RNA–Protein interactions for RNA: ENST00000234668.6

SYDE2-201, Transcript of synapse defective Rho GTPase homolog 2, humanhuman

TSL 1 (best)

Gene SYDE2, Length 3,000 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYDE2-201ENST00000234668 RAB3GAP2Q9H2M9 1393 aa13.32□□□□□ -0.28
SYDE2-201ENST00000234668 HIRIP3Q9BW71 556 aaPredicted RBP13.32□□□□□ -0.28
SYDE2-201ENST00000234668 FHOD3Q2V2M9 1422 aa13.32□□□□□ -0.28
SYDE2-201ENST00000234668 PHLDB1Q86UU1 1377 aa13.32□□□□□ -0.28
SYDE2-201ENST00000234668 TDRD9Q8NDG6 1382 aaKnown RBP13.3□□□□□ -0.28
SYDE2-201ENST00000234668 ARID3CA6NKF2 412 aa13.28□□□□□ -0.28
SYDE2-201ENST00000234668 KCNH8Q96L42 1107 aa13.28□□□□□ -0.28
SYDE2-201ENST00000234668 CLSPNQ9HAW4 1339 aa13.26□□□□□ -0.29
SYDE2-201ENST00000234668 POLA1P09884 1462 aaPredicted RBP13.24□□□□□ -0.29
SYDE2-201ENST00000234668 LRRC9Q6ZRR7 1453 aa13.24□□□□□ -0.29
SYDE2-201ENST00000234668 TIAM1Q13009 1591 aa13.22□□□□□ -0.29
SYDE2-201ENST00000234668 TOPBP1Q92547 1522 aa13.22□□□□□ -0.29
SYDE2-201ENST00000234668 DDX10Q13206 875 aaKnown RBP13.21□□□□□ -0.29
SYDE2-201ENST00000234668 SETD5Q9C0A6 1442 aa13.21□□□□□ -0.29
SYDE2-201ENST00000234668 PELP1Q8IZL8 1130 aaKnown RBP13.21□□□□□ -0.29
SYDE2-201ENST00000234668 FHAD1B1AJZ9 1412 aa13.18□□□□□ -0.3
SYDE2-201ENST00000234668 PCF11O94913 1555 aaKnown RBP13.17□□□□□ -0.3
SYDE2-201ENST00000234668 CHIC2Q9UKJ5 165 aa13.17□□□□□ -0.3
SYDE2-201ENST00000234668 PRDM2Q13029 1718 aa13.16□□□□□ -0.3
SYDE2-201ENST00000234668 MAPKBP1O60336 1514 aa13.15□□□□□ -0.3
SYDE2-201ENST00000234668 ABCA10Q8WWZ4 1543 aa13.15□□□□□ -0.3
SYDE2-201ENST00000234668 URB2Q14146 1524 aaKnown RBP13.14□□□□□ -0.31
SYDE2-201ENST00000234668 MTUS2Q5JR59 1369 aa13.14□□□□□ -0.31
SYDE2-201ENST00000234668 DNMBPQ6XZF7 1577 aa13.14□□□□□ -0.31
SYDE2-201ENST00000234668 RRP7BPQ9NSQ0 103 aa13.12□□□□□ -0.31
SYDE2-201ENST00000234668 WDR97A6NE52 1622 aa13.09□□□□□ -0.31
SYDE2-201ENST00000234668 CASKIN1Q8WXD9 1431 aa13.09□□□□□ -0.31
SYDE2-201ENST00000234668 PTPRKQ15262 1439 aa13.08□□□□□ -0.32
SYDE2-201ENST00000234668 GAPVD1Q14C86 1478 aa13.08□□□□□ -0.32
SYDE2-201ENST00000234668 MAP3K1Q13233 1512 aa13.07□□□□□ -0.32
SYDE2-201ENST00000234668 PPP1R15AO75807 674 aaPredicted RBP13.07□□□□□ -0.32
SYDE2-201ENST00000234668 TRIM52Q96A61 297 aa13.06□□□□□ -0.32
SYDE2-201ENST00000234668 AQRO60306 1485 aaKnown RBP eCLIP13.05□□□□□ -0.32
SYDE2-201ENST00000234668 BCANQ96GW7 911 aa13.05□□□□□ -0.32
SYDE2-201ENST00000234668 FGD6Q6ZV73 1430 aa13.04□□□□□ -0.32
SYDE2-201ENST00000234668 FYCO1Q9BQS8 1478 aa13.04□□□□□ -0.32
SYDE2-201ENST00000234668 FOXD1Q16676 465 aa13.04□□□□□ -0.32
SYDE2-201ENST00000234668 FMN1Q68DA7 1419 aa13.04□□□□□ -0.32
SYDE2-201ENST00000234668 SUPT16HQ9Y5B9 1047 aaKnown RBP13.04□□□□□ -0.32
SYDE2-201ENST00000234668 PDS5BQ9NTI5 1447 aa13.03□□□□□ -0.32
SYDE2-201ENST00000234668 TONSLQ96HA7 1378 aa13.01□□□□□ -0.33
SYDE2-201ENST00000234668 SNAPC4Q5SXM2 1469 aa13□□□□□ -0.33
SYDE2-201ENST00000234668 CFAP43Q8NDM7 1665 aa12.99□□□□□ -0.33
SYDE2-201ENST00000234668 NCOA2Q15596 1464 aa12.99□□□□□ -0.33
SYDE2-201ENST00000234668 EFCAB5A4FU69 1503 aa12.99□□□□□ -0.33
SYDE2-201ENST00000234668 CCDC18Q5T9S5 1454 aa12.97□□□□□ -0.33
SYDE2-201ENST00000234668 FBLN2P98095 1184 aa12.97□□□□□ -0.33
SYDE2-201ENST00000234668 LAMC3Q9Y6N6 1575 aa12.97□□□□□ -0.33
SYDE2-201ENST00000234668 CUL7Q14999 1698 aa12.96□□□□□ -0.33
SYDE2-201ENST00000234668 ZNF644Q9H582 1327 aaPredicted RBP12.95□□□□□ -0.34
SYDE2-201ENST00000234668 CTTNBP2Q8WZ74 1663 aa12.95□□□□□ -0.34
SYDE2-201ENST00000234668 NAIPQ13075 1403 aa12.94□□□□□ -0.34
SYDE2-201ENST00000234668 MYOM3Q5VTT5 1437 aa12.94□□□□□ -0.34
SYDE2-201ENST00000234668 ANP32CO43423 234 aa12.94□□□□□ -0.34
SYDE2-201ENST00000234668 KIF21AQ7Z4S6 1674 aa12.94□□□□□ -0.34
SYDE2-201ENST00000234668 CNGB1Q14028 1251 aaPredicted RBP12.94□□□□□ -0.34
SYDE2-201ENST00000234668 GRIN2BQ13224 1484 aa12.93□□□□□ -0.34
SYDE2-201ENST00000234668 MAGI3Q5TCQ9 1506 aa12.93□□□□□ -0.34
SYDE2-201ENST00000234668 FKBP8Q14318 412 aa12.92□□□□□ -0.34
SYDE2-201ENST00000234668 ABCA5Q8WWZ7 1642 aa12.92□□□□□ -0.34
SYDE2-201ENST00000234668 CDK13Q14004 1512 aaKnown RBP12.92□□□□□ -0.34
SYDE2-201ENST00000234668 LRRIQ1Q96JM4 1722 aa12.91□□□□□ -0.34
SYDE2-201ENST00000234668 HFM1A2PYH4 1435 aa12.91□□□□□ -0.34
SYDE2-201ENST00000234668 TIMELESSQ9UNS1 1208 aa12.91□□□□□ -0.34
SYDE2-201ENST00000234668 ZNF608Q9ULD9 1512 aaPredicted RBP12.91□□□□□ -0.34
SYDE2-201ENST00000234668 ZNF777Q9ULD5 760 aaPredicted RBP12.91□□□□□ -0.34
SYDE2-201ENST00000234668 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.91□□□□□ -0.34
SYDE2-201ENST00000234668 UACAQ9BZF9 1416 aa12.89□□□□□ -0.35
SYDE2-201ENST00000234668 MPHOSPH9Q99550 1183 aa12.89□□□□□ -0.35
SYDE2-201ENST00000234668 SAMD9Q5K651 1589 aa12.88□□□□□ -0.35
SYDE2-201ENST00000234668 HSPA5P11021 654 aaKnown RBP12.88□□□□□ -0.35
SYDE2-201ENST00000234668 L3MBTL2Q969R5 705 aa12.87□□□□□ -0.35
SYDE2-201ENST00000234668 PTPN23Q9H3S7 1636 aa12.87□□□□□ -0.35
SYDE2-201ENST00000234668 TARBP1Q13395 1621 aaKnown RBP12.86□□□□□ -0.35
SYDE2-201ENST00000234668 EPRSP07814 1512 aaKnown RBP12.84□□□□□ -0.35
SYDE2-201ENST00000234668 CHMP7Q8WUX9 453 aaPredicted RBP12.84□□□□□ -0.35
SYDE2-201ENST00000234668 C11orf95C9JLR9 678 aaPredicted RBP12.83□□□□□ -0.35
SYDE2-201ENST00000234668 ZNF326Q5BKZ1 582 aaKnown RBP12.83□□□□□ -0.36
SYDE2-201ENST00000234668 KDM6BO15054 1643 aa12.83□□□□□ -0.36
SYDE2-201ENST00000234668 IRX6P78412 446 aaPredicted RBP12.83□□□□□ -0.36
SYDE2-201ENST00000234668 POLR3GLQ9BT43 218 aa12.83□□□□□ -0.36
SYDE2-201ENST00000234668 WASHC2AQ641Q2 1341 aa12.82□□□□□ -0.36
SYDE2-201ENST00000234668 UGGT2Q9NYU1 1516 aa12.82□□□□□ -0.36
SYDE2-201ENST00000234668 SUPT6HQ7KZ85 1726 aaKnown RBP12.82□□□□□ -0.36
SYDE2-201ENST00000234668 SLC4A1APQ9BWU0 796 aaKnown RBP12.82□□□□□ -0.36
SYDE2-201ENST00000234668 SENP3-EIF4A1A0A087X0R7 540 aa12.82□□□□□ -0.36
SYDE2-201ENST00000234668 CCDC184Q52MB2 194 aa12.82□□□□□ -0.36
SYDE2-201ENST00000234668 TSHZ2Q9NRE2 1034 aa12.81□□□□□ -0.36
SYDE2-201ENST00000234668 EHBP1L1Q8N3D4 1523 aa12.81□□□□□ -0.36
SYDE2-201ENST00000234668 THOC2Q8NI27 1593 aaKnown RBP12.81□□□□□ -0.36
SYDE2-201ENST00000234668 HNRNPUQ00839 825 aaKnown RBP eCLIP12.81□□□□□ -0.36
SYDE2-201ENST00000234668 NBPF8Q3BBV2 869 aa12.8□□□□□ -0.36
SYDE2-201ENST00000234668 IQGAP2Q13576 1575 aa12.8□□□□□ -0.36
SYDE2-201ENST00000234668 DENND4BO75064 1496 aaPredicted RBP12.8□□□□□ -0.36
SYDE2-201ENST00000234668 MRC2Q9UBG0 1479 aa12.79□□□□□ -0.36
SYDE2-201ENST00000234668 CCER2I3L3R5 266 aa12.79□□□□□ -0.36
SYDE2-201ENST00000234668 EIF4G2P78344 907 aaKnown RBP eCLIP12.79□□□□□ -0.36
SYDE2-201ENST00000234668 CFDP1Q9UEE9 299 aaPredicted RBP12.78□□□□□ -0.36
SYDE2-201ENST00000234668 PRG4Q92954 1404 aaPredicted RBP12.77□□□□□ -0.36
SYDE2-201ENST00000234668 NEFLP07196 543 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms