RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 CCDC18Q5T9S5 1454 aa5.33□□□□□ -1.56
USH2A-201ENST00000307340 KIF21BO75037 1637 aa5.33□□□□□ -1.56
USH2A-201ENST00000307340 AAMPQ13685 434 aa5.33□□□□□ -1.56
USH2A-201ENST00000307340 BECN1Q14457 450 aa5.33□□□□□ -1.56
USH2A-201ENST00000307340 GOLGA6L22H0YM25 854 aa5.32□□□□□ -1.56
USH2A-201ENST00000307340 MTUS2Q5JR59 1369 aa5.32□□□□□ -1.56
USH2A-201ENST00000307340 TRIM44Q96DX7 344 aaPredicted RBP5.32□□□□□ -1.56
USH2A-201ENST00000307340 PDS5BQ9NTI5 1447 aa5.31□□□□□ -1.56
USH2A-201ENST00000307340 CUL7Q14999 1698 aa5.31□□□□□ -1.56
USH2A-201ENST00000307340 AEBP2Q6ZN18 517 aaPredicted RBP5.31□□□□□ -1.56
USH2A-201ENST00000307340 HDAC5Q9UQL6 1122 aa5.3□□□□□ -1.56
USH2A-201ENST00000307340 TSPY4P0CV99 314 aa5.3□□□□□ -1.56
USH2A-201ENST00000307340 TSPY10P0CW01 314 aa5.3□□□□□ -1.56
USH2A-201ENST00000307340 CHMP4CQ96CF2 233 aa5.3□□□□□ -1.56
USH2A-201ENST00000307340 HMGXB3Q12766 1538 aa5.3□□□□□ -1.56
USH2A-201ENST00000307340 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.3□□□□□ -1.56
USH2A-201ENST00000307340 HNRNPUL2Q1KMD3 747 aaKnown RBP5.3□□□□□ -1.56
USH2A-201ENST00000307340 HDGFP51858 240 aaKnown RBP5.3□□□□□ -1.56
USH2A-201ENST00000307340 CASC1Q6TDU7 716 aa5.3□□□□□ -1.56
USH2A-201ENST00000307340 EFCAB5A4FU69 1503 aa5.29□□□□□ -1.56
USH2A-201ENST00000307340 WDR97A6NE52 1622 aa5.29□□□□□ -1.56
USH2A-201ENST00000307340 EIF3AQ14152 1382 aaKnown RBP5.29□□□□□ -1.56
USH2A-201ENST00000307340 UACAQ9BZF9 1416 aa5.29□□□□□ -1.56
USH2A-201ENST00000307340 VPS8Q8N3P4 1428 aa5.29□□□□□ -1.56
USH2A-201ENST00000307340 WWC1Q8IX03 1113 aa5.29□□□□□ -1.56
USH2A-201ENST00000307340 NRDCO43847 1150 aa5.29□□□□□ -1.56
USH2A-201ENST00000307340 ERCC6Q03468 1493 aa5.28□□□□□ -1.56
USH2A-201ENST00000307340 L1TD1Q5T7N2 865 aaKnown RBP5.28□□□□□ -1.56
USH2A-201ENST00000307340 CARMIL2Q6F5E8 1435 aa5.28□□□□□ -1.56
USH2A-201ENST00000307340 MYH16Q9H6N6 1097 aa5.28□□□□□ -1.56
USH2A-201ENST00000307340 ARHGAP35Q9NRY4 1499 aa5.28□□□□□ -1.56
USH2A-201ENST00000307340 MAP3K1Q13233 1512 aa5.27□□□□□ -1.57
USH2A-201ENST00000307340 HMGB2P26583 209 aaKnown RBP5.27□□□□□ -1.57
USH2A-201ENST00000307340 PLPPR3Q6T4P5 718 aa5.27□□□□□ -1.57
USH2A-201ENST00000307340 PEG3Q9GZU2 1588 aa5.27□□□□□ -1.57
USH2A-201ENST00000307340 TNNT2P45379 298 aaPredicted RBP5.27□□□□□ -1.57
USH2A-201ENST00000307340 SETD5Q9C0A6 1442 aa5.27□□□□□ -1.57
USH2A-201ENST00000307340 CALD1Q05682 793 aaKnown RBP5.26□□□□□ -1.57
USH2A-201ENST00000307340 EIF4G2P78344 907 aaKnown RBP eCLIP5.26□□□□□ -1.57
USH2A-201ENST00000307340 CC2D2AQ9P2K1 1620 aa5.26□□□□□ -1.57
USH2A-201ENST00000307340 CCER2I3L3R5 266 aa5.26□□□□□ -1.57
USH2A-201ENST00000307340 HSP90AA1P07900 732 aaKnown RBP5.26□□□□□ -1.57
USH2A-201ENST00000307340 FAM50AQ14320 339 aaKnown RBP5.26□□□□□ -1.57
USH2A-201ENST00000307340 PDIA4P13667 645 aaKnown RBP5.25□□□□□ -1.57
USH2A-201ENST00000307340 KANK1Q14678 1352 aa5.25□□□□□ -1.57
USH2A-201ENST00000307340 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.25□□□□□ -1.57
USH2A-201ENST00000307340 CCNB3Q8WWL7 1395 aa5.25□□□□□ -1.57
USH2A-201ENST00000307340 NPM1P06748 294 aaKnown RBP eCLIP5.25□□□□□ -1.57
USH2A-201ENST00000307340 THOC2Q8NI27 1593 aaKnown RBP5.25□□□□□ -1.57
USH2A-201ENST00000307340 GOLGA6L6A8MZA4 724 aa5.24□□□□□ -1.57
USH2A-201ENST00000307340 TMC1Q8TDI8 760 aa5.24□□□□□ -1.57
USH2A-201ENST00000307340 SUPT6HQ7KZ85 1726 aaKnown RBP5.24□□□□□ -1.57
USH2A-201ENST00000307340 PPM1GO15355 546 aaPredicted RBP5.24□□□□□ -1.57
USH2A-201ENST00000307340 PKNOX2Q96KN3 472 aa5.24□□□□□ -1.57
USH2A-201ENST00000307340 CANXP27824 592 aaKnown RBP5.24□□□□□ -1.57
USH2A-201ENST00000307340 TRIM52Q96A61 297 aa5.23□□□□□ -1.57
USH2A-201ENST00000307340 ESF1Q9H501 851 aaKnown RBP5.23□□□□□ -1.57
USH2A-201ENST00000307340 A0A0U1RQG5 324 aaPredicted RBP5.23□□□□□ -1.57
USH2A-201ENST00000307340 AKNAQ7Z591 1439 aa5.23□□□□□ -1.57
USH2A-201ENST00000307340 CFAP53Q96M91 514 aa5.23□□□□□ -1.57
USH2A-201ENST00000307340 CCDC34Q96HJ3 373 aa5.22□□□□□ -1.57
USH2A-201ENST00000307340 WASHC2AQ641Q2 1341 aa5.22□□□□□ -1.57
USH2A-201ENST00000307340 WASHC2CQ9Y4E1 1318 aa5.22□□□□□ -1.57
USH2A-201ENST00000307340 DHX8Q14562 1220 aaKnown RBP5.21□□□□□ -1.58
USH2A-201ENST00000307340 PRKCSHP14314 528 aaPredicted RBP5.21□□□□□ -1.58
USH2A-201ENST00000307340 ITSN2Q9NZM3 1697 aa5.21□□□□□ -1.58
USH2A-201ENST00000307340 PDE3BQ13370 1112 aa5.21□□□□□ -1.58
USH2A-201ENST00000307340 LAMC3Q9Y6N6 1575 aa5.21□□□□□ -1.58
USH2A-201ENST00000307340 WDR43Q15061 677 aaKnown RBP eCLIP5.21□□□□□ -1.58
USH2A-201ENST00000307340 PLEKHH2Q8IVE3 1493 aa5.2□□□□□ -1.58
USH2A-201ENST00000307340 TOP2BQ02880 1626 aa5.2□□□□□ -1.58
USH2A-201ENST00000307340 BCL11AQ9H165 835 aa5.2□□□□□ -1.58
USH2A-201ENST00000307340 RALBP1Q15311 655 aa5.19□□□□□ -1.58
USH2A-201ENST00000307340 NUDCQ9Y266 331 aa5.19□□□□□ -1.58
USH2A-201ENST00000307340 ANKRD30AQ9BXX3 1397 aa5.19□□□□□ -1.58
USH2A-201ENST00000307340 FYCO1Q9BQS8 1478 aa5.19□□□□□ -1.58
USH2A-201ENST00000307340 RAPGEF2Q9Y4G8 1499 aa5.19□□□□□ -1.58
USH2A-201ENST00000307340 PLEKHD1A6NEE1 506 aa5.19□□□□□ -1.58
USH2A-201ENST00000307340 GTF3C3Q9Y5Q9 886 aa5.19□□□□□ -1.58
USH2A-201ENST00000307340 CCDC136Q96JN2 1154 aa5.18□□□□□ -1.58
USH2A-201ENST00000307340 CHAF1AQ13111 956 aaPredicted RBP5.18□□□□□ -1.58
USH2A-201ENST00000307340 CTTNBP2Q8WZ74 1663 aa5.18□□□□□ -1.58
USH2A-201ENST00000307340 HTATSF1O43719 755 aaKnown RBP5.18□□□□□ -1.58
USH2A-201ENST00000307340 UNC13AQ9UPW8 1703 aa5.18□□□□□ -1.58
USH2A-201ENST00000307340 PHF14O94880 888 aa5.17□□□□□ -1.58
USH2A-201ENST00000307340 WIZO95785 1651 aa5.17□□□□□ -1.58
USH2A-201ENST00000307340 MIA2Q96PC5 1412 aa5.17□□□□□ -1.58
USH2A-201ENST00000307340 CSPP1Q1MSJ5 1256 aa5.17□□□□□ -1.58
USH2A-201ENST00000307340 CDK11BP21127 795 aaKnown RBP5.17□□□□□ -1.58
USH2A-201ENST00000307340 HECW1Q76N89 1606 aa5.17□□□□□ -1.58
USH2A-201ENST00000307340 ISY1Q9ULR0 285 aaKnown RBP5.17□□□□□ -1.58
USH2A-201ENST00000307340 NINLQ9Y2I6 1382 aa5.17□□□□□ -1.58
USH2A-201ENST00000307340 SYAP1Q96A49 352 aaPredicted RBP5.17□□□□□ -1.58
USH2A-201ENST00000307340 KNSTRNQ9Y448 316 aa5.17□□□□□ -1.58
USH2A-201ENST00000307340 ZRSR1Q15695 479 aaKnown RBP5.16□□□□□ -1.58
USH2A-201ENST00000307340 MTERF4Q7Z6M4 381 aaKnown RBP5.16□□□□□ -1.58
USH2A-201ENST00000307340 CCDC7Q96M83 1385 aa5.16□□□□□ -1.58
USH2A-201ENST00000307340 KAT6BQ8WYB5 2073 aa5.16□□□□□ -1.58
USH2A-201ENST00000307340 KIF3AQ9Y496 699 aa5.16□□□□□ -1.58
USH2A-201ENST00000307340 BIVM-ERCC5R4GMW8 1640 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms