85■□□□□ 0.77
CPNE1-201ENST00000317677 MAP3K1Q13233 1512 aa19.84■□□□□ 0.77
CPNE1-201ENST00000317677 CYB5RLQ6IPT4 315 aa19.83■□□□□ 0.77
CPNE1-201ENST00000317677 CFAP43Q8NDM7 1665 aa19.83■□□□□ 0.76
CPNE1-201ENST00000317677 FYCO1Q9BQS8 1478 aa19.79■□□□□ 0.76
CPNE1-201ENST00000317677 CASKIN1Q8WXD9 1431 aa19.79■□□□□ 0.76
CPNE1-201ENST00000317677 LRRIQ1Q96JM4 1722 aa19.77■□□□□ 0.76
CPNE1-201ENST00000317677 NUP160Q12769 1436 aa19.75■□□□□ 0.75
CPNE1-201ENST00000317677 CEP170Q5SW79 1584 aa19.75■□□□□ 0.75
CPNE1-201ENST00000317677 UGGT2Q9NYU1 1516 aa19.75■□□□□ 0.75
CPNE1-201ENST00000317677 FMN1Q68DA7 1419 aa19.75■□□□□ 0.75
CPNE1-201ENST00000317677 KIAA0586Q9BVV6 1533 aa19.74■□□□□ 0.75
CPNE1-201ENST00000317677 LRRC9Q6ZRR7 1453 aa19.74■□□□□ 0.75
CPNE1-201ENST00000317677 RRBP1Q9P2E9 1410 aaKnown RBP19.69■□□□□ 0.74
CPNE1-201ENST00000317677 DISP1Q96F81 1524 aa19.68■□□□□ 0.74
CPNE1-201ENST00000317677 ACIN1Q9UKV3 1341 aaKnown RBP19.68■□□□□ 0.74
CPNE1-201ENST00000317677 KIAA0556O60303 1618 aa19.67■□□□□ 0.74
CPNE1-201ENST00000317677 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.66■□□□□ 0.74
CPNE1-201ENST00000317677 SHROOM2Q13796 1616 aa19.65■□□□□ 0.74
CPNE1-201ENST00000317677 ATP1B4Q9UN42 357 aaPredicted RBP19.65■□□□□ 0.74
CPNE1-201ENST00000317677 HNRNPUL2Q1KMD3 747 aaKnown RBP19.64■□□□□ 0.74
CPNE1-201ENST00000317677 PHLDB1Q86UU1 1377 aa19.6■□□□□ 0.73
CPNE1-201ENST00000317677 ERCC6L2Q5T890 1561 aa19.59■□□□□ 0.73
CPNE1-201ENST00000317677 CCNB3Q8WWL7 1395 aa19.58■□□□□ 0.73
CPNE1-201ENST00000317677 HECW1Q76N89 1606 aa19.58■□□□□ 0.72
CPNE1-201ENST00000317677 JPH4Q96JJ6 628 aa19.57■□□□□ 0.72
CPNE1-201ENST00000317677 MAGI3Q5TCQ9 1506 aa19.56■□□□□ 0.72
CPNE1-201ENST00000317677 PRG4Q92954 1404 aaPredicted RBP19.56■□□□□ 0.72
CPNE1-201ENST00000317677 TRHP20396 242 aaPredicted RBP19.54■□□□□ 0.72
CPNE1-201ENST00000317677 CCER1Q8TC90 406 aaPredicted RBP19.53■□□□□ 0.72
CPNE1-201ENST00000317677 EPRSP07814 1512 aaKnown RBP19.52■□□□□ 0.72
CPNE1-201ENST00000317677 CDK13Q14004 1512 aaKnown RBP19.52■□□□□ 0.71
CPNE1-201ENST00000317677 CCDC18Q5T9S5 1454 aa19.51■□□□□ 0.71
CPNE1-201ENST00000317677 EHBP1L1Q8N3D4 1523 aa19.5■□□□□ 0.71
CPNE1-201ENST00000317677 RAPGEF6Q8TEU7 1601 aa19.49■□□□□ 0.71
CPNE1-201ENST00000317677 MTUS2Q5JR59 1369 aa19.48■□□□□ 0.71
CPNE1-201ENST00000317677 NEUROD1Q13562 356 aa19.47■□□□□ 0.71
CPNE1-201ENST00000317677 NUP153P49790 1475 aaKnown RBP19.47■□□□□ 0.71
CPNE1-201ENST00000317677 SUPT6HQ7KZ85 1726 aaKnown RBP19.46■□□□□ 0.71
CPNE1-201ENST00000317677 NCOA2Q15596 1464 aa19.46■□□□□ 0.71
CPNE1-201ENST00000317677 PLB1Q6P1J6 1458 aa19.42■□□□□ 0.7
CPNE1-201ENST00000317677 CARMIL2Q6F5E8 1435 aa19.42■□□□□ 0.7
CPNE1-201ENST00000317677 FGD6Q6ZV73 1430 aa19.41■□□□□ 0.7
CPNE1-201ENST00000317677 GTF3C3Q9Y5Q9 886 aa19.41■□□□□ 0.7
CPNE1-201ENST00000317677 ARID3CA6NKF2 412 aa19.4■□□□□ 0.7
CPNE1-201ENST00000317677 CENPBP07199 599 aaPredicted RBP19.4■□□□□ 0.7
CPNE1-201ENST00000317677 ITGAEP38570 1179 aa19.38■□□□□ 0.69
CPNE1-201ENST00000317677 MYOM3Q5VTT5 1437 aa19.37■□□□□ 0.69
CPNE1-201ENST00000317677 ABCA8O94911 1581 aa19.37■□□□□ 0.69
CPNE1-201ENST00000317677 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.37■□□□□ 0.69
CPNE1-201ENST00000317677 FAM50AQ14320 339 aaKnown RBP19.36■□□□□ 0.69
CPNE1-201ENST00000317677 NPM1P06748 294 aaKnown RBP eCLIP19.33■□□□□ 0.69
CPNE1-201ENST00000317677 PTPN23Q9H3S7 1636 aa19.32■□□□□ 0.68
CPNE1-201ENST00000317677 DHX57Q6P158 1386 aaKnown RBP19.31■□□□□ 0.68
CPNE1-201ENST00000317677 PTPRGP23470 1445 aa19.3■□□□□ 0.68
CPNE1-201ENST00000317677 PTPRKQ15262 1439 aa19.29■□□□□ 0.68
CPNE1-201ENST00000317677 ADCY10Q96PN6 1610 aa19.28■□□□□ 0.68
CPNE1-201ENST00000317677 RAB3GAP2Q9H2M9 1393 aa19.28■□□□□ 0.68
CPNE1-201ENST00000317677 TCOF1Q13428 1488 aaKnown RBP19.27■□□□□ 0.68
CPNE1-201ENST00000317677 KIF14Q15058 1648 aa19.25■□□□□ 0.67
CPNE1-201ENST00000317677 TROQ12816 1431 aaPredicted RBP19.25■□□□□ 0.67
CPNE1-201ENST00000317677 SETD5Q9C0A6 1442 aa19.25■□□□□ 0.67
CPNE1-201ENST00000317677 ATP10BO94823 1461 aa19.24■□□□□ 0.67
CPNE1-201ENST00000317677 MAPKBP1O60336 1514 aa19.23■□□□□ 0.67
CPNE1-201ENST00000317677 MIA2Q96PC5 1412 aa19.21■□□□□ 0.67
CPNE1-201ENST00000317677 KIF13AQ9H1H9 1805 aa19.21■□□□□ 0.67
CPNE1-201ENST00000317677 CDK11AQ9UQ88 783 aaPredicted RBP19.17■□□□□ 0.66
CPNE1-201ENST00000317677 UHRF1BP1LA0JNW5 1464 aa19.16■□□□□ 0.66
CPNE1-201ENST00000317677 UACAQ9BZF9 1416 aa19.16■□□□□ 0.66
CPNE1-201ENST00000317677 ABCC10Q5T3U5 1492 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms