RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 FANCD2Q9BXW9 1451 aa24.22■■□□□ 1.47
VPS54-201ENST00000272322 FHOD3Q2V2M9 1422 aa24.19■■□□□ 1.46
VPS54-201ENST00000272322 RAB3GAP2Q9H2M9 1393 aa24.15■■□□□ 1.46
VPS54-201ENST00000272322 PHLDB1Q86UU1 1377 aa24.13■■□□□ 1.45
VPS54-201ENST00000272322 KCNH8Q96L42 1107 aa24.08■■□□□ 1.45
VPS54-201ENST00000272322 RRBP1Q9P2E9 1410 aaKnown RBP24.05■■□□□ 1.44
VPS54-201ENST00000272322 DDX10Q13206 875 aaKnown RBP24.03■■□□□ 1.44
VPS54-201ENST00000272322 CHIC2Q9UKJ5 165 aa24.03■■□□□ 1.44
VPS54-201ENST00000272322 POLA1P09884 1462 aaPredicted RBP24.01■■□□□ 1.43
VPS54-201ENST00000272322 TOPBP1Q92547 1522 aa23.95■■□□□ 1.42
VPS54-201ENST00000272322 LRRC9Q6ZRR7 1453 aa23.95■■□□□ 1.42
VPS54-201ENST00000272322 CLSPNQ9HAW4 1339 aa23.93■■□□□ 1.42
VPS54-201ENST00000272322 MTUS2Q5JR59 1369 aa23.92■■□□□ 1.42
VPS54-201ENST00000272322 SETD5Q9C0A6 1442 aa23.91■■□□□ 1.42
VPS54-201ENST00000272322 RRP7BPQ9NSQ0 103 aa23.91■■□□□ 1.42
VPS54-201ENST00000272322 FHAD1B1AJZ9 1412 aa23.89■■□□□ 1.41
VPS54-201ENST00000272322 TIAM1Q13009 1591 aa23.88■■□□□ 1.41
VPS54-201ENST00000272322 TRIM52Q96A61 297 aa23.83■■□□□ 1.41
VPS54-201ENST00000272322 PCF11O94913 1555 aaKnown RBP23.82■■□□□ 1.4
VPS54-201ENST00000272322 FBLN2P98095 1184 aa23.82■■□□□ 1.4
VPS54-201ENST00000272322 URB2Q14146 1524 aaKnown RBP23.81■■□□□ 1.4
VPS54-201ENST00000272322 PELP1Q8IZL8 1130 aaKnown RBP23.79■■□□□ 1.4
VPS54-201ENST00000272322 BCANQ96GW7 911 aa23.79■■□□□ 1.4
VPS54-201ENST00000272322 ABCA10Q8WWZ4 1543 aa23.77■■□□□ 1.4
VPS54-201ENST00000272322 DNMBPQ6XZF7 1577 aa23.77■■□□□ 1.4
VPS54-201ENST00000272322 FOXD1Q16676 465 aa23.76■■□□□ 1.39
VPS54-201ENST00000272322 CNGB1Q14028 1251 aaPredicted RBP23.75■■□□□ 1.39
VPS54-201ENST00000272322 AQRO60306 1485 aaKnown RBP eCLIP23.74■■□□□ 1.391e-7■■■■□ 25.8
VPS54-201ENST00000272322 GAPVD1Q14C86 1478 aa23.73■■□□□ 1.39
VPS54-201ENST00000272322 MAPKBP1O60336 1514 aa23.72■■□□□ 1.39
VPS54-201ENST00000272322 PDS5BQ9NTI5 1447 aa23.68■■□□□ 1.38
VPS54-201ENST00000272322 TONSLQ96HA7 1378 aa23.67■■□□□ 1.38
VPS54-201ENST00000272322 PRDM2Q13029 1718 aa23.66■■□□□ 1.38
VPS54-201ENST00000272322 WDR97A6NE52 1622 aa23.66■■□□□ 1.38
VPS54-201ENST00000272322 CASKIN1Q8WXD9 1431 aa23.66■■□□□ 1.38
VPS54-201ENST00000272322 PPP1R15AO75807 674 aaPredicted RBP23.66■■□□□ 1.38
VPS54-201ENST00000272322 FMN1Q68DA7 1419 aa23.65■■□□□ 1.38
VPS54-201ENST00000272322 PTPRKQ15262 1439 aa23.65■■□□□ 1.38
VPS54-201ENST00000272322 FGD6Q6ZV73 1430 aa23.63■■□□□ 1.37
VPS54-201ENST00000272322 ZNF777Q9ULD5 760 aaPredicted RBP23.61■■□□□ 1.37
VPS54-201ENST00000272322 SUPT16HQ9Y5B9 1047 aaKnown RBP23.58■■□□□ 1.37
VPS54-201ENST00000272322 FYCO1Q9BQS8 1478 aa23.58■■□□□ 1.36
VPS54-201ENST00000272322 ZNF644Q9H582 1327 aaPredicted RBP23.56■■□□□ 1.36
VPS54-201ENST00000272322 NCOA2Q15596 1464 aa23.54■■□□□ 1.36
VPS54-201ENST00000272322 ANP32CO43423 234 aa23.53■■□□□ 1.36
VPS54-201ENST00000272322 MAP3K1Q13233 1512 aa23.52■■□□□ 1.36
VPS54-201ENST00000272322 CCDC18Q5T9S5 1454 aa23.51■■□□□ 1.35
VPS54-201ENST00000272322 POLR3GLQ9BT43 218 aa23.51■■□□□ 1.35
VPS54-201ENST00000272322 ZNF326Q5BKZ1 582 aaKnown RBP23.49■■□□□ 1.35
VPS54-201ENST00000272322 SNAPC4Q5SXM2 1469 aa23.48■■□□□ 1.35
VPS54-201ENST00000272322 FKBP8Q14318 412 aa23.46■■□□□ 1.35
VPS54-201ENST00000272322 LAMC3Q9Y6N6 1575 aa23.46■■□□□ 1.35
VPS54-201ENST00000272322 EFCAB5A4FU69 1503 aa23.45■■□□□ 1.35
VPS54-201ENST00000272322 SENP3-EIF4A1A0A087X0R7 540 aa23.45■■□□□ 1.34
VPS54-201ENST00000272322 CHMP7Q8WUX9 453 aaPredicted RBP23.45■■□□□ 1.34
VPS54-201ENST00000272322 ZNF608Q9ULD9 1512 aaPredicted RBP23.45■■□□□ 1.34
VPS54-201ENST00000272322 MYOM3Q5VTT5 1437 aa23.44■■□□□ 1.34
VPS54-201ENST00000272322 CDK13Q14004 1512 aaKnown RBP23.43■■□□□ 1.34
VPS54-201ENST00000272322 KIF21AQ7Z4S6 1674 aa23.43■■□□□ 1.34
VPS54-201ENST00000272322 CUL7Q14999 1698 aa23.42■■□□□ 1.34
VPS54-201ENST00000272322 NAIPQ13075 1403 aa23.41■■□□□ 1.34
VPS54-201ENST00000272322 CFAP43Q8NDM7 1665 aa23.41■■□□□ 1.34
VPS54-201ENST00000272322 MPHOSPH9Q99550 1183 aa23.39■■□□□ 1.33
VPS54-201ENST00000272322 CTTNBP2Q8WZ74 1663 aa23.37■■□□□ 1.33
VPS54-201ENST00000272322 IRX6P78412 446 aaPredicted RBP23.37■■□□□ 1.33
VPS54-201ENST00000272322 L3MBTL2Q969R5 705 aa23.37■■□□□ 1.33
VPS54-201ENST00000272322 HSPA5P11021 654 aaKnown RBP23.36■■□□□ 1.33
VPS54-201ENST00000272322 MAGI3Q5TCQ9 1506 aa23.36■■□□□ 1.33
VPS54-201ENST00000272322 SLC4A1APQ9BWU0 796 aaKnown RBP23.35■■□□□ 1.33
VPS54-201ENST00000272322 GRIN2BQ13224 1484 aa23.35■■□□□ 1.33
VPS54-201ENST00000272322 HFM1A2PYH4 1435 aa23.34■■□□□ 1.33
VPS54-201ENST00000272322 UACAQ9BZF9 1416 aa23.33■■□□□ 1.33
VPS54-201ENST00000272322 ABCA5Q8WWZ7 1642 aa23.32■■□□□ 1.32
VPS54-201ENST00000272322 TIMELESSQ9UNS1 1208 aa23.31■■□□□ 1.32
VPS54-201ENST00000272322 HNRNPUQ00839 825 aaKnown RBP eCLIP23.31■■□□□ 1.32
VPS54-201ENST00000272322 CFDP1Q9UEE9 299 aaPredicted RBP23.29■■□□□ 1.32
VPS54-201ENST00000272322 EPRSP07814 1512 aaKnown RBP23.26■■□□□ 1.31
VPS54-201ENST00000272322 ERCC6Q03468 1493 aa23.26■■□□□ 1.31
VPS54-201ENST00000272322 FAM9BQ8IZU0 186 aa23.25■■□□□ 1.31
VPS54-201ENST00000272322 LRRIQ1Q96JM4 1722 aa23.25■■□□□ 1.31
VPS54-201ENST00000272322 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.24■■□□□ 1.31
VPS54-201ENST00000272322 NEFLP07196 543 aa23.24■■□□□ 1.31
VPS54-201ENST00000272322 C11orf95C9JLR9 678 aaPredicted RBP23.24■■□□□ 1.31
VPS54-201ENST00000272322 CDK11AQ9UQ88 783 aaPredicted RBP23.24■■□□□ 1.31
VPS54-201ENST00000272322 PTPN23Q9H3S7 1636 aa23.24■■□□□ 1.31
VPS54-201ENST00000272322 EIF4G2P78344 907 aaKnown RBP eCLIP23.24■■□□□ 1.31
VPS54-201ENST00000272322 CCDC184Q52MB2 194 aa23.23■■□□□ 1.31
VPS54-201ENST00000272322 WASHC2AQ641Q2 1341 aa23.22■■□□□ 1.31
VPS54-201ENST00000272322 SAMD9Q5K651 1589 aa23.22■■□□□ 1.31
VPS54-201ENST00000272322 TARBP1Q13395 1621 aaKnown RBP23.21■■□□□ 1.31
VPS54-201ENST00000272322 THOC2Q8NI27 1593 aaKnown RBP23.21■■□□□ 1.31
VPS54-201ENST00000272322 NBPF8Q3BBV2 869 aa23.21■■□□□ 1.31
VPS54-201ENST00000272322 MRC2Q9UBG0 1479 aa23.2■■□□□ 1.31
VPS54-201ENST00000272322 PRG4Q92954 1404 aaPredicted RBP23.2■■□□□ 1.3
VPS54-201ENST00000272322 IQGAP2Q13576 1575 aa23.19■■□□□ 1.3
VPS54-201ENST00000272322 JPH4Q96JJ6 628 aa23.18■■□□□ 1.3
VPS54-201ENST00000272322 SUPT6HQ7KZ85 1726 aaKnown RBP23.18■■□□□ 1.3
VPS54-201ENST00000272322 KDM2AQ9Y2K7 1162 aa23.18■■□□□ 1.3
VPS54-201ENST00000272322 EHBP1L1Q8N3D4 1523 aa23.18■■□□□ 1.3
VPS54-201ENST00000272322 KDM6BO15054 1643 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms