RNA–Protein interactions for RNA: ENST00000221166.9

NEFM-201, Transcript of neurofilament medium, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEFM, Length 4,020 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEFM-201ENST00000221166 SETD5Q9C0A6 1442 aa15.82■□□□□ 0.12
NEFM-201ENST00000221166 IGF1RP08069 1367 aa15.81■□□□□ 0.12
NEFM-201ENST00000221166 NCAPD3P42695 1498 aa15.77■□□□□ 0.12
NEFM-201ENST00000221166 TSHZ2Q9NRE2 1034 aa15.75■□□□□ 0.11
NEFM-201ENST00000221166 PHLDB1Q86UU1 1377 aa15.75■□□□□ 0.11
NEFM-201ENST00000221166 TONSLQ96HA7 1378 aa15.75■□□□□ 0.11
NEFM-201ENST00000221166 ARID3CA6NKF2 412 aa15.75■□□□□ 0.11
NEFM-201ENST00000221166 BIVM-ERCC5R4GMW8 1640 aa15.72■□□□□ 0.11
NEFM-201ENST00000221166 CFTRP13569 1480 aa15.72■□□□□ 0.11
NEFM-201ENST00000221166 CHIC2Q9UKJ5 165 aa15.72■□□□□ 0.11
NEFM-201ENST00000221166 CNGB1Q14028 1251 aaPredicted RBP15.71■□□□□ 0.11
NEFM-201ENST00000221166 FHOD3Q2V2M9 1422 aa15.7■□□□□ 0.1
NEFM-201ENST00000221166 CADPSQ9ULU8 1353 aa15.69■□□□□ 0.1
NEFM-201ENST00000221166 PPP1R15AO75807 674 aaPredicted RBP15.69■□□□□ 0.1
NEFM-201ENST00000221166 FHAD1B1AJZ9 1412 aa15.69■□□□□ 0.1
NEFM-201ENST00000221166 MTUS2Q5JR59 1369 aa15.69■□□□□ 0.1
NEFM-201ENST00000221166 LRRC9Q6ZRR7 1453 aa15.66■□□□□ 0.1
NEFM-201ENST00000221166 RRP7BPQ9NSQ0 103 aa15.66■□□□□ 0.1
NEFM-201ENST00000221166 FGD5Q6ZNL6 1462 aa15.66■□□□□ 0.1
NEFM-201ENST00000221166 IRX6P78412 446 aaPredicted RBP15.65■□□□□ 0.1
NEFM-201ENST00000221166 HNRNPUQ00839 825 aaKnown RBP eCLIP15.65■□□□□ 0.1
NEFM-201ENST00000221166 HMGXB3Q12766 1538 aa15.63■□□□□ 0.09
NEFM-201ENST00000221166 WDR97A6NE52 1622 aa15.61■□□□□ 0.09
NEFM-201ENST00000221166 POLR3GLQ9BT43 218 aa15.61■□□□□ 0.09
NEFM-201ENST00000221166 TIAM1Q13009 1591 aa15.61■□□□□ 0.09
NEFM-201ENST00000221166 TIMELESSQ9UNS1 1208 aa15.6■□□□□ 0.09
NEFM-201ENST00000221166 RAD54L2Q9Y4B4 1467 aa15.6■□□□□ 0.09
NEFM-201ENST00000221166 MAPKBP1O60336 1514 aa15.59■□□□□ 0.09
NEFM-201ENST00000221166 ANP32EQ9BTT0 268 aa15.56■□□□□ 0.08
NEFM-201ENST00000221166 CCER2I3L3R5 266 aa15.56■□□□□ 0.08
NEFM-201ENST00000221166 TDRD9Q8NDG6 1382 aaKnown RBP15.55■□□□□ 0.08
NEFM-201ENST00000221166 ERICH6Q7L0X2 663 aa15.54■□□□□ 0.08
NEFM-201ENST00000221166 FANCD2Q9BXW9 1451 aa15.53■□□□□ 0.08
NEFM-201ENST00000221166 FAM9BQ8IZU0 186 aa15.53■□□□□ 0.08
NEFM-201ENST00000221166 FOXD1Q16676 465 aa15.51■□□□□ 0.07
NEFM-201ENST00000221166 RBM19Q9Y4C8 960 aaKnown RBP15.51■□□□□ 0.07
NEFM-201ENST00000221166 HSPA5P11021 654 aaKnown RBP15.49■□□□□ 0.07
NEFM-201ENST00000221166 ZNF326Q5BKZ1 582 aaKnown RBP15.49■□□□□ 0.07
NEFM-201ENST00000221166 CDK11AQ9UQ88 783 aaPredicted RBP15.48■□□□□ 0.07
NEFM-201ENST00000221166 PCF11O94913 1555 aaKnown RBP15.48■□□□□ 0.07
NEFM-201ENST00000221166 EIF4G2P78344 907 aaKnown RBP eCLIP15.47■□□□□ 0.07
NEFM-201ENST00000221166 FGD6Q6ZV73 1430 aa15.47■□□□□ 0.07
NEFM-201ENST00000221166 FMN1Q68DA7 1419 aa15.47■□□□□ 0.07
NEFM-201ENST00000221166 CCDC18Q5T9S5 1454 aa15.47■□□□□ 0.07
NEFM-201ENST00000221166 MAP3K1Q13233 1512 aa15.45■□□□□ 0.06
NEFM-201ENST00000221166 CASKIN1Q8WXD9 1431 aa15.45■□□□□ 0.06
NEFM-201ENST00000221166 SENP3-EIF4A1A0A087X0R7 540 aa15.45■□□□□ 0.06
NEFM-201ENST00000221166 MRS2Q9HD23 443 aa15.43■□□□□ 0.06
NEFM-201ENST00000221166 NESP48681 1621 aa15.43■□□□□ 0.06
NEFM-201ENST00000221166 FYCO1Q9BQS8 1478 aa15.41■□□□□ 0.06
NEFM-201ENST00000221166 ZNF777Q9ULD5 760 aaPredicted RBP15.4■□□□□ 0.06
NEFM-201ENST00000221166 POLA1P09884 1462 aaPredicted RBP15.39■□□□□ 0.05
NEFM-201ENST00000221166 L3MBTL2Q969R5 705 aa15.39■□□□□ 0.05
NEFM-201ENST00000221166 UACAQ9BZF9 1416 aa15.39■□□□□ 0.05
NEFM-201ENST00000221166 MPHOSPH9Q99550 1183 aa15.38■□□□□ 0.05
NEFM-201ENST00000221166 PTPRKQ15262 1439 aa15.38■□□□□ 0.05
NEFM-201ENST00000221166 SLC4A1APQ9BWU0 796 aaKnown RBP15.37■□□□□ 0.05
NEFM-201ENST00000221166 TOPBP1Q92547 1522 aa15.36■□□□□ 0.05
NEFM-201ENST00000221166 WASHC2AQ641Q2 1341 aa15.36■□□□□ 0.05
NEFM-201ENST00000221166 NCOA2Q15596 1464 aa15.36■□□□□ 0.05
NEFM-201ENST00000221166 MYOM3Q5VTT5 1437 aa15.34■□□□□ 0.05
NEFM-201ENST00000221166 CCDC184Q52MB2 194 aa15.34■□□□□ 0.05
NEFM-201ENST00000221166 HFM1A2PYH4 1435 aa15.33■□□□□ 0.05
NEFM-201ENST00000221166 NAIPQ13075 1403 aa15.33■□□□□ 0.04
NEFM-201ENST00000221166 B4GALNT3Q6L9W6 998 aa15.33■□□□□ 0.04
NEFM-201ENST00000221166 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.32■□□□□ 0.04
NEFM-201ENST00000221166 ABCA10Q8WWZ4 1543 aa15.32■□□□□ 0.04
NEFM-201ENST00000221166 CC2D2AQ9P2K1 1620 aa15.31■□□□□ 0.04
NEFM-201ENST00000221166 FBLN2P98095 1184 aa15.31■□□□□ 0.04
NEFM-201ENST00000221166 EFCAB5A4FU69 1503 aa15.31■□□□□ 0.04
NEFM-201ENST00000221166 AQRO60306 1485 aaKnown RBP eCLIP15.3■□□□□ 0.04
NEFM-201ENST00000221166 DNAJC5BQ9UF47 199 aa15.29■□□□□ 0.04
NEFM-201ENST00000221166 GAPVD1Q14C86 1478 aa15.29■□□□□ 0.04
NEFM-201ENST00000221166 DNMBPQ6XZF7 1577 aa15.28■□□□□ 0.04
NEFM-201ENST00000221166 PPP4R2Q9NY27 417 aa15.27■□□□□ 0.04
NEFM-201ENST00000221166 C11orf95C9JLR9 678 aaPredicted RBP15.27■□□□□ 0.03
NEFM-201ENST00000221166 PRKRIP1Q9H875 184 aaPredicted RBP15.26■□□□□ 0.03
NEFM-201ENST00000221166 CFAP43Q8NDM7 1665 aa15.26■□□□□ 0.03
NEFM-201ENST00000221166 ZNF644Q9H582 1327 aaPredicted RBP15.26■□□□□ 0.03
NEFM-201ENST00000221166 KDM2AQ9Y2K7 1162 aa15.24■□□□□ 0.03
NEFM-201ENST00000221166 NBPF8Q3BBV2 869 aa15.23■□□□□ 0.03
NEFM-201ENST00000221166 SALL2Q9Y467 1007 aaPredicted RBP15.23■□□□□ 0.03
NEFM-201ENST00000221166 PTPN23Q9H3S7 1636 aa15.23■□□□□ 0.03
NEFM-201ENST00000221166 CFDP1Q9UEE9 299 aaPredicted RBP15.21■□□□□ 0.03
NEFM-201ENST00000221166 SNAPC4Q5SXM2 1469 aa15.21■□□□□ 0.02
NEFM-201ENST00000221166 PDS5BQ9NTI5 1447 aa15.2■□□□□ 0.02
NEFM-201ENST00000221166 CCDC7Q96M83 1385 aa15.19■□□□□ 0.02
NEFM-201ENST00000221166 MSH5O43196 834 aa15.19■□□□□ 0.02
NEFM-201ENST00000221166 TMC1Q8TDI8 760 aa15.19■□□□□ 0.02
NEFM-201ENST00000221166 URB2Q14146 1524 aaKnown RBP15.18■□□□□ 0.02
NEFM-201ENST00000221166 CCDC136Q96JN2 1154 aa15.17■□□□□ 0.02
NEFM-201ENST00000221166 BCL11AQ9H165 835 aa15.17■□□□□ 0.02
NEFM-201ENST00000221166 KIF7Q2M1P5 1343 aa15.17■□□□□ 0.02
NEFM-201ENST00000221166 CNTLNQ9NXG0 1405 aa15.17■□□□□ 0.02
NEFM-201ENST00000221166 CUL7Q14999 1698 aa15.16■□□□□ 0.02
NEFM-201ENST00000221166 PRDM2Q13029 1718 aa15.16■□□□□ 0.02
NEFM-201ENST00000221166 PKD2Q13563 968 aa15.15■□□□□ 0.02
NEFM-201ENST00000221166 EHBP1L1Q8N3D4 1523 aa15.15■□□□□ 0.02
NEFM-201ENST00000221166 GRIN2BQ13224 1484 aa15.15■□□□□ 0.02
NEFM-201ENST00000221166 SUPT6HQ7KZ85 1726 aaKnown RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms