RNA–Protein interactions for RNA: ENST00000291547.9

PKNOX1-201, Transcript of PBX/knotted 1 homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PKNOX1, Length 5,003 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-201ENST00000291547 CC2D2AQ9P2K1 1620 aa14.52□□□□□ -0.09
PKNOX1-201ENST00000291547 HMGXB3Q12766 1538 aa14.48□□□□□ -0.09
PKNOX1-201ENST00000291547 CCDC136Q96JN2 1154 aa14.47□□□□□ -0.09
PKNOX1-201ENST00000291547 GOLGA3Q08378 1498 aa14.47□□□□□ -0.09
PKNOX1-201ENST00000291547 SOGA1O94964 1423 aa14.45□□□□□ -0.1
PKNOX1-201ENST00000291547 FAM9BQ8IZU0 186 aa14.45□□□□□ -0.1
PKNOX1-201ENST00000291547 CHMP7Q8WUX9 453 aaPredicted RBP14.44□□□□□ -0.1
PKNOX1-201ENST00000291547 CUX2O14529 1486 aa14.43□□□□□ -0.1
PKNOX1-201ENST00000291547 CEP164Q9UPV0 1460 aa14.43□□□□□ -0.1
PKNOX1-201ENST00000291547 SALL2Q9Y467 1007 aaPredicted RBP14.42□□□□□ -0.1
PKNOX1-201ENST00000291547 FANCD2Q9BXW9 1451 aa14.42□□□□□ -0.1
PKNOX1-201ENST00000291547 DDX10Q13206 875 aaKnown RBP14.41□□□□□ -0.1
PKNOX1-201ENST00000291547 ERICH6BQ5W0A0 696 aa14.4□□□□□ -0.1
PKNOX1-201ENST00000291547 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.39□□□□□ -0.11
PKNOX1-201ENST00000291547 CLIP1P30622 1438 aa14.38□□□□□ -0.11
PKNOX1-201ENST00000291547 PEG3Q9GZU2 1588 aa14.36□□□□□ -0.11
PKNOX1-201ENST00000291547 TNIKQ9UKE5 1360 aa14.36□□□□□ -0.11
PKNOX1-201ENST00000291547 CEP162Q5TB80 1403 aa14.34□□□□□ -0.11
PKNOX1-201ENST00000291547 ARID3CA6NKF2 412 aa14.34□□□□□ -0.11
PKNOX1-201ENST00000291547 CFTRP13569 1480 aa14.33□□□□□ -0.11
PKNOX1-201ENST00000291547 CARMIL1Q5VZK9 1371 aa14.33□□□□□ -0.12
PKNOX1-201ENST00000291547 TONSLQ96HA7 1378 aa14.32□□□□□ -0.12
PKNOX1-201ENST00000291547 TMC1Q8TDI8 760 aa14.31□□□□□ -0.12
PKNOX1-201ENST00000291547 TRIM44Q96DX7 344 aaPredicted RBP14.31□□□□□ -0.12
PKNOX1-201ENST00000291547 IRX6P78412 446 aaPredicted RBP14.31□□□□□ -0.12
PKNOX1-201ENST00000291547 TDRD9Q8NDG6 1382 aaKnown RBP14.29□□□□□ -0.12
PKNOX1-201ENST00000291547 TNNT2P45379 298 aaPredicted RBP14.29□□□□□ -0.12
PKNOX1-201ENST00000291547 SUPT16HQ9Y5B9 1047 aaKnown RBP14.29□□□□□ -0.12
PKNOX1-201ENST00000291547 ZNF777Q9ULD5 760 aaPredicted RBP14.28□□□□□ -0.12
PKNOX1-201ENST00000291547 MRS2Q9HD23 443 aa14.25□□□□□ -0.13
PKNOX1-201ENST00000291547 NESP48681 1621 aa14.25□□□□□ -0.13
PKNOX1-201ENST00000291547 CDK11BP21127 795 aaKnown RBP14.24□□□□□ -0.13
PKNOX1-201ENST00000291547 TSHZ2Q9NRE2 1034 aa14.23□□□□□ -0.13
PKNOX1-201ENST00000291547 DNAJC5BQ9UF47 199 aa14.23□□□□□ -0.13
PKNOX1-201ENST00000291547 FGD5Q6ZNL6 1462 aa14.22□□□□□ -0.13
PKNOX1-201ENST00000291547 BECN1Q14457 450 aa14.21□□□□□ -0.13
PKNOX1-201ENST00000291547 DDRGK1Q96HY6 314 aa14.21□□□□□ -0.13
PKNOX1-201ENST00000291547 WDR43Q15061 677 aaKnown RBP eCLIP14.21□□□□□ -0.14
PKNOX1-201ENST00000291547 MIER1Q8N108 512 aa14.21□□□□□ -0.14
PKNOX1-201ENST00000291547 CHGAP10645 457 aaKnown RBP14.2□□□□□ -0.14
PKNOX1-201ENST00000291547 DEKP35659 375 aaKnown RBP14.2□□□□□ -0.14
PKNOX1-201ENST00000291547 RUSC2Q8N2Y8 1516 aa14.19□□□□□ -0.14
PKNOX1-201ENST00000291547 NCLP19338 710 aaKnown RBP14.19□□□□□ -0.14
PKNOX1-201ENST00000291547 GOLGA6L22H0YM25 854 aa14.18□□□□□ -0.14
PKNOX1-201ENST00000291547 PTMAP06454 111 aaKnown RBP14.16□□□□□ -0.14
PKNOX1-201ENST00000291547 RTN4Q9NQC3 1192 aaKnown RBP14.16□□□□□ -0.14
PKNOX1-201ENST00000291547 MYH16Q9H6N6 1097 aa14.16□□□□□ -0.14
PKNOX1-201ENST00000291547 SYNJ1O43426 1573 aa14.15□□□□□ -0.14
PKNOX1-201ENST00000291547 RAPGEF2Q9Y4G8 1499 aa14.15□□□□□ -0.14
PKNOX1-201ENST00000291547 DNTTIP2Q5QJE6 756 aaKnown RBP14.15□□□□□ -0.14
PKNOX1-201ENST00000291547 NAP1L5Q96NT1 182 aaPredicted RBP14.14□□□□□ -0.15
PKNOX1-201ENST00000291547 RAD54L2Q9Y4B4 1467 aa14.14□□□□□ -0.15
PKNOX1-201ENST00000291547 MTUS2Q5JR59 1369 aa14.14□□□□□ -0.15
PKNOX1-201ENST00000291547 NPM1P06748 294 aaKnown RBP eCLIP14.13□□□□□ -0.15
PKNOX1-201ENST00000291547 LAMC3Q9Y6N6 1575 aa14.13□□□□□ -0.15
PKNOX1-201ENST00000291547 STAG3Q9UJ98 1225 aa14.12□□□□□ -0.15
PKNOX1-201ENST00000291547 PPM1GO15355 546 aaPredicted RBP14.11□□□□□ -0.15
PKNOX1-201ENST00000291547 RBM19Q9Y4C8 960 aaKnown RBP14.1□□□□□ -0.15
PKNOX1-201ENST00000291547 TOP2BQ02880 1626 aa14.1□□□□□ -0.15
PKNOX1-201ENST00000291547 MRC2Q9UBG0 1479 aa14.1□□□□□ -0.15
PKNOX1-201ENST00000291547 CUX1P39880 1505 aa14.1□□□□□ -0.15
PKNOX1-201ENST00000291547 ESF1Q9H501 851 aaKnown RBP14.09□□□□□ -0.15
PKNOX1-201ENST00000291547 HIRIP3Q9BW71 556 aaPredicted RBP14.08□□□□□ -0.15
PKNOX1-201ENST00000291547 TOPBP1Q92547 1522 aa14.08□□□□□ -0.15
PKNOX1-201ENST00000291547 GAPVD1Q14C86 1478 aa14.08□□□□□ -0.15
PKNOX1-201ENST00000291547 FHAD1B1AJZ9 1412 aa14.08□□□□□ -0.16
PKNOX1-201ENST00000291547 IGF1RP08069 1367 aa14.07□□□□□ -0.16
PKNOX1-201ENST00000291547 ZRSR1Q15695 479 aaKnown RBP14.06□□□□□ -0.16
PKNOX1-201ENST00000291547 LAS1LQ9Y4W2 734 aaKnown RBP14.05□□□□□ -0.16
PKNOX1-201ENST00000291547 DNMBPQ6XZF7 1577 aa14.05□□□□□ -0.16
PKNOX1-201ENST00000291547 CHIC2Q9UKJ5 165 aa14.04□□□□□ -0.16
PKNOX1-201ENST00000291547 KDM2AQ9Y2K7 1162 aa14.04□□□□□ -0.16
PKNOX1-201ENST00000291547 VPS8Q8N3P4 1428 aa14.04□□□□□ -0.16
PKNOX1-201ENST00000291547 TPRNQ4KMQ1 711 aa14.03□□□□□ -0.16
PKNOX1-201ENST00000291547 POLA1P09884 1462 aaPredicted RBP14.02□□□□□ -0.16
PKNOX1-201ENST00000291547 PLEKHD1A6NEE1 506 aa14.02□□□□□ -0.17
PKNOX1-201ENST00000291547 NOP58Q9Y2X3 529 aaKnown RBP14.01□□□□□ -0.17
PKNOX1-201ENST00000291547 AQRO60306 1485 aaKnown RBP eCLIP14□□□□□ -0.17
PKNOX1-201ENST00000291547 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14□□□□□ -0.17
PKNOX1-201ENST00000291547 CARMIL2Q6F5E8 1435 aa14□□□□□ -0.17
PKNOX1-201ENST00000291547 PLCB2Q00722 1185 aa13.99□□□□□ -0.17
PKNOX1-201ENST00000291547 EIF4G2P78344 907 aaKnown RBP eCLIP13.99□□□□□ -0.17
PKNOX1-201ENST00000291547 SENP3-EIF4A1A0A087X0R7 540 aa13.98□□□□□ -0.17
PKNOX1-201ENST00000291547 IFT140Q96RY7 1462 aa13.97□□□□□ -0.17
PKNOX1-201ENST00000291547 PLPPR3Q6T4P5 718 aa13.96□□□□□ -0.17
PKNOX1-201ENST00000291547 FMN1Q68DA7 1419 aa13.96□□□□□ -0.17
PKNOX1-201ENST00000291547 GRIN2BQ13224 1484 aa13.95□□□□□ -0.18
PKNOX1-201ENST00000291547 KCNH8Q96L42 1107 aa13.95□□□□□ -0.18
PKNOX1-201ENST00000291547 FANCIQ9NVI1 1328 aa13.94□□□□□ -0.18
PKNOX1-201ENST00000291547 UBE2Q2Q8WVN8 375 aa13.93□□□□□ -0.18
PKNOX1-201ENST00000291547 FHOD3Q2V2M9 1422 aa13.93□□□□□ -0.18
PKNOX1-201ENST00000291547 PKNOX2Q96KN3 472 aa13.93□□□□□ -0.18
PKNOX1-201ENST00000291547 KIF21BO75037 1637 aa13.93□□□□□ -0.18
PKNOX1-201ENST00000291547 RGS3P49796 1198 aa13.93□□□□□ -0.18
PKNOX1-201ENST00000291547 JPH4Q96JJ6 628 aa13.92□□□□□ -0.18
PKNOX1-201ENST00000291547 CASC1Q6TDU7 716 aa13.92□□□□□ -0.18
PKNOX1-201ENST00000291547 PPP4R2Q9NY27 417 aa13.92□□□□□ -0.18
PKNOX1-201ENST00000291547 AMER1Q5JTC6 1135 aaPredicted RBP13.91□□□□□ -0.18
PKNOX1-201ENST00000291547 ERICH3Q5RHP9 1530 aa13.91□□□□□ -0.18
PKNOX1-201ENST00000291547 A0A0G2JS52 829 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms