RNA–Protein interactions for RNA: ENST00000221232.9

CNOT3-201, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT3, Length 2,852 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-201ENST00000221232 RAB3GAP2Q9H2M9 1393 aa21.3■■□□□ 1
CNOT3-201ENST00000221232 FHOD3Q2V2M9 1422 aa21.29■■□□□ 1
CNOT3-201ENST00000221232 PHLDB1Q86UU1 1377 aa21.29■■□□□ 1
CNOT3-201ENST00000221232 SIN3AQ96ST3 1273 aa21.26■□□□□ 0.99
CNOT3-201ENST00000221232 TDRD9Q8NDG6 1382 aaKnown RBP21.24■□□□□ 0.99
CNOT3-201ENST00000221232 PRDM2Q13029 1718 aa21.22■□□□□ 0.99
CNOT3-201ENST00000221232 POLA1P09884 1462 aaPredicted RBP21.22■□□□□ 0.99
CNOT3-201ENST00000221232 LRRC9Q6ZRR7 1453 aa21.22■□□□□ 0.99
CNOT3-201ENST00000221232 TIAM1Q13009 1591 aa21.21■□□□□ 0.99
CNOT3-201ENST00000221232 TOPBP1Q92547 1522 aa21.2■□□□□ 0.98
CNOT3-201ENST00000221232 FHAD1B1AJZ9 1412 aa21.17■□□□□ 0.98
CNOT3-201ENST00000221232 SETD5Q9C0A6 1442 aa21.15■□□□□ 0.98
CNOT3-201ENST00000221232 HIRIP3Q9BW71 556 aaPredicted RBP21.15■□□□□ 0.98
CNOT3-201ENST00000221232 DNMBPQ6XZF7 1577 aa21.12■□□□□ 0.97
CNOT3-201ENST00000221232 ABCA10Q8WWZ4 1543 aa21.12■□□□□ 0.97
CNOT3-201ENST00000221232 PCF11O94913 1555 aaKnown RBP21.11■□□□□ 0.97
CNOT3-201ENST00000221232 ARID3CA6NKF2 412 aa21.09■□□□□ 0.97
CNOT3-201ENST00000221232 KCNH8Q96L42 1107 aa21.08■□□□□ 0.97
CNOT3-201ENST00000221232 URB2Q14146 1524 aaKnown RBP21.06■□□□□ 0.96
CNOT3-201ENST00000221232 MAPKBP1O60336 1514 aa21.05■□□□□ 0.96
CNOT3-201ENST00000221232 MAP3K1Q13233 1512 aa21.05■□□□□ 0.96
CNOT3-201ENST00000221232 DDX10Q13206 875 aaKnown RBP21.04■□□□□ 0.96
CNOT3-201ENST00000221232 MTUS2Q5JR59 1369 aa21.03■□□□□ 0.96
CNOT3-201ENST00000221232 CASKIN1Q8WXD9 1431 aa21■□□□□ 0.95
CNOT3-201ENST00000221232 GAPVD1Q14C86 1478 aa20.97■□□□□ 0.95
CNOT3-201ENST00000221232 CHIC2Q9UKJ5 165 aa20.96■□□□□ 0.95
CNOT3-201ENST00000221232 FYCO1Q9BQS8 1478 aa20.95■□□□□ 0.94
CNOT3-201ENST00000221232 FMN1Q68DA7 1419 aa20.94■□□□□ 0.94
CNOT3-201ENST00000221232 PDS5BQ9NTI5 1447 aa20.93■□□□□ 0.94
CNOT3-201ENST00000221232 WDR97A6NE52 1622 aa20.92■□□□□ 0.94
CNOT3-201ENST00000221232 RRP7BPQ9NSQ0 103 aa20.91■□□□□ 0.94
CNOT3-201ENST00000221232 FGD6Q6ZV73 1430 aa20.9■□□□□ 0.94
CNOT3-201ENST00000221232 EFCAB5A4FU69 1503 aa20.9■□□□□ 0.94
CNOT3-201ENST00000221232 CFAP43Q8NDM7 1665 aa20.9■□□□□ 0.94
CNOT3-201ENST00000221232 PPP1R15AO75807 674 aaPredicted RBP20.89■□□□□ 0.93
CNOT3-201ENST00000221232 PTPRKQ15262 1439 aa20.89■□□□□ 0.93
CNOT3-201ENST00000221232 CUL7Q14999 1698 aa20.88■□□□□ 0.93
CNOT3-201ENST00000221232 LAMC3Q9Y6N6 1575 aa20.88■□□□□ 0.93
CNOT3-201ENST00000221232 AQRO60306 1485 aaKnown RBP eCLIP20.86■□□□□ 0.937e-9■■■■■ 27
CNOT3-201ENST00000221232 SNAPC4Q5SXM2 1469 aa20.85■□□□□ 0.93
CNOT3-201ENST00000221232 CTTNBP2Q8WZ74 1663 aa20.83■□□□□ 0.93
CNOT3-201ENST00000221232 TRIM52Q96A61 297 aa20.83■□□□□ 0.93
CNOT3-201ENST00000221232 TONSLQ96HA7 1378 aa20.82■□□□□ 0.92
CNOT3-201ENST00000221232 NCOA2Q15596 1464 aa20.81■□□□□ 0.92
CNOT3-201ENST00000221232 SUPT16HQ9Y5B9 1047 aaKnown RBP20.8■□□□□ 0.92
CNOT3-201ENST00000221232 CCDC18Q5T9S5 1454 aa20.78■□□□□ 0.92
CNOT3-201ENST00000221232 ABCA5Q8WWZ7 1642 aa20.77■□□□□ 0.92
CNOT3-201ENST00000221232 KIF21AQ7Z4S6 1674 aa20.76■□□□□ 0.91
CNOT3-201ENST00000221232 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.75■□□□□ 0.917e-11■■□□□ 13.1
CNOT3-201ENST00000221232 MYOM3Q5VTT5 1437 aa20.75■□□□□ 0.91
CNOT3-201ENST00000221232 GRIN2BQ13224 1484 aa20.74■□□□□ 0.91
CNOT3-201ENST00000221232 TIMELESSQ9UNS1 1208 aa20.74■□□□□ 0.91
CNOT3-201ENST00000221232 FOXD1Q16676 465 aa20.74■□□□□ 0.91
CNOT3-201ENST00000221232 BCANQ96GW7 911 aa20.72■□□□□ 0.91
CNOT3-201ENST00000221232 NAIPQ13075 1403 aa20.71■□□□□ 0.91
CNOT3-201ENST00000221232 HFM1A2PYH4 1435 aa20.7■□□□□ 0.91
CNOT3-201ENST00000221232 SAMD9Q5K651 1589 aa20.7■□□□□ 0.9
CNOT3-201ENST00000221232 ANP32CO43423 234 aa20.69■□□□□ 0.9
CNOT3-201ENST00000221232 LRRIQ1Q96JM4 1722 aa20.69■□□□□ 0.9
CNOT3-201ENST00000221232 MAGI3Q5TCQ9 1506 aa20.69■□□□□ 0.9
CNOT3-201ENST00000221232 UACAQ9BZF9 1416 aa20.68■□□□□ 0.9
CNOT3-201ENST00000221232 FBLN2P98095 1184 aa20.67■□□□□ 0.9
CNOT3-201ENST00000221232 CDK13Q14004 1512 aaKnown RBP20.65■□□□□ 0.9
CNOT3-201ENST00000221232 TARBP1Q13395 1621 aaKnown RBP20.65■□□□□ 0.9
CNOT3-201ENST00000221232 PTPN23Q9H3S7 1636 aa20.64■□□□□ 0.89
CNOT3-201ENST00000221232 ZNF608Q9ULD9 1512 aaPredicted RBP20.64■□□□□ 0.89
CNOT3-201ENST00000221232 ZNF644Q9H582 1327 aaPredicted RBP20.64■□□□□ 0.89
CNOT3-201ENST00000221232 SUPT6HQ7KZ85 1726 aaKnown RBP20.6■□□□□ 0.89
CNOT3-201ENST00000221232 EHBP1L1Q8N3D4 1523 aa20.6■□□□□ 0.89
CNOT3-201ENST00000221232 MYT1Q01538 1121 aa20.6■□□□□ 0.89
CNOT3-201ENST00000221232 MPHOSPH9Q99550 1183 aa20.6■□□□□ 0.89
CNOT3-201ENST00000221232 FKBP8Q14318 412 aa20.59■□□□□ 0.89
CNOT3-201ENST00000221232 EPRSP07814 1512 aaKnown RBP20.59■□□□□ 0.89
CNOT3-201ENST00000221232 UGGT2Q9NYU1 1516 aa20.58■□□□□ 0.88
CNOT3-201ENST00000221232 ZNF777Q9ULD5 760 aaPredicted RBP20.56■□□□□ 0.88
CNOT3-201ENST00000221232 IQGAP2Q13576 1575 aa20.56■□□□□ 0.88
CNOT3-201ENST00000221232 MRC2Q9UBG0 1479 aa20.55■□□□□ 0.88
CNOT3-201ENST00000221232 HSPA5P11021 654 aaKnown RBP20.55■□□□□ 0.88
CNOT3-201ENST00000221232 L3MBTL2Q969R5 705 aa20.53■□□□□ 0.88
CNOT3-201ENST00000221232 CHMP7Q8WUX9 453 aaPredicted RBP20.52■□□□□ 0.88
CNOT3-201ENST00000221232 THOC2Q8NI27 1593 aaKnown RBP20.51■□□□□ 0.87
CNOT3-201ENST00000221232 PBRM1Q86U86 1689 aa20.51■□□□□ 0.87
CNOT3-201ENST00000221232 KDM6BO15054 1643 aa20.5■□□□□ 0.87
CNOT3-201ENST00000221232 CCER2I3L3R5 266 aa20.49■□□□□ 0.87
CNOT3-201ENST00000221232 CNGB1Q14028 1251 aaPredicted RBP20.49■□□□□ 0.87
CNOT3-201ENST00000221232 ADAMTS12P58397 1594 aa20.48■□□□□ 0.87
CNOT3-201ENST00000221232 HECW1Q76N89 1606 aa20.48■□□□□ 0.87
CNOT3-201ENST00000221232 ARHGEF11O15085 1522 aa20.48■□□□□ 0.87
CNOT3-201ENST00000221232 SLC4A1APQ9BWU0 796 aaKnown RBP20.48■□□□□ 0.87
CNOT3-201ENST00000221232 WASHC2AQ641Q2 1341 aa20.47■□□□□ 0.87
CNOT3-201ENST00000221232 DENND4BO75064 1496 aaPredicted RBP20.46■□□□□ 0.87
CNOT3-201ENST00000221232 EIF4G2P78344 907 aaKnown RBP eCLIP20.45■□□□□ 0.86
CNOT3-201ENST00000221232 CDK11AQ9UQ88 783 aaPredicted RBP20.45■□□□□ 0.86
CNOT3-201ENST00000221232 TCOF1Q13428 1488 aaKnown RBP20.44■□□□□ 0.86
CNOT3-201ENST00000221232 CFDP1Q9UEE9 299 aaPredicted RBP20.44■□□□□ 0.86
CNOT3-201ENST00000221232 C11orf95C9JLR9 678 aaPredicted RBP20.43■□□□□ 0.86
CNOT3-201ENST00000221232 HNRNPUQ00839 825 aaKnown RBP eCLIP20.43■□□□□ 0.86
CNOT3-201ENST00000221232 WDR62O43379 1518 aa20.43■□□□□ 0.86
CNOT3-201ENST00000221232 ZNF326Q5BKZ1 582 aaKnown RBP20.42■□□□□ 0.86
CNOT3-201ENST00000221232 TSHZ2Q9NRE2 1034 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms