RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 NISCHQ9Y2I1 1504 aa6.95□□□□□ -1.3
USH2A-201ENST00000307340 PELP1Q8IZL8 1130 aaKnown RBP6.55□□□□□ -1.36
USH2A-201ENST00000307340 MYT1Q01538 1121 aa6.47□□□□□ -1.37
USH2A-201ENST00000307340 FAM9AQ8IZU1 332 aaPredicted RBP6.37□□□□□ -1.39
USH2A-201ENST00000307340 CCDC180Q9P1Z9 1646 aa6.33□□□□□ -1.4
USH2A-201ENST00000307340 ZEB1P37275 1124 aaPredicted RBP6.32□□□□□ -1.4
USH2A-201ENST00000307340 CCER1Q8TC90 406 aaPredicted RBP6.2□□□□□ -1.42
USH2A-201ENST00000307340 YTHDC1Q96MU7 727 aaKnown RBP6.15□□□□□ -1.42
USH2A-201ENST00000307340 APLP2Q06481 763 aa6.14□□□□□ -1.43
USH2A-201ENST00000307340 ACIN1Q9UKV3 1341 aaKnown RBP6.11□□□□□ -1.43
USH2A-201ENST00000307340 CENPBP07199 599 aaPredicted RBP6.07□□□□□ -1.44
USH2A-201ENST00000307340 DCAF8L2P0C7V8 631 aa6.07□□□□□ -1.44
USH2A-201ENST00000307340 CLSPNQ9HAW4 1339 aa6.03□□□□□ -1.44
USH2A-201ENST00000307340 TTBK1Q5TCY1 1321 aaPredicted RBP5.99□□□□□ -1.45
USH2A-201ENST00000307340 DCAF1Q9Y4B6 1507 aa5.96□□□□□ -1.46
USH2A-201ENST00000307340 MYO15BQ96JP2 1530 aa5.94□□□□□ -1.46
USH2A-201ENST00000307340 SUPT5HO00267 1087 aaKnown RBP5.88□□□□□ -1.47
USH2A-201ENST00000307340 NACADO15069 1562 aa5.86□□□□□ -1.47
USH2A-201ENST00000307340 TRIM26Q12899 539 aaPredicted RBP5.85□□□□□ -1.47
USH2A-201ENST00000307340 MYT1LQ9UL68 1186 aa5.85□□□□□ -1.47
USH2A-201ENST00000307340 TRIM41Q8WV44 630 aa5.83□□□□□ -1.48
USH2A-201ENST00000307340 NEFLP07196 543 aa5.83□□□□□ -1.48
USH2A-201ENST00000307340 ZCCHC6Q5VYS8 1495 aaKnown RBP5.83□□□□□ -1.48
USH2A-201ENST00000307340 EEA1Q15075 1411 aa5.81□□□□□ -1.48
USH2A-201ENST00000307340 RB1CC1Q8TDY2 1594 aa5.79□□□□□ -1.48
USH2A-201ENST00000307340 ERICH6Q7L0X2 663 aa5.76□□□□□ -1.49
USH2A-201ENST00000307340 EIF5BO60841 1220 aaKnown RBP5.75□□□□□ -1.49
USH2A-201ENST00000307340 SHROOM4Q9ULL8 1493 aa5.74□□□□□ -1.49
USH2A-201ENST00000307340 SLC24A1O60721 1099 aa5.74□□□□□ -1.49
USH2A-201ENST00000307340 NEFMP07197 916 aa5.7□□□□□ -1.5
USH2A-201ENST00000307340 RANGAP1P46060 587 aaPredicted RBP5.7□□□□□ -1.5
USH2A-201ENST00000307340 DAXXQ9UER7 740 aaPredicted RBP5.69□□□□□ -1.5
USH2A-201ENST00000307340 BAZ1AQ9NRL2 1556 aaPredicted RBP5.66□□□□□ -1.5
USH2A-201ENST00000307340 UBTFP17480 764 aaKnown RBP5.65□□□□□ -1.51
USH2A-201ENST00000307340 BAZ1BQ9UIG0 1483 aaKnown RBP5.65□□□□□ -1.51
USH2A-201ENST00000307340 ARID4BQ4LE39 1312 aaPredicted RBP5.64□□□□□ -1.51
USH2A-201ENST00000307340 HRCP23327 699 aa5.63□□□□□ -1.51
USH2A-201ENST00000307340 PCGF6Q9BYE7 350 aa5.62□□□□□ -1.51
USH2A-201ENST00000307340 ANP32EQ9BTT0 268 aa5.61□□□□□ -1.51
USH2A-201ENST00000307340 CDK11AQ9UQ88 783 aaPredicted RBP5.61□□□□□ -1.51
USH2A-201ENST00000307340 SCAF1Q9H7N4 1312 aaKnown RBP5.6□□□□□ -1.51
USH2A-201ENST00000307340 TIMELESSQ9UNS1 1208 aa5.59□□□□□ -1.51
USH2A-201ENST00000307340 SMARCA2P51531 1590 aa5.59□□□□□ -1.51
USH2A-201ENST00000307340 ABCC9O60706 1549 aa5.57□□□□□ -1.52
USH2A-201ENST00000307340 CEP162Q5TB80 1403 aa5.57□□□□□ -1.52
USH2A-201ENST00000307340 NEUROD1Q13562 356 aa5.57□□□□□ -1.52
USH2A-201ENST00000307340 RTL5Q5HYW3 569 aaPredicted RBP5.55□□□□□ -1.52
USH2A-201ENST00000307340 EHMT2Q96KQ7 1210 aa5.55□□□□□ -1.52
USH2A-201ENST00000307340 FHAD1B1AJZ9 1412 aa5.55□□□□□ -1.52
USH2A-201ENST00000307340 RSF1Q96T23 1441 aaPredicted RBP5.54□□□□□ -1.52
USH2A-201ENST00000307340 ABCC8Q09428 1581 aa5.53□□□□□ -1.52
USH2A-201ENST00000307340 CFAP44Q96MT7 982 aa5.53□□□□□ -1.52
USH2A-201ENST00000307340 GLIPR1L2Q4G1C9 344 aa5.52□□□□□ -1.53
USH2A-201ENST00000307340 CEP164Q9UPV0 1460 aa5.51□□□□□ -1.53
USH2A-201ENST00000307340 GOLGA3Q08378 1498 aa5.5□□□□□ -1.53
USH2A-201ENST00000307340 CHIC1Q5VXU3 224 aa5.5□□□□□ -1.53
USH2A-201ENST00000307340 ANP32BQ92688 251 aaKnown RBP5.5□□□□□ -1.53
USH2A-201ENST00000307340 CHMP4BQ9H444 224 aaKnown RBP5.49□□□□□ -1.53
USH2A-201ENST00000307340 SCRIBQ14160 1630 aa5.49□□□□□ -1.53
USH2A-201ENST00000307340 ERICH6BQ5W0A0 696 aa5.49□□□□□ -1.53
USH2A-201ENST00000307340 ANP32CO43423 234 aa5.49□□□□□ -1.53
USH2A-201ENST00000307340 DIEXFQ68CQ4 756 aaKnown RBP5.48□□□□□ -1.53
USH2A-201ENST00000307340 ANO8Q9HCE9 1232 aaPredicted RBP5.48□□□□□ -1.53
USH2A-201ENST00000307340 ZNF316A6NFI3 1004 aaPredicted RBP5.48□□□□□ -1.53
USH2A-201ENST00000307340 UPF2Q9HAU5 1272 aaKnown RBP5.46□□□□□ -1.53
USH2A-201ENST00000307340 CDCA8Q53HL2 280 aa5.46□□□□□ -1.53
USH2A-201ENST00000307340 ZBTB47Q9UFB7 747 aaPredicted RBP5.46□□□□□ -1.54
USH2A-201ENST00000307340 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.45□□□□□ -1.54
USH2A-201ENST00000307340 HAP1P54257 671 aaPredicted RBP5.45□□□□□ -1.54
USH2A-201ENST00000307340 KIF27Q86VH2 1401 aa5.44□□□□□ -1.54
USH2A-201ENST00000307340 CHMP4AQ9BY43 222 aa5.44□□□□□ -1.54
USH2A-201ENST00000307340 ANP32AP39687 249 aaKnown RBP5.43□□□□□ -1.54
USH2A-201ENST00000307340 CSRNP3Q8WYN3 585 aa5.41□□□□□ -1.54
USH2A-201ENST00000307340 TNIKQ9UKE5 1360 aa5.4□□□□□ -1.54
USH2A-201ENST00000307340 STAC3Q96MF2 364 aa5.4□□□□□ -1.54
USH2A-201ENST00000307340 PRDM2Q13029 1718 aa5.4□□□□□ -1.54
USH2A-201ENST00000307340 TOP2AP11388 1531 aaKnown RBP5.4□□□□□ -1.55
USH2A-201ENST00000307340 FMN1Q68DA7 1419 aa5.4□□□□□ -1.55
USH2A-201ENST00000307340 WRNQ14191 1432 aaPredicted RBP eCLIP5.39□□□□□ -1.55
USH2A-201ENST00000307340 MS4A1P11836 297 aa5.39□□□□□ -1.55
USH2A-201ENST00000307340 PNNQ9H307 717 aaKnown RBP5.38□□□□□ -1.55
USH2A-201ENST00000307340 CLIP1P30622 1438 aa5.38□□□□□ -1.55
USH2A-201ENST00000307340 PTMSP20962 102 aa5.38□□□□□ -1.55
USH2A-201ENST00000307340 NGEFQ8N5V2 710 aa5.38□□□□□ -1.55
USH2A-201ENST00000307340 PHLDB1Q86UU1 1377 aa5.38□□□□□ -1.55
USH2A-201ENST00000307340 TONSLQ96HA7 1378 aa5.37□□□□□ -1.55
USH2A-201ENST00000307340 RSPH4AQ5TD94 716 aa5.37□□□□□ -1.55
USH2A-201ENST00000307340 SMARCA4P51532 1647 aa5.36□□□□□ -1.55
USH2A-201ENST00000307340 IL27Q8NEV9 243 aa5.36□□□□□ -1.55
USH2A-201ENST00000307340 ATP1B4Q9UN42 357 aaPredicted RBP5.36□□□□□ -1.55
USH2A-201ENST00000307340 KIF21AQ7Z4S6 1674 aa5.36□□□□□ -1.55
USH2A-201ENST00000307340 DDRGK1Q96HY6 314 aa5.35□□□□□ -1.55
USH2A-201ENST00000307340 SCAPERQ9BY12 1400 aa5.35□□□□□ -1.55
USH2A-201ENST00000307340 NCLP19338 710 aaKnown RBP5.35□□□□□ -1.55
USH2A-201ENST00000307340 CUX1P39880 1505 aa5.35□□□□□ -1.55
USH2A-201ENST00000307340 ERICH3Q5RHP9 1530 aa5.35□□□□□ -1.55
USH2A-201ENST00000307340 POLR3GLQ9BT43 218 aa5.35□□□□□ -1.55
USH2A-201ENST00000307340 USP35Q9P2H5 1018 aa5.34□□□□□ -1.55
USH2A-201ENST00000307340 ROCK2O75116 1388 aaKnown RBP5.34□□□□□ -1.55
USH2A-201ENST00000307340 KTN1Q86UP2 1357 aaKnown RBP5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms