RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 CARMIL1Q5VZK9 1371 aa18.01■□□□□ 0.47
LIG1-201ENST00000263274 RRBP1Q9P2E9 1410 aaKnown RBP17.99■□□□□ 0.47
LIG1-201ENST00000263274 TRIM52Q96A61 297 aa17.98■□□□□ 0.47
LIG1-201ENST00000263274 IGF1RP08069 1367 aa17.98■□□□□ 0.47
LIG1-201ENST00000263274 FKBP8Q14318 412 aa17.97■□□□□ 0.47
LIG1-201ENST00000263274 BIVM-ERCC5R4GMW8 1640 aa17.94■□□□□ 0.46
LIG1-201ENST00000263274 SETD5Q9C0A6 1442 aa17.93■□□□□ 0.46
LIG1-201ENST00000263274 NEFLP07196 543 aa17.93■□□□□ 0.46
LIG1-201ENST00000263274 HMGXB3Q12766 1538 aa17.91■□□□□ 0.46
LIG1-201ENST00000263274 PHLDB1Q86UU1 1377 aa17.91■□□□□ 0.46
LIG1-201ENST00000263274 ANP32CO43423 234 aa17.9■□□□□ 0.46
LIG1-201ENST00000263274 CFTRP13569 1480 aa17.9■□□□□ 0.46
LIG1-201ENST00000263274 ARID3CA6NKF2 412 aa17.9■□□□□ 0.46
LIG1-201ENST00000263274 CADPSQ9ULU8 1353 aa17.89■□□□□ 0.45
LIG1-201ENST00000263274 FHOD3Q2V2M9 1422 aa17.86■□□□□ 0.45
LIG1-201ENST00000263274 TSHZ2Q9NRE2 1034 aa17.84■□□□□ 0.45
LIG1-201ENST00000263274 ERCC6Q03468 1493 aa17.84■□□□□ 0.45
LIG1-201ENST00000263274 CHIC2Q9UKJ5 165 aa17.84■□□□□ 0.45
LIG1-201ENST00000263274 FGD5Q6ZNL6 1462 aa17.83■□□□□ 0.45
LIG1-201ENST00000263274 TONSLQ96HA7 1378 aa17.83■□□□□ 0.44
LIG1-201ENST00000263274 CNGB1Q14028 1251 aaPredicted RBP17.81■□□□□ 0.44
LIG1-201ENST00000263274 LRRC9Q6ZRR7 1453 aa17.8■□□□□ 0.44
LIG1-201ENST00000263274 ANP32EQ9BTT0 268 aa17.8■□□□□ 0.44
LIG1-201ENST00000263274 PPP1R15AO75807 674 aaPredicted RBP17.79■□□□□ 0.44
LIG1-201ENST00000263274 FHAD1B1AJZ9 1412 aa17.79■□□□□ 0.44
LIG1-201ENST00000263274 MTUS2Q5JR59 1369 aa17.79■□□□□ 0.44
LIG1-201ENST00000263274 RRP7BPQ9NSQ0 103 aa17.77■□□□□ 0.44
LIG1-201ENST00000263274 WDR97A6NE52 1622 aa17.77■□□□□ 0.44
LIG1-201ENST00000263274 RAD54L2Q9Y4B4 1467 aa17.77■□□□□ 0.43
LIG1-201ENST00000263274 TIAM1Q13009 1591 aa17.76■□□□□ 0.43
LIG1-201ENST00000263274 ERICH6Q7L0X2 663 aa17.75■□□□□ 0.43
LIG1-201ENST00000263274 IRX6P78412 446 aaPredicted RBP17.75■□□□□ 0.43
LIG1-201ENST00000263274 MAPKBP1O60336 1514 aa17.75■□□□□ 0.43
LIG1-201ENST00000263274 HNRNPUQ00839 825 aaKnown RBP eCLIP17.71■□□□□ 0.43
LIG1-201ENST00000263274 FANCD2Q9BXW9 1451 aa17.7■□□□□ 0.42
LIG1-201ENST00000263274 TDRD9Q8NDG6 1382 aaKnown RBP17.69■□□□□ 0.42
LIG1-201ENST00000263274 PDS5BQ9NTI5 1447 aa17.68■□□□□ 0.42
LIG1-201ENST00000263274 POLR3GLQ9BT43 218 aa17.67■□□□□ 0.42
LIG1-201ENST00000263274 TIMELESSQ9UNS1 1208 aa17.64■□□□□ 0.41
LIG1-201ENST00000263274 PCF11O94913 1555 aaKnown RBP17.63■□□□□ 0.41
LIG1-201ENST00000263274 FOXD1Q16676 465 aa17.63■□□□□ 0.41
LIG1-201ENST00000263274 CCER2I3L3R5 266 aa17.6■□□□□ 0.41
LIG1-201ENST00000263274 FAM9BQ8IZU0 186 aa17.59■□□□□ 0.41
LIG1-201ENST00000263274 FBLN2P98095 1184 aa17.59■□□□□ 0.41
LIG1-201ENST00000263274 FGD6Q6ZV73 1430 aa17.58■□□□□ 0.4
LIG1-201ENST00000263274 CCDC18Q5T9S5 1454 aa17.57■□□□□ 0.4
LIG1-201ENST00000263274 SLC24A1O60721 1099 aa17.57■□□□□ 0.4
LIG1-201ENST00000263274 HSPA5P11021 654 aaKnown RBP17.56■□□□□ 0.4
LIG1-201ENST00000263274 SENP3-EIF4A1A0A087X0R7 540 aa17.56■□□□□ 0.4
LIG1-201ENST00000263274 FMN1Q68DA7 1419 aa17.55■□□□□ 0.4
LIG1-201ENST00000263274 MAP3K1Q13233 1512 aa17.55■□□□□ 0.4
LIG1-201ENST00000263274 ZNF326Q5BKZ1 582 aaKnown RBP17.55■□□□□ 0.4
LIG1-201ENST00000263274 RBM19Q9Y4C8 960 aaKnown RBP17.55■□□□□ 0.4
LIG1-201ENST00000263274 CASKIN1Q8WXD9 1431 aa17.55■□□□□ 0.4
LIG1-201ENST00000263274 POLA1P09884 1462 aaPredicted RBP17.54■□□□□ 0.4
LIG1-201ENST00000263274 EIF4G2P78344 907 aaKnown RBP eCLIP17.52■□□□□ 0.391e-11■■■■■ 55.3
LIG1-201ENST00000263274 PTPRKQ15262 1439 aa17.52■□□□□ 0.39
LIG1-201ENST00000263274 FYCO1Q9BQS8 1478 aa17.51■□□□□ 0.39
LIG1-201ENST00000263274 LAMC3Q9Y6N6 1575 aa17.5■□□□□ 0.39
LIG1-201ENST00000263274 TOPBP1Q92547 1522 aa17.5■□□□□ 0.39
LIG1-201ENST00000263274 MRS2Q9HD23 443 aa17.47■□□□□ 0.39
LIG1-201ENST00000263274 CDK11AQ9UQ88 783 aaPredicted RBP17.47■□□□□ 0.39
LIG1-201ENST00000263274 UACAQ9BZF9 1416 aa17.47■□□□□ 0.39
LIG1-201ENST00000263274 L3MBTL2Q969R5 705 aa17.46■□□□□ 0.39
LIG1-201ENST00000263274 ZNF777Q9ULD5 760 aaPredicted RBP17.46■□□□□ 0.39
LIG1-201ENST00000263274 NCOA2Q15596 1464 aa17.45■□□□□ 0.38
LIG1-201ENST00000263274 MPHOSPH9Q99550 1183 aa17.45■□□□□ 0.38
LIG1-201ENST00000263274 CCDC184Q52MB2 194 aa17.45■□□□□ 0.38
LIG1-201ENST00000263274 KIF21AQ7Z4S6 1674 aa17.44■□□□□ 0.38
LIG1-201ENST00000263274 WASHC2AQ641Q2 1341 aa17.44■□□□□ 0.38
LIG1-201ENST00000263274 ABCA10Q8WWZ4 1543 aa17.43■□□□□ 0.38
LIG1-201ENST00000263274 NAIPQ13075 1403 aa17.43■□□□□ 0.38
LIG1-201ENST00000263274 AQRO60306 1485 aaKnown RBP eCLIP17.42■□□□□ 0.382e-7■■■■■ 34
LIG1-201ENST00000263274 MYOM3Q5VTT5 1437 aa17.42■□□□□ 0.38
LIG1-201ENST00000263274 SLC4A1APQ9BWU0 796 aaKnown RBP17.42■□□□□ 0.38
LIG1-201ENST00000263274 URB2Q14146 1524 aaKnown RBP17.42■□□□□ 0.38
LIG1-201ENST00000263274 HFM1A2PYH4 1435 aa17.41■□□□□ 0.38
LIG1-201ENST00000263274 DNMBPQ6XZF7 1577 aa17.4■□□□□ 0.38
LIG1-201ENST00000263274 CFAP43Q8NDM7 1665 aa17.4■□□□□ 0.38
LIG1-201ENST00000263274 EFCAB5A4FU69 1503 aa17.39■□□□□ 0.38
LIG1-201ENST00000263274 GAPVD1Q14C86 1478 aa17.39■□□□□ 0.37
LIG1-201ENST00000263274 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.38■□□□□ 0.37
LIG1-201ENST00000263274 MRC2Q9UBG0 1479 aa17.37■□□□□ 0.37
LIG1-201ENST00000263274 B4GALNT3Q6L9W6 998 aa17.37■□□□□ 0.37
LIG1-201ENST00000263274 C11orf95C9JLR9 678 aaPredicted RBP17.36■□□□□ 0.37
LIG1-201ENST00000263274 ZNF644Q9H582 1327 aaPredicted RBP17.36■□□□□ 0.37
LIG1-201ENST00000263274 PRDM2Q13029 1718 aa17.35■□□□□ 0.37
LIG1-201ENST00000263274 PTPN23Q9H3S7 1636 aa17.33■□□□□ 0.36
LIG1-201ENST00000263274 SNAPC4Q5SXM2 1469 aa17.32■□□□□ 0.36
LIG1-201ENST00000263274 NBPF8Q3BBV2 869 aa17.31■□□□□ 0.36
LIG1-201ENST00000263274 PRKRIP1Q9H875 184 aaPredicted RBP17.31■□□□□ 0.36
LIG1-201ENST00000263274 KDM2AQ9Y2K7 1162 aa17.28■□□□□ 0.36
LIG1-201ENST00000263274 CUL7Q14999 1698 aa17.27■□□□□ 0.35
LIG1-201ENST00000263274 SALL2Q9Y467 1007 aaPredicted RBP17.26■□□□□ 0.35
LIG1-201ENST00000263274 ZNF608Q9ULD9 1512 aaPredicted RBP17.26■□□□□ 0.35
LIG1-201ENST00000263274 CHMP7Q8WUX9 453 aaPredicted RBP17.26■□□□□ 0.35
LIG1-201ENST00000263274 PPP4R2Q9NY27 417 aa17.26■□□□□ 0.35
LIG1-201ENST00000263274 CTTNBP2Q8WZ74 1663 aa17.25■□□□□ 0.35
LIG1-201ENST00000263274 CFDP1Q9UEE9 299 aaPredicted RBP17.25■□□□□ 0.35
LIG1-201ENST00000263274 CDK13Q14004 1512 aaKnown RBP17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms