RNA–Protein interactions for RNA: ENST00000295911.6

CLRN1-201, Transcript of clarin 1, humanhuman

TSL 1 (best) BASIC

Gene CLRN1, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1-201ENST00000295911 CEP162Q5TB80 1403 aa14.51□□□□□ -0.09
CLRN1-201ENST00000295911 UBTFP17480 764 aaKnown RBP14.49□□□□□ -0.09
CLRN1-201ENST00000295911 ERICH3Q5RHP9 1530 aa14.43□□□□□ -0.1
CLRN1-201ENST00000295911 KIF27Q86VH2 1401 aa14.42□□□□□ -0.1
CLRN1-201ENST00000295911 ATXN8OSP0DMR3 200 aa14.4□□□□□ -0.1
CLRN1-201ENST00000295911 RAPGEF2Q9Y4G8 1499 aa14.38□□□□□ -0.11
CLRN1-201ENST00000295911 LAMC3Q9Y6N6 1575 aa14.38□□□□□ -0.11
CLRN1-201ENST00000295911 PRXQ9BXM0 1461 aa14.37□□□□□ -0.11
CLRN1-201ENST00000295911 FANCD2Q9BXW9 1451 aa14.37□□□□□ -0.11
CLRN1-201ENST00000295911 CLIP1P30622 1438 aa14.34□□□□□ -0.11
CLRN1-201ENST00000295911 DNMBPQ6XZF7 1577 aa14.33□□□□□ -0.12
CLRN1-201ENST00000295911 FGD5Q6ZNL6 1462 aa14.31□□□□□ -0.12
CLRN1-201ENST00000295911 ZEB1P37275 1124 aaPredicted RBP14.31□□□□□ -0.12
CLRN1-201ENST00000295911 RBM42Q9BTD8 480 aaKnown RBP14.3□□□□□ -0.12
CLRN1-201ENST00000295911 CUX2O14529 1486 aa14.28□□□□□ -0.12
CLRN1-201ENST00000295911 VPS8Q8N3P4 1428 aa14.27□□□□□ -0.13
CLRN1-201ENST00000295911 NESP48681 1621 aa14.26□□□□□ -0.13
CLRN1-201ENST00000295911 PPARGC1BQ86YN6 1023 aaKnown RBP14.25□□□□□ -0.13
CLRN1-201ENST00000295911 TOPBP1Q92547 1522 aa14.25□□□□□ -0.13
CLRN1-201ENST00000295911 ZBTB12Q9Y330 459 aaPredicted RBP14.24□□□□□ -0.13
CLRN1-201ENST00000295911 PDS5BQ9NTI5 1447 aa14.23□□□□□ -0.13
CLRN1-201ENST00000295911 IGF1RP08069 1367 aa14.22□□□□□ -0.13
CLRN1-201ENST00000295911 ABCA10Q8WWZ4 1543 aa14.21□□□□□ -0.13
CLRN1-201ENST00000295911 POLA1P09884 1462 aaPredicted RBP14.18□□□□□ -0.14
CLRN1-201ENST00000295911 WDR97A6NE52 1622 aa14.17□□□□□ -0.14
CLRN1-201ENST00000295911 CUL7Q14999 1698 aa14.17□□□□□ -0.14
CLRN1-201ENST00000295911 KIF21AQ7Z4S6 1674 aa14.17□□□□□ -0.14
CLRN1-201ENST00000295911 CARMIL1Q5VZK9 1371 aa14.17□□□□□ -0.14
CLRN1-201ENST00000295911 POTEHQ6S545 545 aa14.15□□□□□ -0.14
CLRN1-201ENST00000295911 URB2Q14146 1524 aaKnown RBP14.15□□□□□ -0.14
CLRN1-201ENST00000295911 ARAP1Q96P48 1450 aa14.15□□□□□ -0.14
CLRN1-201ENST00000295911 OSCARQ8IYS5 282 aa14.14□□□□□ -0.15
CLRN1-201ENST00000295911 RAD54L2Q9Y4B4 1467 aa14.13□□□□□ -0.15
CLRN1-201ENST00000295911 RANGAP1P46060 587 aaPredicted RBP14.1□□□□□ -0.15
CLRN1-201ENST00000295911 ARHGAP35Q9NRY4 1499 aa14.08□□□□□ -0.15
CLRN1-201ENST00000295911 CTTNBP2Q8WZ74 1663 aa14.08□□□□□ -0.16
CLRN1-201ENST00000295911 ABCA5Q8WWZ7 1642 aa14.08□□□□□ -0.16
CLRN1-201ENST00000295911 TTBK1Q5TCY1 1321 aaPredicted RBP14.07□□□□□ -0.16
CLRN1-201ENST00000295911 TARBP1Q13395 1621 aaKnown RBP14.03□□□□□ -0.16
CLRN1-201ENST00000295911 AKT1S1Q96B36 256 aa14.03□□□□□ -0.16
CLRN1-201ENST00000295911 GAPVD1Q14C86 1478 aa14.02□□□□□ -0.16
CLRN1-201ENST00000295911 MAP3K1Q13233 1512 aa14.02□□□□□ -0.17
CLRN1-201ENST00000295911 MRC2Q9UBG0 1479 aa14.01□□□□□ -0.17
CLRN1-201ENST00000295911 CCER1Q8TC90 406 aaPredicted RBP14.01□□□□□ -0.17
CLRN1-201ENST00000295911 EFCAB5A4FU69 1503 aa14.01□□□□□ -0.17
CLRN1-201ENST00000295911 FBLN2P98095 1184 aa13.99□□□□□ -0.17
CLRN1-201ENST00000295911 MKRN4PQ13434 485 aaPredicted RBP13.99□□□□□ -0.17
CLRN1-201ENST00000295911 FHAD1B1AJZ9 1412 aa13.99□□□□□ -0.17
CLRN1-201ENST00000295911 PBRM1Q86U86 1689 aa13.98□□□□□ -0.17
CLRN1-201ENST00000295911 CHRDL2Q6WN34 429 aa13.97□□□□□ -0.17
CLRN1-201ENST00000295911 TDRD9Q8NDG6 1382 aaKnown RBP13.96□□□□□ -0.17
CLRN1-201ENST00000295911 REM2Q8IYK8 340 aaPredicted RBP13.94□□□□□ -0.18
CLRN1-201ENST00000295911 TIAM1Q13009 1591 aa13.94□□□□□ -0.18
CLRN1-201ENST00000295911 WDR62O43379 1518 aa13.93□□□□□ -0.18
CLRN1-201ENST00000295911 CFAP43Q8NDM7 1665 aa13.92□□□□□ -0.18
CLRN1-201ENST00000295911 AQRO60306 1485 aaKnown RBP eCLIP13.91□□□□□ -0.18
CLRN1-201ENST00000295911 KANK4Q5T7N3 995 aaPredicted RBP13.91□□□□□ -0.18
CLRN1-201ENST00000295911 IFT140Q96RY7 1462 aa13.91□□□□□ -0.18
CLRN1-201ENST00000295911 RRBP1Q9P2E9 1410 aaKnown RBP13.9□□□□□ -0.18
CLRN1-201ENST00000295911 FYCO1Q9BQS8 1478 aa13.89□□□□□ -0.19
CLRN1-201ENST00000295911 SAMD9Q5K651 1589 aa13.89□□□□□ -0.19
CLRN1-201ENST00000295911 PCF11O94913 1555 aaKnown RBP13.88□□□□□ -0.19
CLRN1-201ENST00000295911 FMN1Q68DA7 1419 aa13.87□□□□□ -0.19
CLRN1-201ENST00000295911 GRIN2BQ13224 1484 aa13.87□□□□□ -0.19
CLRN1-201ENST00000295911 CASKIN1Q8WXD9 1431 aa13.87□□□□□ -0.19
CLRN1-201ENST00000295911 ADAMTS12P58397 1594 aa13.86□□□□□ -0.19
CLRN1-201ENST00000295911 SPDYE2BA6NHP3 402 aa13.86□□□□□ -0.19
CLRN1-201ENST00000295911 SPDYE6P0CI01 402 aa13.86□□□□□ -0.19
CLRN1-201ENST00000295911 SPDYE2Q495Y8 402 aa13.86□□□□□ -0.19
CLRN1-201ENST00000295911 LRRC9Q6ZRR7 1453 aa13.85□□□□□ -0.19
CLRN1-201ENST00000295911 FHOD3Q2V2M9 1422 aa13.84□□□□□ -0.19
CLRN1-201ENST00000295911 ERCC6Q03468 1493 aa13.84□□□□□ -0.19
CLRN1-201ENST00000295911 P3H3Q8IVL6 736 aa13.82□□□□□ -0.2
CLRN1-201ENST00000295911 CCNB3Q8WWL7 1395 aa13.82□□□□□ -0.2
CLRN1-201ENST00000295911 THOC2Q8NI27 1593 aaKnown RBP13.81□□□□□ -0.2
CLRN1-201ENST00000295911 IQGAP2Q13576 1575 aa13.81□□□□□ -0.2
CLRN1-201ENST00000295911 PITPNM1O00562 1244 aa13.78□□□□□ -0.2
CLRN1-201ENST00000295911 CLSPNQ9HAW4 1339 aa13.78□□□□□ -0.2
CLRN1-201ENST00000295911 SNAPC4Q5SXM2 1469 aa13.77□□□□□ -0.2
CLRN1-201ENST00000295911 EIF4G3O43432 1585 aaKnown RBP13.77□□□□□ -0.21
CLRN1-201ENST00000295911 ZNF608Q9ULD9 1512 aaPredicted RBP13.76□□□□□ -0.21
CLRN1-201ENST00000295911 ATP1B4Q9UN42 357 aaPredicted RBP13.75□□□□□ -0.21
CLRN1-201ENST00000295911 LRRIQ1Q96JM4 1722 aa13.75□□□□□ -0.21
CLRN1-201ENST00000295911 ZNF692Q9BU19 519 aaPredicted RBP13.74□□□□□ -0.21
CLRN1-201ENST00000295911 UGGT2Q9NYU1 1516 aa13.73□□□□□ -0.21
CLRN1-201ENST00000295911 MAGI1Q96QZ7 1491 aaPredicted RBP13.73□□□□□ -0.21
CLRN1-201ENST00000295911 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.72□□□□□ -0.21
CLRN1-201ENST00000295911 CCDC18Q5T9S5 1454 aa13.71□□□□□ -0.21
CLRN1-201ENST00000295911 KIAA0586Q9BVV6 1533 aa13.71□□□□□ -0.21
CLRN1-201ENST00000295911 HECW1Q76N89 1606 aa13.71□□□□□ -0.21
CLRN1-201ENST00000295911 SSUH2Q9Y2M2 353 aa13.71□□□□□ -0.22
CLRN1-201ENST00000295911 PHLDB1Q86UU1 1377 aa13.71□□□□□ -0.22
CLRN1-201ENST00000295911 SUPT6HQ7KZ85 1726 aaKnown RBP13.7□□□□□ -0.22
CLRN1-201ENST00000295911 GRIN2AQ12879 1464 aa13.69□□□□□ -0.22
CLRN1-201ENST00000295911 PIP4P2Q8N4L2 257 aa13.69□□□□□ -0.22
CLRN1-201ENST00000295911 MTUS2Q5JR59 1369 aa13.68□□□□□ -0.22
CLRN1-201ENST00000295911 EHBP1L1Q8N3D4 1523 aa13.67□□□□□ -0.22
CLRN1-201ENST00000295911 DHX57Q6P158 1386 aaKnown RBP13.66□□□□□ -0.22
CLRN1-201ENST00000295911 SYNJ2O15056 1496 aa13.66□□□□□ -0.22
CLRN1-201ENST00000295911 KIAA0556O60303 1618 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms